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Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1990 Nov;87(21):8560–8564. doi: 10.1073/pnas.87.21.8560

Initiation of rolling-circle replication in pT181 plasmid: initiator protein enhances cruciform extrusion at the origin.

P Noirot 1, J Bargonetti 1, R P Novick 1
PMCID: PMC54996  PMID: 2236066

Abstract

Plasmid pT181 DNA secondary structures have been analyzed in vitro by nuclease S1 digestion and in vivo by bromoacetaldehyde treatment. A cruciform structure occurring at the pT181 replication origin in vitro is greatly enhanced by the binding of the plasmid-encoded initiator protein RepC. In vivo a DNA secondary structure also existed in the replication origin. Its frequency of formation was correlated with efficiency of RepC utilization. These data suggest that cruciform extrusion at the origin is involved in initiation of pT181 rolling-circle replication. A neighboring DNA structure influences the conformation of the origin in vivo.

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Selected References

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  1. Bramhill D., Kornberg A. Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome. Cell. 1988 Mar 11;52(5):743–755. doi: 10.1016/0092-8674(88)90412-6. [DOI] [PubMed] [Google Scholar]
  2. Carleton S., Projan S. J., Highlander S. K., Moghazeh S. M., Novick R. P. Control of pT181 replication II. Mutational analysis. EMBO J. 1984 Oct;3(10):2407–2414. doi: 10.1002/j.1460-2075.1984.tb02147.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Drew H. R., Weeks J. R., Travers A. A. Negative supercoiling induces spontaneous unwinding of a bacterial promoter. EMBO J. 1985 Apr;4(4):1025–1032. doi: 10.1002/j.1460-2075.1985.tb03734.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Gennaro M. L., Iordanescu S., Novick R. P., Murray R. W., Steck T. R., Khan S. A. Functional organization of the plasmid pT181 replication origin. J Mol Biol. 1989 Jan 20;205(2):355–362. doi: 10.1016/0022-2836(89)90346-x. [DOI] [PubMed] [Google Scholar]
  5. Gennaro M. L., Kornblum J., Novick R. P. A site-specific recombination function in Staphylococcus aureus plasmids. J Bacteriol. 1987 Jun;169(6):2601–2610. doi: 10.1128/jb.169.6.2601-2610.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Gruss A., Ehrlich S. D. The family of highly interrelated single-stranded deoxyribonucleic acid plasmids. Microbiol Rev. 1989 Jun;53(2):231–241. doi: 10.1128/mr.53.2.231-241.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Khan S. A., Carleton S. M., Novick R. P. Replication of plasmid pT181 DNA in vitro: requirement for a plasmid-encoded product. Proc Natl Acad Sci U S A. 1981 Aug;78(8):4902–4906. doi: 10.1073/pnas.78.8.4902. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Koepsel R. R., Khan S. A. Cleavage of single-stranded DNA by plasmid pT181-encoded RepC protein. Nucleic Acids Res. 1987 May 26;15(10):4085–4097. doi: 10.1093/nar/15.10.4085. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Koepsel R. R., Murray R. W., Khan S. A. Sequence-specific interaction between the replication initiator protein of plasmid pT181 and its origin of replication. Proc Natl Acad Sci U S A. 1986 Aug;83(15):5484–5488. doi: 10.1073/pnas.83.15.5484. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Koepsel R. R., Murray R. W., Rosenblum W. D., Khan S. A. Purification of pT181-encoded repC protein required for the initiation of plasmid replication. J Biol Chem. 1985 Jul 15;260(14):8571–8577. [PubMed] [Google Scholar]
  11. Kohwi-Shigematsu T., Gelinas R., Weintraub H. Detection of an altered DNA conformation at specific sites in chromatin and supercoiled DNA. Proc Natl Acad Sci U S A. 1983 Jul;80(14):4389–4393. doi: 10.1073/pnas.80.14.4389. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Kumar C. C., Novick R. P. Plasmid pT181 replication is regulated by two countertranscripts. Proc Natl Acad Sci U S A. 1985 Feb;82(3):638–642. doi: 10.1073/pnas.82.3.638. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Mojumdar M., Khan S. A. Characterization of the tetracycline resistance gene of plasmid pT181 of Staphylococcus aureus. J Bacteriol. 1988 Dec;170(12):5522–5528. doi: 10.1128/jb.170.12.5522-5528.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Novick R. P., Murphy E., Gryczan T. J., Baron E., Edelman I. Penicillinase plasmids of Staphylococcus aureus: restriction-deletion maps. Plasmid. 1979 Jan;2(1):109–129. doi: 10.1016/0147-619x(79)90010-6. [DOI] [PubMed] [Google Scholar]
  15. Novick R. Properties of a cryptic high-frequency transducing phage in Staphylococcus aureus. Virology. 1967 Sep;33(1):155–166. doi: 10.1016/0042-6822(67)90105-5. [DOI] [PubMed] [Google Scholar]
  16. O'Callaghan C. H., Morris A., Kirby S. M., Shingler A. H. Novel method for detection of beta-lactamases by using a chromogenic cephalosporin substrate. Antimicrob Agents Chemother. 1972 Apr;1(4):283–288. doi: 10.1128/aac.1.4.283. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Panayotatos N., Fontaine A. A native cruciform DNA structure probed in bacteria by recombinant T7 endonuclease. J Biol Chem. 1987 Aug 15;262(23):11364–11368. [PubMed] [Google Scholar]
  18. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Schnos M., Zahn K., Inman R. B., Blattner F. R. Initiation protein induced helix destabilization at the lambda origin: a prepriming step in DNA replication. Cell. 1988 Feb 12;52(3):385–395. doi: 10.1016/s0092-8674(88)80031-x. [DOI] [PubMed] [Google Scholar]
  20. Schon E., Evans T., Welsh J., Efstratiadis A. Conformation of promoter DNA: fine mapping of S1-hypersensitive sites. Cell. 1983 Dec;35(3 Pt 2):837–848. doi: 10.1016/0092-8674(83)90116-2. [DOI] [PubMed] [Google Scholar]
  21. Wang P. Z., Projan S. J., Leason K. R., Novick R. P. Translational fusion with a secretory enzyme as an indicator. J Bacteriol. 1987 Jul;169(7):3082–3087. doi: 10.1128/jb.169.7.3082-3087.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]

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