Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1990 Aug;87(15):5729–5733. doi: 10.1073/pnas.87.15.5729

Amino acid sequence requirements for the association of apocytochrome c with mitochondria.

J R Sprinkle 1, T B Hakvoort 1, T I Koshy 1, D D Miller 1, E Margoliash 1
PMCID: PMC54401  PMID: 2165601

Abstract

To examine the amino acid sequence requirements for the biphasic association of Drosophila melanogaster apocytochrome c with mouse liver mitochondria in vitro, recombinant constructs of the protein were prepared. Removal of the C-terminal sequence to residue 58 had little influence, but truncation to residue 50 decreased the association to low levels and removal to residue 36 was even more effective. However, a mutant missing the segment between residues 35 and 66 was fully functional, but, when the C-terminal segment from residue 36 was replaced with a noncytochrome c sequence, the high-affinity phase of the association was lost. A mutant in which residues 90, 91, 92, 96, and 100 were replaced by lysine, leucine, proline, proline, and proline, respectively, to prevent the possible formation of the C-terminal alpha-helix and another mutant in which the C-terminal segment from residue 90 to residue 120 was a noncytochrome c sequence had normal association. In contrast, replacing lysine-5, -7, and -8 by glutamine, glutamic acid, and asparagine, respectively, resulted in loss of the high-affinity phase. The same mutations in the apoprotein lacking the segment between residues 35 and 66 caused, in addition, a decrease of the low-affinity phase association. Thus, the N-terminal region is most critical for apocytochrome c association, but alternative segments of the central and/or C-terminal region can be utilized, where noncytochrome c sequences are ineffective. These results emphasize the wide disparity between the structural requirements for association with mitochondria and for the production of a functional holoprotein.

Full text

PDF
5732

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Carlson S. S., Mross G. A., Wilson A. C., Mead R. T., Wolin L. D., Bowers S. F., Foley N. T., Muijsers A. O., Margoliash E. Primary structure of mouse, rat, and guinea pig cytochrome c. Biochemistry. 1977 Apr 5;16(7):1437–1442. doi: 10.1021/bi00626a031. [DOI] [PubMed] [Google Scholar]
  2. Das G., Hickey D. R., Principio L., Conklin K. T., Short J., Miller J. R., McLendon G., Sherman F. Replacements of lysine 32 in yeast cytochrome c. Effects on the binding and reactivity with physiological partners. J Biol Chem. 1988 Dec 5;263(34):18290–18297. [PubMed] [Google Scholar]
  3. Demel R. A., Jordi W., Lambrechts H., van Damme H., Hovius R., de Kruijff B. Differential interactions of apo- and holocytochrome c with acidic membrane lipids in model systems and the implications for their import into mitochondria. J Biol Chem. 1989 Mar 5;264(7):3988–3997. [PubMed] [Google Scholar]
  4. Dumont M. E., Ernst J. F., Hampsey D. M., Sherman F. Identification and sequence of the gene encoding cytochrome c heme lyase in the yeast Saccharomyces cerevisiae. EMBO J. 1987 Jan;6(1):235–241. doi: 10.1002/j.1460-2075.1987.tb04744.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Dumont M. E., Ernst J. F., Sherman F. Coupling of heme attachment to import of cytochrome c into yeast mitochondria. Studies with heme lyase-deficient mitochondria and altered apocytochromes c. J Biol Chem. 1988 Nov 5;263(31):15928–15937. [PubMed] [Google Scholar]
  6. Dumont M. E., Richards F. M. Insertion of apocytochrome c into lipid vesicles. J Biol Chem. 1984 Apr 10;259(7):4147–4156. [PubMed] [Google Scholar]
  7. Ernst J. F., Hampsey D. M., Stewart J. W., Rackovsky S., Goldstein D., Sherman F. Substitutions of proline 76 in yeast iso-1-cytochrome c. Analysis of residues compatible and incompatible with folding requirements. J Biol Chem. 1985 Oct 25;260(24):13225–13236. [PubMed] [Google Scholar]
  8. Hakvoort T. B., Sprinkle J. R., Margoliash E. Reversible import of apocytochrome c into mitochondria. Proc Natl Acad Sci U S A. 1990 Jul;87(13):4996–5000. doi: 10.1073/pnas.87.13.4996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Hartl F. U., Neupert W. Protein sorting to mitochondria: evolutionary conservations of folding and assembly. Science. 1990 Feb 23;247(4945):930–938. doi: 10.1126/science.2406905. [DOI] [PubMed] [Google Scholar]
  10. Hartl F. U., Pfanner N., Nicholson D. W., Neupert W. Mitochondrial protein import. Biochim Biophys Acta. 1989 Jan 18;988(1):1–45. doi: 10.1016/0304-4157(89)90002-6. [DOI] [PubMed] [Google Scholar]
  11. Holzschu D., Principio L., Conklin K. T., Hickey D. R., Short J., Rao R., McLendon G., Sherman F. Replacement of the invariant lysine 77 by arginine in yeast iso-1-cytochrome c results in enhanced and normal activities in vitro and in vivo. J Biol Chem. 1987 May 25;262(15):7125–7131. [PubMed] [Google Scholar]
  12. Jordi W., Zhou L. X., Pilon M., Demel R. A., de Kruijff B. The importance of the amino terminus of the mitochondrial precursor protein apocytochrome c for translocation across model membranes. J Biol Chem. 1989 Feb 5;264(4):2292–2301. [PubMed] [Google Scholar]
  13. Jordi W., de Kruijff B., Marsh D. Specificity of the interaction of amino- and carboxy-terminal fragments of the mitochondrial precursor protein apocytochrome c with negatively charged phospholipids. A spin-label electron spin resonance study. Biochemistry. 1989 Nov 14;28(23):8998–9005. doi: 10.1021/bi00449a007. [DOI] [PubMed] [Google Scholar]
  14. Kunkel T. A., Roberts J. D., Zakour R. A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol. 1987;154:367–382. doi: 10.1016/0076-6879(87)54085-x. [DOI] [PubMed] [Google Scholar]
  15. Luntz T. L., Schejter A., Garber E. A., Margoliash E. Structural significance of an internal water molecule studied by site-directed mutagenesis of tyrosine-67 in rat cytochrome c. Proc Natl Acad Sci U S A. 1989 May;86(10):3524–3528. doi: 10.1073/pnas.86.10.3524. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Margoliash E., Schejter A. Cytochrome c. Adv Protein Chem. 1966;21:113–286. doi: 10.1016/s0065-3233(08)60128-x. [DOI] [PubMed] [Google Scholar]
  17. Matner R. R., Sherman F. Differential accumulation of two apo-iso-cytochromes c in processing mutants of yeast. J Biol Chem. 1982 Aug 25;257(16):9811–9821. [PubMed] [Google Scholar]
  18. Matsuura S., Arpin M., Hannum C., Margoliash E., Sabatini D. D., Morimoto T. In vitro synthesis and posttranslational uptake of cytochrome c into isolated mitochondria: role of a specific addressing signal in the apocytochrome. Proc Natl Acad Sci U S A. 1981 Jul;78(7):4368–4372. doi: 10.1073/pnas.78.7.4368. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Nargang F. E., Drygas M. E., Kwong P. L., Nicholson D. W., Neupert W. A mutant of Neurospora crassa deficient in cytochrome c heme lyase activity cannot import cytochrome c into mitochondria. J Biol Chem. 1988 Jul 5;263(19):9388–9394. [PubMed] [Google Scholar]
  20. Nicholson D. W., Hergersberg C., Neupert W. Role of cytochrome c heme lyase in the import of cytochrome c into mitochondria. J Biol Chem. 1988 Dec 15;263(35):19034–19042. [PubMed] [Google Scholar]
  21. Nicholson D. W., Köhler H., Neupert W. Import of cytochrome c into mitochondria. Cytochrome c heme lyase. Eur J Biochem. 1987 Apr 1;164(1):147–157. doi: 10.1111/j.1432-1033.1987.tb11006.x. [DOI] [PubMed] [Google Scholar]
  22. Rietveld A., Jordi W., de Kruijff B. Studies on the lipid dependency and mechanism of the translocation of the mitochondrial precursor protein apocytochrome c across model membranes. J Biol Chem. 1986 Mar 15;261(8):3846–3856. [PubMed] [Google Scholar]
  23. Rietveld A., de Kruijff B. Is the mitochondrial precursor protein apocytochrome c able to pass a lipid barrier? J Biol Chem. 1984 Jun 10;259(11):6704–6707. [PubMed] [Google Scholar]
  24. Roise D., Schatz G. Mitochondrial presequences. J Biol Chem. 1988 Apr 5;263(10):4509–4511. [PubMed] [Google Scholar]
  25. Scarpulla R. C. Processed pseudogenes for rat cytochrome c are preferentially derived from one of three alternate mRNAs. Mol Cell Biol. 1984 Nov;4(11):2279–2288. doi: 10.1128/mcb.4.11.2279. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Sherman F., Stewart J. W., Margoliash E., Parker J., Campbell W. The structural gene for yeast cytochrome C. Proc Natl Acad Sci U S A. 1966 Jun;55(6):1498–1504. doi: 10.1073/pnas.55.6.1498. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Stuart R. A., Neupert W., Tropschug M. Deficiency in mRNA splicing in a cytochrome c mutant of neurospora crassa: importance of carboxy terminus for import of apocytochrome c into mitochondria. EMBO J. 1987 Jul;6(7):2131–2137. doi: 10.1002/j.1460-2075.1987.tb02480.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Swank R. T., Munkres K. D. Molecular weight analysis of oligopeptides by electrophoresis in polyacrylamide gel with sodium dodecyl sulfate. Anal Biochem. 1971 Feb;39(2):462–477. doi: 10.1016/0003-2697(71)90436-2. [DOI] [PubMed] [Google Scholar]
  29. Walasek O. F., Margoliash E. Transmission of the cytochrome c structural gene in horse-donkey crosses. J Biol Chem. 1977 Feb 10;252(3):830–834. [PubMed] [Google Scholar]
  30. Zimmermann R., Paluch U., Neupert W. Cell-free synthesis of cytochrome c. FEBS Lett. 1979 Dec 1;108(1):141–146. doi: 10.1016/0014-5793(79)81196-5. [DOI] [PubMed] [Google Scholar]
  31. Zoller M. J., Smith M. Oligonucleotide-directed mutagenesis of DNA fragments cloned into M13 vectors. Methods Enzymol. 1983;100:468–500. doi: 10.1016/0076-6879(83)00074-9. [DOI] [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES