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. 1977 Apr;22(1):130–141. doi: 10.1128/jvi.22.1.130-141.1977

Folded, concatenated genomes as replication intermediates of bacteriophage T7 DNA.

V Paetkau, L Langman, R Bradley, D Scraba, R C Miller Jr
PMCID: PMC515693  PMID: 853564

Abstract

A complex form of bacteriophage T7 DNA, containing up to several hundred phage equivalents of DNA, arises during replication of T7. The complex was stable to treatment with ionic detergent, Pronase, and phenol. The complex form normally exists for only a short time, corresponding to the phase of rapid T7 DNA synthesis. It is then converted to shorter molecules, both concatemers and unit-size DNA. The complex was stable up to the temperature of denaturation of the bihelix. It consisted of a series of loops amanating from a dense central core, as shownby electron microscopy. The complex form is similar to the relaxed Escherichia coli folded chromosome ('nucleoid'). The loops contained an average of 0.7 to 0.8 phage equivalent of DNA. During infection by phage with an amber mutation in gene 3 (endonuclease), formation of the complex occurred normally, but its maturation to unit-size DNA blocked. Before treatment with phenol, the complex contained short fragments of newly replicated DNA. These were released as single-stranded pieces during phenol treatment. A pathway for T7 DNA replication is indicated in which the flow of material is from unit-size DNA to linear concatemers to the complex form, and then back to unit-size DNA by way of linear concatemers.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Ben-Porat T., Kaplan A. S., Stehn B., Rubenstein A. S. Concatemeric forms of intracellular herpesvirus DNA. Virology. 1976 Feb;69(2):547–560. doi: 10.1016/0042-6822(76)90484-0. [DOI] [PubMed] [Google Scholar]
  2. Bernstein C., Bernstein H. Coiled rings of DNA released from cells infected with bacteriophages T7 or T4 or from uninfected Escherichia coli. J Virol. 1974 Jun;13(6):1346–1355. doi: 10.1128/jvi.13.6.1346-1355.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Center M. S. Replicative intermediates of bacteriophage T7 deoxyribonucleic acid. J Virol. 1972 Jul;10(1):115–123. doi: 10.1128/jvi.10.1.115-123.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Center M. S. Role of gene 2 in bacteriophage T7 DNA synthesis. J Virol. 1975 Jul;16(1):94–100. doi: 10.1128/jvi.16.1.94-100.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Curtis M. J., Alberts B. Studies on the structure of intracellular bacteriophage T4 DNA. J Mol Biol. 1976 Apr 25;102(4):793–816. doi: 10.1016/0022-2836(76)90292-8. [DOI] [PubMed] [Google Scholar]
  6. Delius H., Worcel A. Letter: Electron microscopic visualization of the folded chromosome of Escherichia coli. J Mol Biol. 1974 Jan 5;82(1):107–109. doi: 10.1016/0022-2836(74)90577-4. [DOI] [PubMed] [Google Scholar]
  7. Dressler D., Wolfson J., Magazin M. Initiation and reinitiation of DNA synthesis during replication of bacteriophage T7. Proc Natl Acad Sci U S A. 1972 Apr;69(4):998–1002. doi: 10.1073/pnas.69.4.998. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Drlica K., Worcel A. Conformational transitions in the Escherichia coli chromosome: analysis by viscometry and sedimentation. J Mol Biol. 1975 Oct 25;98(2):393–411. doi: 10.1016/s0022-2836(75)80126-4. [DOI] [PubMed] [Google Scholar]
  9. Dubin S. B., Benedek G. B., Bancroft F. C., Freifelder D. Molecular weights of coliphages and colip- hage DNA. II. Measurement of diffusion coefficients using optical mixing spectroscopy, and measurement of sedimentation coefficients. J Mol Biol. 1970 Dec 28;54(3):547–556. doi: 10.1016/0022-2836(70)90125-7. [DOI] [PubMed] [Google Scholar]
  10. Frankel F. R., Batcheler M. L., Clark C. K. The role of gene 49 in DNA replication and head morphogenesis in bacteriophage T4. J Mol Biol. 1971 Dec 28;62(3):439–463. doi: 10.1016/0022-2836(71)90147-1. [DOI] [PubMed] [Google Scholar]
  11. Frankel F. R. DNA replication after T4 infection. Cold Spring Harb Symp Quant Biol. 1968;33:485–493. doi: 10.1101/sqb.1968.033.01.056. [DOI] [PubMed] [Google Scholar]
  12. Frankel F. R. Evidence for long DNA strands in the replicating pool after T4 infection. Proc Natl Acad Sci U S A. 1968 Jan;59(1):131–138. doi: 10.1073/pnas.59.1.131. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Frankel F. R. Studies on the nature of replicating DNA in T4-infected Escherichia coli. J Mol Biol. 1966 Jun;18(1):127–143. doi: 10.1016/s0022-2836(66)80081-5. [DOI] [PubMed] [Google Scholar]
  14. Fröhlich B., Powling A., Knippers R. Formation of concatemeric DNA in bacteriophage T7-infected bacteria. Virology. 1975 Jun;65(2):455–468. doi: 10.1016/0042-6822(75)90051-3. [DOI] [PubMed] [Google Scholar]
  15. HEARST J. E. The specific volume of various cationic forms of deoxyribonucleic acid. J Mol Biol. 1962 May;4:415–417. doi: 10.1016/s0022-2836(62)80024-2. [DOI] [PubMed] [Google Scholar]
  16. Hamilton D. L., Luftig R. B. Bacteriophage T4 head morphogenesis. VII. Terminal stages of head maturation. J Virol. 1976 Feb;17(2):550–567. doi: 10.1128/jvi.17.2.550-567.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Hausmann R., LaRue K. Variations in sedimentation patterns among deoxyribonucleic acids synthesized after infection of Escherichia coli by different amber mutants of bacteriophage T7. J Virol. 1969 Feb;3(2):278–281. doi: 10.1128/jvi.3.2.278-281.1969. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Huberman J. A. Visualization of replicating mammalian and T4 bacteriophage DNA. Cold Spring Harb Symp Quant Biol. 1968;33:509–524. doi: 10.1101/sqb.1968.033.01.059. [DOI] [PubMed] [Google Scholar]
  19. Kelly T. J., Jr, Thomas C. A., Jr An intermediate in the replication of bacteriophage T7 DNA molecules. J Mol Biol. 1969 Sep 28;44(3):459–475. doi: 10.1016/0022-2836(69)90373-8. [DOI] [PubMed] [Google Scholar]
  20. Kemper B., Brown D. T. Function of gene 49 of bacteriophage T4. II. Analysis of intracellular development and the structure of very fast-sedimenting DNA. J Virol. 1976 Jun;18(3):1000–1015. doi: 10.1128/jvi.18.3.1000-1015.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Kemper B., Janz E. Function of gene 49 of bacteriophage T4. I. Isolation and biochemical characterization of very fast-sedimenting DNA. J Virol. 1976 Jun;18(3):992–999. doi: 10.1128/jvi.18.3.992-999.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Kerr C., Sadowski P. D. The involvement of genes 3,4,5 and 6 in genetic recombination in bacteriophage T7. Virology. 1975 May;65(1):281–285. doi: 10.1016/0042-6822(75)90031-8. [DOI] [PubMed] [Google Scholar]
  23. Kozinski A. W., Lin T. H. Early intracellular events in the replication of T4 phage DNA. I. Complex formation of replicative DNA. Proc Natl Acad Sci U S A. 1965 Jul;54(1):273–278. doi: 10.1073/pnas.54.1.273. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Lee M., Miller R. C., Jr, Scraba D., Paetkau V. The essential role of bacteriophage T7 endonuclease (gene 3) in molecular recombination. J Mol Biol. 1976 Jul 15;104(4):883–888. doi: 10.1016/0022-2836(76)90189-3. [DOI] [PubMed] [Google Scholar]
  25. Miller R. C., Jr, Lee M. The role of bacteriophage T7 exonuclease (gene 6) in genetic recombination and production of concatemers. J Mol Biol. 1976 Feb 25;101(2):223–234. doi: 10.1016/0022-2836(76)90374-0. [DOI] [PubMed] [Google Scholar]
  26. Paetkau V., Langman L. A quantitative, batch hydroxyapatite method for analyzing native and denatured DNA at room temperature. Anal Biochem. 1975 May 12;65(1-2):525–532. doi: 10.1016/0003-2697(75)90537-0. [DOI] [PubMed] [Google Scholar]
  27. Paetkau V., Langman L., Miller R. C., Jr The origin of nascent single-stranded fragments in replicating TM DNA. J Mol Biol. 1975 Nov 15;98(4):719–737. doi: 10.1016/s0022-2836(75)80006-4. [DOI] [PubMed] [Google Scholar]
  28. Powling A., Knippers R. Some functions involved in bacteriophage T7 genetic recombination. Mol Gen Genet. 1974;134(2):173–180. doi: 10.1007/BF00268418. [DOI] [PubMed] [Google Scholar]
  29. Ritchie D. A., Thomas C. A., Jr, MacHattie L. A., Wensink P. C. Terminal repetition in non-permuted T3 and T7 bacteriophage DNA molecules. J Mol Biol. 1967 Feb 14;23(3):365–376. doi: 10.1016/s0022-2836(67)80111-6. [DOI] [PubMed] [Google Scholar]
  30. Schlegel R. A., Thomas C. A., Jr Some special structural features of intracellular bacteriophage T7 concatemers. J Mol Biol. 1972 Jul 21;68(2):319–345. doi: 10.1016/0022-2836(72)90216-1. [DOI] [PubMed] [Google Scholar]
  31. Serwer P. Fast sedimenting bacteriophage T7 DNA from T7-infected Escherichia coli. Virology. 1974 May;59(1):70–88. doi: 10.1016/0042-6822(74)90207-4. [DOI] [PubMed] [Google Scholar]
  32. Stonington O. G., Pettijohn D. E. The folded genome of Escherichia coli isolated in a protein-DNA-RNA complex. Proc Natl Acad Sci U S A. 1971 Jan;68(1):6–9. doi: 10.1073/pnas.68.1.6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Strätling W., Knippers R. Function and purification of gene 4 protein of phage T7. Nature. 1973 Sep 28;245(5422):195–197. doi: 10.1038/245195a0. [DOI] [PubMed] [Google Scholar]
  34. Strätling W., Krause E., Knippers R. Fast sedimenting deoxyribonucleic acid in bacteriophage T7-infected cells. Virology. 1973 Jan;51(1):109–119. doi: 10.1016/0042-6822(73)90371-1. [DOI] [PubMed] [Google Scholar]
  35. Studier F. W. Bacteriophage T7. Science. 1972 Apr 28;176(4033):367–376. doi: 10.1126/science.176.4033.367. [DOI] [PubMed] [Google Scholar]
  36. Thomas C. A., Jr, Kelly T. J., Jr, Rhoades M. The intracellular forms of T7 and P22 DNA molecules. Cold Spring Harb Symp Quant Biol. 1968;33:417–424. doi: 10.1101/sqb.1968.033.01.048. [DOI] [PubMed] [Google Scholar]
  37. Watson J. D. Origin of concatemeric T7 DNA. Nat New Biol. 1972 Oct 18;239(94):197–201. doi: 10.1038/newbio239197a0. [DOI] [PubMed] [Google Scholar]
  38. Wolfson J., Dressler D., Magazin M. Bacteriophage T7 DNA replication: a linear replicating intermediate (gradient centrifugation-electron microscopy-E. coli-DNA partial denaturation). Proc Natl Acad Sci U S A. 1972 Feb;69(2):499–504. doi: 10.1073/pnas.69.2.499. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Worcel A., Burgi E. On the structure of the folded chromosome of Escherichia coli. J Mol Biol. 1972 Nov 14;71(2):127–147. doi: 10.1016/0022-2836(72)90342-7. [DOI] [PubMed] [Google Scholar]

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