Zebrafish Get Connected: Investigating Neurotransmission Targets and Alterations in Chemical Toxicity

Abstract

Neurotransmission is the basis of neuronal communication and is critical for normal brain development, behavior, learning, and memory. Exposure to drugs and chemicals can alter neurotransmission, often through unknown pathways and mechanisms. The zebrafish (Danio rerio) model system is increasingly being used to study the brain and chemical neurotoxicity. In this review, the major neurotransmitter systems, including glutamate, GABA, dopamine, norepinephrine, serotonin, acetylcholine, histamine, and glutamate are surveyed and pathways of synthesis, transport, metabolism, and action are examined. Differences between human and zebrafish neurochemical pathways are highlighted. We also review techniques for evaluating neurological function, including the measurement of neurotransmitter levels, assessment of gene expression through transcriptomic analysis, and the recording of neurobehavior. Finally examples of chemical toxicity studies evaluating alterations in neurotransmitter systems in the zebrafish model are reviewed.

1. Introduction

Neurotransmission is the basis of neuronal communication and is critical for normal brain development, behavior, learning and memory, and even maintenance of life. The nervous system is exceedingly complex, and many enzymes, transporters, and receptors all work in concert to maintain these functions. Neurotransmission can be altered by exposure to drugs, pharmaceuticals, chemotherapeutic agents, radiation, food additives, and environmental toxicants including pesticides and heavy metals ([1,2] and as reviewed by [3,4,5,6]). Alterations in neurotransmission have been linked to a number of diseases including movement disorders, neuropsychiatric disorders, and depression (reviewed by [7,8,9]).

The zebrafish (Danio rerio) research model is increasingly being used in neurotoxicity studies (as reviewed by [3,10,11,12,13]). Zebrafish share the common neurotransmitter pathways with mammals and have similar neuroanatomy in many areas such as the spinal cord, hindbrain and retina, but as the brain develops by eversion rather than inversion, some classical regions of the mammalian brain, such as the hippocampus, amygdala, and substantia nigra, are not present as such in zebrafish. The function of these areas appears to be maintained elsewhere in the brain, allowing functional comparisons between zebrafish and mammals [14]. As an additional resource, Mueller and Wullimann have recently published a second edition of their “Atlas of Early Zebrafish Brain Development”, which characterizes neuronal development and provides excellent figure panels for neuroanatomy [15].

Although the neurochemistry of zebrafish has been reviewed previously [11,16], this review will specifically focus on reviewing the application of the zebrafish in chemical toxicology studies investigating adverse impacts to neurotransmitter systems. In addition, this review includes new research findings published since the last reviews on zebrafish neurochemistry, updated terminology, and aims to serve as a reference for the major neurotransmitter systems.

2. Zebrafish as a Biomedical Model

The zebrafish is a well-recognized biomedical research model. Zebrafish have been utilized in many scientific disciplines including developmental biology, drug discovery, pharmacology, genetics, and toxicology (reviewed in [17,18,19,20]). The zebrafish has many strengths as a research model. The adults are small (up to 3 cm), and large colonies can be easily maintained with basic husbandry. Zebrafish have a short generational interval, with sexual maturity beginning at 3–4 months post fertilization (mpf). Once mature, a single breeding pair of zebrafish can produce 100–200 fertilized embryos per spawning. The embryos develop ex utero, are nearly transparent, and are easily manipulated for developmental studies [21,22]. Zebrafish are also ideal for genetic manipulation, with ex utero fertilization allowing for the production of haploid embryos [23].

The zebrafish genome has been mapped and approximately 70%–80% of zebrafish genes share homology with the human genome, and 84% of genes associated with disease in humans are also present in zebrafish [24,25]. Furthermore, metabolic pathways are highly conserved between zebrafish and mammals, making zebrafish well suited to mechanism focused research [18].

The early teleost had a whole-genome duplication event approximately 320–350 million years ago [26,27]. Although nearly half of these gene duplicates are thought to have been lost within the first 75 million years, it is hypothesized that the remaining genes may have undergone a process of subfunctionalization or neofunctionalization [28,29]. Genes with a single copy in zebrafish are referred to as being orthologs to human genes if they share a common gene origin, while genes with two copies in zebrafish are termed paralogous and may have sub- or neofunctionalization [30]. The teleost whole-genome duplication event has important implications for the study of gene functions in biological pathways, including the neurotransmitter systems where two paralogs may have divergent functions.

3. Review of Neurotransmitter Systems

Zebrafish share the common neurotransmitter systems with other vertebrates, and therefore can serve as a model system for neurotoxicity. Although there are many more similarities than not, there are some noteworthy differences between mammals and zebrafish within the neurotransmitter systems, mainly in the number and name of genes encoding proteins, as a result of the teleost gene duplication event. In general, the synthesis and metabolism pathways are shared between the brain of mammals and teleosts. The major shared neurotransmitter systems are reviewed and differences in relevant genes, anatomy, and physiology are highlighted below.

3.1. Glutamate

Glutamate is the most common neurotransmitter in the mammalian and teleost brain, with an expected 80%–90% of mammalian synapses using glutamate as the neurotransmitter [31]. Glutamate is the primary excitatory neurotransmitter with functions associated with neurodevelopment, learning and memory, and general cognition as well as neurodegenerative diseases and pathologic conditions such as epilepsy, amnesia, cerebral ischemia, motor neuron diseases, pain, and psychosis [32,33]. Glutamate is also associated with synaptic plasticity and, depending on the receptor activated, may act to modulate neural impulses received by the postsynaptic neuron rather than excite [34,35].

Glutamate, an amino acid, is a member of multiple metabolic pathways including the tricarboxylic acid (TCA) cycle and is a precursor of many biologically important molecules including amino acids l-proline and l-arginine as well as the neurotransmitter γ-aminobutyric acid (GABA) and glutathione [33,36]. Most of the glutamate within the brain is produced from α-ketoglutarate, an intermediate of the TCA cycle. α-ketoglutarate is transaminated with another amino group, usually from aspartate, to form glutamate. This transamination is typically performed by aspartate aminotransferase, an enzymatic protein encoded by the glutamic-oxaloacetic transaminase 1 (GOT1) gene; however, other aminotransferases such as glutamic-pyruvate transaminases (GPT) can also produce glutamate [36].

Within neurons, the majority of glutamate is stored in synaptic vesicles. In mammals, the solute carrier (SLC) family SLC17 members SLC17A7, SLC17A6, and SLC17A8 (also known as the vesicular glutamate transporter family (VGLUT) 1, 2, 3, respectively) are responsible for transporting glutamate into synaptic vesicles, although only SLC17A7 and SLC17A6 are found in glutamatergic neurons [37]. Once released into the synaptic cleft, glutamate binds to receptors on postsynaptic neurons and adjacent glial cells. Most glutamate receptors are located on the dendritic spines of the postsynaptic neurons [38].

Glutamate receptors fall into two categories, ionotropic and metabotropic. Ionotropic receptors act by opening a cation channel after binding to the target and are thus part of the ligand-gated ion channel superfamily. The ligand-gated ion channel superfamily includes the ionotropic glutamate receptors, GABA_A receptors, 5-hydroxytryptamine 3 receptor (5-HT3), nicotinic acetylcholine receptors, and glycine receptors as reviewed by Collingridge et al. and Keramidas et al. [39,40]. The superfamily shares a common structure, with each channel being composed of 5 identical or homologous subunits surrounding the central pore [41]. Each subunit has an extensive extracellular, hydrophilic N-terminus, 4 transmembrane domains that form the ion channel, and an extracellular C-terminus. The superfamily can be divided into subfamilies which include the ionotropic glutamate receptors, the cys-loop receptor family, and ATP-gated channels. As reviewed by Connolly and Wafford [42] and Kozuska and Paulsen [43], the cys-loop receptor family is characterized by a loop on the N-terminus formed by a disulfide bond between two cysteines and includes the GABA_A, 5-HT3, nicotinic acetylcholine, and glycine receptors. Each class of ligand-gated ion channels can be further divided based on if the channel is anion or cation specific, with glycine and GABA_A receptors being anionic and 5-HT3 and nicotinic acetylcholine receptors being cationic for example [40].

Metabotropic receptors act through second messenger systems. The term metabotropic is typically applied to a family of glutamate receptors that are G-protein-coupled receptors; however, GABA_B receptors, catecholamine receptors, all serotonin receptors except for 5-HT₃, muscarinic acetylcholine receptors, and histamine receptors also act through second messenger systems and can be classified as metabotropic receptors due to their activation of G proteins and a variety of intracellular signaling cascades upon target binding [44,45,46]. As reviewed by Katritch et al., G-protein-coupled receptors have a shared structure with seven transmembrane domains and represent the largest superfamily of proteins [47]. A full description of G-protein-coupled receptors is beyond the scope of this review, but the topic has been extensively reviewed previously [48,49] and is commonly found in textbooks.

The functions, pharmacology, and mechanisms of the glutamate receptor types have been extensively reviewed [33,34,35,37,50,51,52]; key information is summarized here.

Ionotropic glutamate receptors are grouped into three classes: N-methyl d-aspartate (NMDA), α-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid (AMPA), and kainite (KA). The classes were named according to selective agonists and each class is made up of multiple gene families which code for individual receptor subunits. The NMDA class receptor has seven genes which code for glutamate ionotropic receptor NMDA type subunits (GRIN, also known as glutamatergic ionotropic NDMA type; GLuNs): GRIN1, GRIN2A, GRIN2B, GRIN2C, GRIN2D, GRIN3A, and GRIN3B. AMPA receptors are made up of the glutamate ionotropic receptor AMPA type subunits (GRIA, also known as glutamatergic ionotropic AMPA type; GluA), GRIA1, GRIA2, GRIA3, and GRIA4, while glutamate ionotropic receptor kainate type subunits (GRIK, also known as glutamatergic ionotropic kainate type receptors; GluKs) fall into 5 families, GRIK1, GRIK2, GRIK3, GRIK4, and GRIK5 [52,53]. Upon binding glutamate, AMPA and KA receptors rapidly open ion channels that favor sodium conductance, while NMDA channels favor calcium conductance and have slower kinetics [51,52].

Metabotropic receptors are organized into three classes or groups, Group I, Group II, and Group III receptors. Group I receptors include GRM1 and GRM5. Group I receptors classically are coupled to G_q/G₁₁ proteins that activate inositol triphosphate (IP3) second messenger signaling and increase intracellular calcium levels, leading to postsynaptic depolarization [34]. Additional signaling pathways have also been recognized, with Group I receptors also acting through other G_q proteins, G_i/o proteins, G_s proteins, and independent of G proteins to activate alternative pathways. Downstream targets include phospholipase D, and protein kinase pathways such as Jun kinase, the mitogen-activated protein kinase/extracellular receptor kinase (MAPK/ERK) pathway, and the mammalian target of rapamycin (MTOR)/p70 S6 kinase pathway [54,55,56,57]. Group II receptors include the GRM2 and GRM3 subtypes and couple predominantly through G_i/G_o proteins. These proteins act by decreasing 3′,5′-cyclic adenosine monophosphate (cAMP) levels through the inhibition of adenylyl cyclase, resulting in a hyperpolarization of the postsynaptic membranes [34]. Group III receptors are the GRM4, GRM6, GRM7, and GRM8 families and they also act by inhibiting adenylyl cyclase and decreasing intracellular cAMP levels. Group II and Group III members can also act through alternative signaling, similar to Group I receptors [50,58,59].

Glutamate is also taken up into glia and neurons via the SLC1A family of genes, also known as the high affinity excitatory amino acid transporters (EAATs). This gene family regulates the levels of extracellular glutamate to prevent excitotoxicity. In astrocytes and oligodendroglia, glutamate can be used in the TCA cycle for the production of energy, used for protein synthesis, or cycled back to glutamine. Glutamate-ammonia ligase (GLUL; glutamine synthetase) causes waste ammonia to react with glutamate to form glutamine, thus detoxifying the ammonia in the process. Glutamine is exported out of the glial cells into the extracellular fluid by SN/SA transporters in the SLC38 class (also known as SNATs) of solute transporters [53]. The free extracellular glutamine can then be taken back into neurons. Within neurons, phosphate-active glutaminase (GLS or PAG) recycles the glutamine to glutamate once again. Much of the glutamate within the brain is recycled through this glutamine cycle. Glutamate can be further processed into GABA via glutamate decarboxylase in GABAergic neurons.

Table 1 outlines human genes important for glutamatergic synthesis, metabolism, and signaling and known zebrafish paralogs. In most cases, zebrafish have multiple paralogs for each human gene; however, some genes in zebrafish only have a single ortholog. For example, zebrafish express got1 (glutamic-oxaloacetic transaminase 1), the ortholog of GOT1, while there are two paralogs each of the vesicular glutamate transporters SLC17A7 and SLC17A6 (slc17a7a and slc17a7b, and slc17a6a and slc17a6b, respectively), with only one ortholog of SLC17A8 (slc17a8). Zebrafish have three paralogs of glutamate-ammonia ligase GLUL (glula, glulb, and glulc) and two paralogs of glutaminase GLS (glsa and glsb) [60]. Zebrafish have 8 paralogous genes that code for AMPA type receptor subunits, 6 genes that code for KA type subunits, and 13 putative genes that code for NMDA type ionotropic receptors [61,62,63]. Humans have 8 subtypes of metabotropic receptors divided into three groups while zebrafish have 12 receptor subtypes similarly divided [64,65]. Currently there are 13 members of the slc1a family of EAATs transporters, with slc1a8a, slc1a8b, and slc1a9 lacking corresponding paralogs in mammals due to a gene loss event by therian mammals [66,67].

Table 1.

Zebrafish genes involved in glutamate neurotransmission.

Common Name	Human	Zebrafish	Gene ID	RefSeq	ZFIN ID
Glutamic-oxaloacetic transaminase 1	GOT1	got1	406330	NM_213057	ZDB-GENE-040426-2003
Vesicular glutamate transporter 1 (VGLUT1)	SLC17A7	slc17a7a	795293	NM_001098755	ZDB-GENE-050105-5
		slc17a7b	100331980	XM_009297642	ZDB-GENE-131125-32
Vesicular glutamate transporter 2 (VGLUT2)	SLC17A6	slc17a6a	494492	NM_001009982	ZDB-GENE-050105-4
		slc17a6b	100149756	NM_001128821	ZDB-GENE-030616-554
Vesicular glutamate transporter 3 (VGLUT3)	SLC17A8	slc17a8	563467	NM_001082835	ZDB-GENE-060503-416
Glutamate-ammonia ligase (Glutamine synthetase)	GLUL	glula	100000775	NM_181559	ZDB-GENE-030131-688
		glulb	336473	NM_182866	ZDB-GENE-030131-8417
		glulc	566165	NM_001075114	ZDB-GENE-060929-540
Glutaminase	GLS	glsa	564147	NM_001045044	ZDB-GENE-050204-3
		glsb	564746	XM_688079	ZDB-GENE-030616-550
Ionotropic Reptors
AMPA Receptors	GRIA1	gria1a	798689	NM_205598	ZDB-GENE-020125-1
		gria1b	403044	NM_205730	ZDB-GENE-020125-2
	GRIA2	gria2a	170450	NM_131894	ZDB-GENE-020125-3
		gria2b	170451	NM_131895	ZDB-GENE-020125-4
	GRIA3	gria3a	170452	NM_198339	ZDB-GENE-020125-5
		gria3b	368416	NM_198360	ZDB-GENE-030616-53
	GRIA4	gria4a	407735	NM_214806	ZDB-GENE-020125-7
		gria4b	336069	NM_212752	ZDB-GENE-030131-8013
Kainate Receptors	GRIK1	grik1a	798001	XM_009305317	ZDB-GENE-030131-6502
		grik1b	561540	XM_684948	ZDB-GENE-070821-1
	GRIK2	grik2	556013	XM_009300832	ZDB-GENE-080414-1
	GRIK3	grik3	100334689	XM_009300849.1	-
	GRIK4	grik4	556582	XM_009291736	ZDB-GENE-070821-5
	GRIK5	grik5	798791	NM_001328156	ZDB-GENE-070821-6
NMDA Receptors	GRIN1	grin1a	767745	NM_001076714	ZDB-GENE-051202-1
		grin1b	100005675	NM_001144131	ZDB-GENE-051202-2
	GRIN2A	grin2aa	563297	XM_686662	ZDB-GENE-070424-129
		grin2ab	570493	XM_009306215	ZDB-GENE-070424-223
	GRIN2B	grin2ba	-	-	ZDB-GENE-090821-2
		grin2bb	559976	NM_001128337	ZDB-GENE-061207-27
	GRIN2C	grin2ca	100003342	XM_002661129	ZDB-GENE-070822-3
		grin2cb	100333648	XM_009306796	ZDB-GENE-100308-2
	GRIN2D	grin2da	449864	XM_009294079	ZDB-GENE-041008-124
		grin2db	-	-	ZDB-GENE-100920-7
	GRIN3A	grin3a	564832	XM_009305086	ZDB-GENE-130530-780
		grin3ba	566411	XM_009298558	ZDB-GENE-070912-354
	GRIN3B	grin3bb	100333101	XM_009305920	ZDB-GENE-131122-77
Metabotropic Receptors
Group I	GRM1	grm1a	555576	NM_001044788	ZDB-GENE-030131-7893
		grm1b	100150246	NM_001302252	ZDB-GENE-090821-3
	GRM5	grm5a	568406	NM_001328710	ZDB-GENE-090821-9
		grm5b	100332913	NM_001302238	ZDB-GENE-090821-6
Group II	GRM2	grm2a	336153	NM_001302225	ZDB-GENE-030131-8097
		grm2b	564461	NM_001287547	ZDB-GENE-060201-5
	GRM3	grm3	565256	NM_001128343	ZDB-GENE-061009-13
Group III	GRM4	grm4	567181	NM_001302241	ZDB-GENE-030131-5781
	GRM6	grm6a	568484	NM_001123292	ZDB-GENE-060208-1
		grm6b	565450	NM_001080020	ZDB-GENE-021120-2
	GRM7	*	-	-	-
	GRM8	grm8a	792371	NM_001302228	ZDB-GENE-110421-2
		grm8b	569768	NM_001287539	ZDB-GENE-110421-3
Glutamate Transporters	SLC1A1	slc1a1	436939	NM_001002666	ZDB-GENE-040718-414
	SLC1A2	slc1a2a	560802	NM_001190305	ZDB-GENE-100422-11
		slc1a2b	335836	NM_199979	ZDB-GENE-030131-7779
	SLC1A3	slc1a3a	323439	NM_212640	ZDB-GENE-030131-2159
		slc1a3b	556181	NM_001190303	ZDB-GENE-090708-3
	SLC1A4	slc1a4	368885	NM_001002513	ZDB-GENE-030616-566
	SLC1A5	slc1a5	100002129	NM_001190755	ZDB-GENE-070501-4
	SLC1A6	slc1a6	559270	NM_001109703	ZDB-GENE-071004-45
	SCL1A7	slc1a7a	100170783	NM_001291344	ZDB-GENE-061009-24
		slc1a7b	100463517	NM_001190760	ZDB-GENE-101111-7
	SLC1A8	slc1a8a	570702	XM_694211	ZDB-GENE-101111-8
		slc1a8b	564474	NM_001190816	ZDB-GENE-070912-552
	SLC1A9	slc1a9	100463516	NM_001190759	ZDB-GENE-101111-9

* Zebrafish grm2b has previously been known as grm7.

During embryonic and post embryonic neurogenesis, proneural and neuronal cells express genes coding for basic helix-loop-helix (Bhlh) transcription factors and the patterns of expression can help identify neuronal populations [68]. The expression of neurogenin 1 (Neurog1)/Neurogenic differentiation 1 (Neurod; NeuroD1) has been linked to the development of glutamatergic neurons [69].

Identification of glutamatergic neurons in adult brains is often made based on the presence of transporter proteins. The SLC17A (VGLUT) genes SLC17A6 and SLC17A7 are often used as markers of glutamatergic neurons; however, glial cells can also express these transporters [33,70,71]. Glutamate itself is a poor marker due to its role in many metabolic pathways. Although the various receptor subunits are differentially expressed throughout the brain, glutamate receptors are also expressed on glia [72]. For a further account on distribution of these receptors in zebrafish please see Haug et al. [64] and Huang et al. [65].

3.2. GABA

GABA is the major inhibitory neurotransmitter in the central nervous system (CNS) and GABAergic neurons are widely present throughout the brain. As an inhibitory neurotransmitter, GABA mainly acts to modulate neural systems and the activity of postsynaptic cells [73]. GABA has been associated with the regulation of neural transmission and perturbances in the GABAergic system have been associated with epilepsy, depression, schizophrenia, and sleep dysfunction [74,75,76].

As reviewed by Ben-Ari and Reynolds et al. [77,78], in early development neurons have higher intracellular levels of chloride than mature neurons due to the expression of the sodium-potassium-chloride cotransporter 1 (NKCC1; SLC12A2) in the absence of potassium-chloride cotransporter 2 (KCC2; SLC12A5) expression [79]. Therefore, the classic inhibitory neurotransmitters GABA and glycine act to depolarize, and excite the immature neuron. Concurrent with neuronal maturation, SLC12A5 is expressed and this transporter reverses the chloride gradient, establishing the adult chloride gradient and causing GABA and glycine to act as inhibitory neurotransmitters [80].

GABA is synthesized in neurons through the GABA shunt. In the first step, α-ketoglutarate from the TCA cycle is transaminated by the 4-aminobutyrate transaminase (ABAT; GABA α-ketoglutarate transaminase; GABA-T) enzyme into l-glutamic acid. In the second step, glutamate decarboxylase (GAD) removes the carboxyl group and produces GABA. In mammals, two genes code for GAD, GAD1 and GAD2 (also known as GAD₆₇ and GAD₆₅, respectively) [81].

GABA is packaged into synaptic vesicles by the SLC32A1 solute carrier, also known as Vesicular GABA transporter (VGAT). Upon presynaptic depolarization, the vesicles are released into the synaptic space. SLC6A family members, SLC6A1, SLC6A11, and SLC6A12, also known as GABA transporters (GAT1, GAT3, and BGT1) are responsible for transporting GABA out of the synapse [82]. SLC6A13 (GAT2) does not appear to have a significant role in the brain [73]. Neurons may recycle the collected GABA back into synaptic vesicles or GABA can be metabolized to succinic semialdehyde by ABAT [83]. In glia, which lack GAD, the succinic semialdehyde is oxidized by succinic semialdehyde dehydrogenase (SSADH; aldehyde dehydrogenase 5 family member A1; ALDH5A) into succinic acid, which enters the TCA cycle and can be cycled through to α-ketoglutarate to again produce glutamine [73,84].

GABA has two classes of receptors: GABA_A and GABA_B. As mentioned previously, GABA_A receptors are ligand-gated ion channel receptors and mediate postsynaptic membrane hyperpolarization through the influx of chloride through their integral channel [85]. Like all ligand-gated ion channels, GABA_A receptors are pentamers and 19 subunits in 7 classes provide basis of the regional variations and differential actions [86].

GABA_B receptors are metabotropic and therefore can mediate a variety of effects through their coupling with G proteins [87,88,89]. GABA_B receptors can activate certain potassium channels, regulate IP3, or inhibit cAMP production [89]. Presynaptic GABA receptors may inhibit presynaptic neurotransmitter release [90]. Two GABA_B receptor subunits have been identified in mammals, GABABR1 and GABABR2 (reviewed in [87,91]).

Table 2 list genes important for the synthesis, metabolism, and action of GABAergic neurons in humans and the known zebrafish paralogs. Zebrafish have a single copy of some GABAergic genes, such as the transaminase abat, the VGAT transporter slc32a1, and aldh5a1 (SSADH). Other genes such as gad1 (glutamate decarboxylase), slc6a1 (GAT1), and slc6a11 (GAT3) have two zebrafish paralogs [92]. Corresponding zebrafish orthologs or paralogs have not been identified for all human GABA receptor subunits (e.g., GABRA2 and GABRA4), but some human genes have more than one paralog in zebrafish (e.g., GABBR1: gabbr1a and gabbr1b).

Table 2.

Zebrafish genes involved in GABA neurotransmission.

Common Name	Human	Zebrafish	Gene ID	RefSeq	ZFIN ID
Na-K-Cl cotransporter 1 (NKCC1)	SLC12A2	slc12a2	415170	NM_001002080	ZDB-GENE-040625-53
K-Cl cotransporter 2 (KCC1)	SLC12A5	slc12a5	797331	NM_001302243	ZDB-GENE-120927-3
4-aminobutyrate transaminase	ABAT	abat	378968	NM_201498	ZDB-GENE-031006-4
Glutamate decarboxylase	GAD1	gad1a	100329827	XM_005167412	ZDB-GENE-070912-472
		gad1b	378441	NM_194419	ZDB-GENE-030909-3
	GAD2	gad2	550403	NM_001017708	ZDB-GENE-030909-9
Vesicular GABA transporter (VGAT)	SLC32A	slc32a1	798575	NM_001080701	ZDB-GENE-061201-1
GABA Transporter 1 (GAT1)	SLC6A1	slc6a1a	692318	NM_001045287	ZDB-GENE-060519-23
		slc6a1b	492490	NM_001007362	ZDB-GENE-041114-57
		slc6a1l	568985	XM_692346	ZDB-GENE-041210-296
GABA Transporter 3 (GAT3)	SLC6A11	slc6a11a	558960	NM_001098387	ZDB-GENE-030131-3729
		slc6a11b	100150472	XM_001919885	ZDB-GENE-121116-2
Succinic semialdehyde dehydrogenase	ALDH5A	aldh5a1	565235	NM_001110468	ZDB-GENE-070228-2
GABA Receptors
GABAA Receptor Subunit α	GABRA1	gabra1	768183	NM_001077326	ZDB-GENE-061013-194
	GABRA2	gabra2	100150704	XM_009307207	ZDB-GENE-141216-16
	GABRA3	gabra3	100538116	XM_009295708	ZDB-GENE-091204-365
	GABRA4	-	-	-	-
	GABRA5	gabra5	799124	XM_001339475	ZDB-GENE-081104-30
	GABRA6	gabra6a	393704	NM_200731	ZDB-GENE-040426-1692
		gabra6b	559693	XM_002667357	ZDB-GENE-080815-1
GABAA Receptor Subunit β	GABRB1	gabrb1	100331377	XM_002664133	ZDB-GENE-090313-230
	GABRB2	gabrb2	336252	NM_001024387	ZDB-GENE-030131-8196
		gabrb2l	100332196	XM_005174450	ZDB-GENE-111215-5
	GABRB3	gabrb3	566922	XM_005166079	ZDB-GENE-101102-2
	-	gabrb4	566514	XM_005173874XM_017353011	ZDB-GENE-070424-211
GABAA Receptor Subunit γ	GABRG1	-	-	-	-
	GABRG2	gabrg2	553402	NM_001256250	ZDB-GENE-091118-65
	GABRG3	gabrg3	567057	XM_009302568	ZDB-GENE-070718-5
GABAA Receptor Subunit δ	GARBD	gabrd	571422	XM_695007	ZDB-GENE-081105-170
GABAA Receptor Subunit π	GABRP	gabrp	566633	XM_005173293	ZDB-GENE-081028-62
GABAA Receptor Subunit ρ	GABRR1	gabrr1	568984	NM_001025553	ZDB-GENE-040724-212
	GABR2	gabrr2a	751659	NM_001045376	ZDB-GENE-060825-164
		gabrr2b	569032	XM_692394	ZDB-GENE-041014-174
	GABR3	gabrr3a	570876	NM_001128760	ZDB-GENE-080722-20
		gabrr3b	-	-	ZDB-GENE-131120-131
GABAA Receptor Subunit ζ	GABRZ	gabrz	561738	NM_001114742	ZDB-GENE-080303-26
GABAB Receptor 1	GABBR1	gabbr1a	373873	XM_689405	ZDB-GENE-030904-5
		gabbr1b	558708	XM_005170102	ZDB-GENE-060503-5
GABAB Receptor 2	GABBR2	gabbr2	560267	NM_001144043	ZDB-GENE-060503-620

GAD has only been identified in GABAergic neurons, therefore providing a specific marker for GABA producing neurons. Additionally, zebrafish achaete-scute homolog 1a (Zash1a) expression has been linked to the development of GABA producing, inhibitory neurons, and has been used as a marker for GABAergic neurons during development [93,94].

In zebrafish, GABA is widely produced in the brain and spinal cord by interneurons [95]. The postembryonic (3 days post fertilization; dpf) subpallium, preoptic region, ventral and sections of the dorsal thalamus, and hypothalamus have been shown to produce GABA [93]. In the adult, GABA has been identified in the olfactory bulb, subpallium, preoptic, pretectal, ventral thalamic, hypothalamic, and posterior tubercular nuclei with scattered Gad1 positive cells in the pallial zones and the bed nucleus of the stria medullaris [96,97]. GABA, Gad2, Gabra1, and Gabbr1 are expressed in the zebrafish cerebellum and have a similar distribution to mammals [98].

3.3. Catecholamines

Dopamine, norepinephrine (noradrenaline), and epinephrine (adrenaline) are the major catecholamine neurotransmitters. Structurally, this group is characterized by a catechol group (benzene group with two adjacent hydroxyl groups), with an ethylamine side chain and an amine group. Catecholamines are considered modulatory neurotransmitters and have been linked to reward, movement, memory, and neuropsychiatric disorders [99,100,101].

Catecholamines are formed from the amino acid tyrosine and oxygen. Tyrosine hydroxylase (tyrosine 3-monooxygenase; TH) is the first enzyme in the synthesis pathway and is the rate limiting step. TH produces 3,4-dihydroxyl-l-phenylalanine (l-DOPA) with (6R)-l-erythro-tetrahydrobiopterin (BH4) and Fe²⁺ acting as cofactors in the hydroxylase step [102]. l-DOPA is converted to dopamine (DA) by the enzyme aromatic amino acid decarboxylase (AAAD), also known as DOPA decarboxylase [103]. AAAD is the preferred enzyme name as AAAD is also important in the monoamine serotonin synthesis pathway [82]. Although TH immunoreactivity is considered specific for dopaminergic neurons, AAAD can be found in non-monoamine producing neurons and glial cells. AAAD can also alternatively produce trace amines such as tryptamine, tyramine, and 2-phenylethylamine [104].

In noradrenergic and adrenergic neurons DA is converted to norepinephrine (NE) by dopamine-β-hydroxylase (dopamine β-monooxygenase; DBH) and NE can be further modified by phenylethanolamine-N-methyltransferase (PNMT) to epinephrine (EP).

Catecholamines are transported into vesicles through members of the SLC18 family, namely SLC18A2 (also known as VMAT2) in the brain (as reviewed by [105,106]). SLC18A2 can transport serotonin and histamine as well as catecholamines. Dopamine and norepinephrine transporters belong to the SLC6 family of carriers, with, at least in mammals, SLC6A2 functioning as the norepinephrine transporter (NET), and SLC6A3 as the dopamine transporter (DAT) [107].

Catecholamines are metabolized by a monoamine oxidase (MAO) enzyme. In humans, there are two isoforms of MAO in mammals, MAO-A and MAO-B, with different substrate specificity, pharmacology, and anatomic localization [108]. The catecholamine substrates are degraded into aldehydes, and aldehyde dehydrogenase and aldehyde reductase further degrade the products into alcohols or glycols respectively. Catechol-O-methyltransferase (COMT) adds a methyl group to catecholamines and their metabolites, which assists in elimination of the neurotransmitters and their metabolites. A major DA metabolite is 3,4-dihydroxyphenylacetic acid (DOPAC), which is the product of MAO and aldehyde dehydrogenase. DOPAC can be further metabolized by COMT to form homovanillic acid (HVA). Norepinephrine is mostly metabolized by MAO and aldehyde reductase, forming 3,4-dihydroxyphenylglycol (DHPG). Likewise, DHPG can be further metabolized to 3-methoxy-4-hydroxyphenylgylcol (MHPG) [104].

Catecholamines bind to G-protein-coupled receptors to modulate neurotransmission. As reviewed by Callier et al., there are five dopaminergic receptors in mammals: D1–D5, with D1 and D5 (D1-like) and D2–D4 (D2-like) sharing similar mechanisms [109]. D1-like receptors classically activate G_s G-proteins causing an increase in cAMP while D2-like activate Gα_i/G_o G-proteins which inhibits adenylyl cyclase activity [110]. Beaulieu et al. extensively reviewed the mechanisms of dopamine receptor signaling [111]. Norepinephrine has nine receptors organized into three families, α₁, α₂, and β, each containing three receptors. α₁ receptors activate G_q/G₁₁ proteins and activate phospholipase C and increase intra cellular calcium and protein kinase C activation. The α₂ adrenergic receptors are coupled to G_i/G_o proteins and inhibit adenylyl cyclase and stimulate phospholipase A2. The β adrenergic receptors are coupled to G_s and activate adenylyl cyclase [104].

Originally two Th encoding paralogs were identified in teleosts, th1 and th2 [112]. th1-negative, th2-positive neurons were identified in zebrafish brain [113,114,115] and although these neurons appeared to be immunoreactive for slc18a2 (vmat2), aaad, and slc6a3 (dat), consistent with a dopaminergic phenotype, it was discovered that the gene encoded by th2 appears to function as a tryptophan hydroxylase when isolated in vitro [115,116]. Therefore, th1 is referred to as th by the Zebrafish Information Network (ZFIN) and is considered the only tyrosine hydroxylase in zebrafish. Currently, only one ortholog of AAAD (aaad), DBH (dbh), and of the transporters SLC18A2 (slc18a2), SLC6A2 (slc6a2), and SLC6A3 (slc6a3) have been identified. Although mammals have two isozymes, MAO-A and MAO-B, zebrafish have only one paralogous enzyme, Mao (also known as Zmao) [117]. Zebrafish Mao may have a structure and function more similar to MAO-A, but is inhibited by deprenyl, a MAO-B specific inhibitor [118,119]. Two putative COMT genes have been identified, comta and comtb. However, the gene products have not been fully characterized, and some protein products may not be functional [16,120]. Table 3 outlines known paralogs of dopamine and adrenergic receptors [121,122]. The receptor genes drd1a and drd1b likely have D1-like activity and the other receptor genes likely have D2-like functions [122].

Table 3.

Zebrafish genes involved in catecholamine neurotransmission.

Common Name	Human	Zebrafish	Gene ID	RefSeq	ZFIN ID
Tyrosine hydroxylase	TH	th	30384	NM_131149	ZDB-GENE-990621-5
Aromatic amino acid decarboxylase	AAAD	aaad	406651	NM_213342	ZDB-GENE-040426-2656
Dopamine-β-hydroxylase	DBH	dbh	30505	NM_001109694	ZDB-GENE-990621-3
Phenylethanolamine-N-methyltransferase	PNMT	pnmt	100332609	XM_002666341	-
Vesicular monoamine transporter 2 (VMAT2)	SLC18A2	slc18a2	553304	NM_001256225	ZDB-GENE-080514-1
Dopamine transporter (DAT)	SLC6A3	slc6a3	80787	NM_131755	ZDB-GENE-010316-1
Norepinephrine transporter (NET)	SLC6A2	slc6a2	565776	XM_689046	ZDB-GENE-110408-4
Catechol-O-methyltransferase	COMT	comta	561372	NM_001030157	ZDB-GENE-050913-117
		comtb	565370	NM_001083843	ZDB-GENE-040724-164
Dopamine Receptors	DRD1	drd1a	792634	XM_017359120	ZDB-GENE-130522-1
		drd1b	568126	NM_001135976	ZDB-GENE-070524-2
	DRD2	drd2a	282557	NM_183068	ZDB-GENE-021119-2
		drd2b	378719	NM_197936	ZDB-GENE-030910-2
		drd2l	378718	NM_197935	ZDB-GENE-030910-1
	DRD3	drd3	282554	NM_183067	ZDB-GENE-021119-1
	DRD4	drd4a	503564	NM_001012616	ZDB-GENE-070112-996
		drd4b	503565	NM_001012618	ZDB-GENE-070508-3
	DRD5	drd5a	100536970	XM_003199767	ZDB-GENE-130522-2
		drd5b	-	-	ZDB-GENE-130522-3
Adrenergic Receptors	ADRA1A	adra1aa	798498	NM_001324454	ZDB-GENE-030131-2831
		adra1ab	557259	XM_680297	ZDB-GENE-060503-384
	ADRA1B	adra1ba	100149100	XM_001921978	ZDB-GENE-120510-1
		adra1bb	492486	NM_001007358	ZDB-GENE-041114-51
	ADRA1D	adra1d	568614	XM_691951	ZDB-GENE-090312-203
	ADRA2	adra2a	266750	NM_207637	ZDB-GENE-021010-1
	ADRA2B	adra2b	266751	NM_207638	ZDB-GENE-021010-2
	ADRA2C	adra2c	266752	NM_207639	ZDB-GENE-021010-3
		adra2da	266754	NM_194364	ZDB-GENE-021010-4
		adra2db	266755	NM_194365	ZDB-GENE-021010-5
	ADRB1	adrb1	557194	NM_001128689	ZDB-GENE-081022-145
	ADRB2	adrb2a	565838	NM_001102652	ZDB-GENE-100414-3
		adrb2b	100037315	NM_001089471	ZDB-GENE-070410-32
	ADRB3	adrb3a	558248	NM_001128335	ZDB-GENE-080917-21
		adrb3b	792519	NM_001135134	ZDB-GENE-081022-154

In order to help compare neuroanatomy between species, dopaminergic populations have been labeled numerically based on rostral to caudal location in the brain. As reviewed by Schweitzer et al. [123], Rink and Wullimann [124] labeled the dopaminergic populations 1–8 in larvae and 0–8 in adults, with 0 representing the ventral thalamic area. Sallinen [119] used a 17 population classification scheme. Both classification systems localize dopaminergic neurons to the olfactory bulb, subpallium, posterior tuberculum, hypothalamus, and pretectum [123]. Zebrafish brain lack a substantia nigra and ventral tegmental area, however, the posterior tuberculum has populations of dopaminergic cells with projections that extend to the subpallium and spinal cord [125,126]. Figure 1 outlines the locations of the modulatory neurotransmitters in humans and zebrafish.

Figure 1.

Distribution of Modulatory Neurotransmitters in the Zebrafish and Human Brain. (A) Distribution of DA in the zebrafish (left) and human (right) brains (red); (B) Distribution of NE in zebrafish (left) and human (right) brains (blue); (C) Distribution of 5-HT in zebrafish (left) and human (right) brains (green); (D) Distribution of ACh in zebrafish (left) and human (right) brains (yellow); (E) Distribution of histamine in zebrafish (left) and human (right) brains (purple). Brains are not to scale with some simplification of systems that are represented. DA, dopamine; NE, norepinephrine; 5-HT, serotonin; ACh, acetylcholine. Neurotransmitter distributions synthesized from [16,127,128,129,130,131,132,133].

Neurons producing dopamine or norepinephrine also produce either glutamate or GABA and therefore have two transmitter profiles. Dopaminergic neurons in the dopaminergic posterior tubercular groups 2, 4, and 6 and hypothalamic group 5 and some norepinephrine producing cells in the area postrema produce glutamate and all other dopamine or norepinephrine producing neurons produce GABA [134].

DBH, the enzyme that converts dopamine to epinephrine, is also present and is used as a marker of adrenergic neurons. Dbh is only found in zebrafish hindbrain, specifically at the locus coeruleus [135,136]. The locus coeruleus projects to the pallium, the subpallium and the thalamus [137,138].

3.4. Serotonin

The neurotransmitter serotonin (5-hydroxytrptamine; 5-HT) is a biologic amine. 5-HT has an indole nucleus with a hydroxyl group and an amine group. l-tryptophan is the base of the molecule, with dietary protein being the major source. 5-HT is a modulatory neurotransmitter and has been associated with brain development, appetite, motor function, arousal and mood, neuroendocrine function, circadian rhythms, and depression [139,140,141,142].

The first enzyme in the 5-HT synthesis pathway is tryptophan hydroxylase (l-tryptophan-5-monooxygenase; TPH), which converts tryptophan to 5-hydroxytryptophan (5-HTP). The conversion of tryptophan to 5-HTP is considered the rate limiting step in the synthesis pathway and is unique to serotonergic neurons. In mammals there are two genes that code for TPH. TPH1 is expressed in the periphery and TPH2 is expressed exclusively in the brain and can be used as a marker for serotonergic neurons [143]. Once formed, 5-HTP is quickly converted to 5-HT by AAAD.

5-HT is transported into synaptic vesicles by vesicular transporter SLC18A2 (VMAT2) and released from the vesicle via exocytosis [144]. The serotonin transporter SLCl6A4 (also known as SERT) is responsible for the uptake/reuptake of 5-HT, although glia and non-serotonergic neurons can take up serotonin through organic cation transporter (OCT), plasma membrane monoamine transporter (PMAT), or through SLC6A2 or SLC6A3 (NET and DAT, respectively) [145].

5-HT is metabolized by MAO to 5-hydroxy-indolecetaldehyde which is rapidly metabolized by an aldehyde dehydrogenase to form 5-hydroxyindoleacetic acid (5-HIAA), the major metabolite of 5-HT [145].

In mammals there are three families of 5-HT receptors (HTR) that act through G-proteins, the 5-HT₁ family, the 5-HT₂ family, and a family that includes the 5-HT₄, 5-HT₆, and 5-HT₇ receptors [142]. 5-HT₃ is a cation specific ligand-gated ion channel and is considered its own family [145]. The 5-HTR₁ family generally acts to inhibit adenylyl cyclase through the G_i/o family of G proteins while the 5-HTR₂ family acts through G_q/11 family G proteins by stimulating phospholipase C. The 5-HTR₄, 5-HTR₆, and 5-HTR₇ family mainly act through the G_s family G proteins to stimulate adenylyl cyclase [146].

As a result of the teleost gene duplication event, zebrafish have four paralogous genes encoding TPH, although the nomenclature has not been standardized. Bellipanni et al. first identified two paralogs of TPH in the developing zebrafish brain, tphD1, expressed in the preoptic nuclei and the posterior tubercular in the diencephalon, and tphD2, expressed in the pineal gland and transiently in the preoptic nuclei [147]. Teraoka et al. identified a third paralog of Tph, tphR, expressed in the raphe nuclei and pineal gland [148]. In later reviews of the serotonin neurotransmitter system, these genes are referred to as tph1a, tph1b, and tph2, respectively [149,150,151]. Further research found that zebrafish th2 encodes for a fourth tph gene in the ventral diencephalon and caudal hypothalamus [116]. This gene has also been called tph3 to better reflect its function [150]. As mentioned previously, zebrafish have only one ortholog of AAAD and MAO [117]. There are two paralogs of the serotonin transporter gene SLC6A4, slc6a4a and slc6a4b [152]. In mammals, over 15 HTR genes have been identified. Table 4 outlines the critical genes in serotonin synthesis and metabolism as well as listing known paralogous genes for the serotonin HTR receptor families [121].

Table 4.

Zebrafish genes involved in serotonin neurotransmission.

Common Name	Human	Zebrafish	Gene ID	RefSeq	ZFIN ID
Tryptophan hydroxylase	TPH1	tph1a	352943	NM_178306	ZDB-GENE-030317-1
		tph1b	415103	NM_001001843	ZDB-GENE-030805-6
	TPH2	tph2	407712	NM_001310068	ZDB-GENE-040624-4
		tph3/th2	414844	NM_001001829	ZDB-GENE-050201-1
Aromatic amino acid decarboxylase	AAAD	aaad	406651	NM_212827	ZDB-GENE-040426-2656
Monoamine oxidase	MAO-A, MAO-B	mao	404730	NM_001039972	ZDB-GENE-040329-3
Serotonin Transporter (SERT)	SLC6A4	slc6a4a	664719	NM_001177459	ZDB-GENE-060314-1
		slc6a4b	664770	NM_001123321	ZDB-GENE-060314-2
Serotonin Receptors	HTR1A	htr1aa	100001828	NM_001145766	ZDB-GENE-071203-1
		htr1ab	797538	NM_001128709	ZDB-GENE-090409-2
	HTR1B	htr1b	561647	NM_001145686	ZDB-GENE-081022-141
		htr1d	556429	NM_001145686	ZDB-GENE-090409-3
		htr1fa	100005344	XM_017357893	ZDB-GENE-081105-125
	HTR2	htr2a	560808	NM_001044743	ZDB-GENE-070912-500
		htr2b	751784	NM_001044743	ZDB-GENE-081022-57
	HTR2CL1	htr2cl1	100000981	XM_001339004	ZDB-GENE-081104-48
	HTR2CL2	htr2cl2	798599	XM_001339004	ZDB-GENE-120215-109
	HTR3	htr3a	571641	XM_009295409	ZDB-GENE-071012-5
		htr3b	571632	NM_001126410	ZDB-GENE-071012-4
	HTR5	htr5a	100038775	NM_001007121	ZDB-GENE-060531-129
	HTR5-like	htr5al	368475	XM_009297078	ZDB-GENE-030616-574
	HTR6	htr6	568269	XM_685507	ZDB-GENE-030131-7839
	HTR7	htr7	562111	NM_178306	ZDB-GENE-130530-666

As reviewed by Lillesaar [149], in larval zebrafish 5-HT positive cells are located in the pineal gland, the pretectum, the posterior tuberculum, the hypothalamus, and the superior and inferior raphe. Panula et al. outlined a labeling scheme for the adult zebrafish with serotoninergic nuclei identified in the pretectal complex, the anterior, intermediate, and posterior paraventricular organ nuclei, the dorsal, median, and ventrolateral raphe, the inferior raphe, and the caudal raphe [16,150]. Adult zebrafish also have scattered serotonergic neurons within the medulla oblongata [137]. The distribution of 5-HT in the zebrafish brain compared to humans is shown in Figure 1C.

When identifying serotonergic populations, the Ets-domain transcription factor pet1 (pheochromocytoma 12 ETS [E26 transformation-specific]) is a specific developmental marker of the raphe serotonergic nuclei [151]. TPH is typically used as the serotonergic specific marker in imaging studies [149].

3.5. Acetylcholine

Acetylcholine (ACh) is the major neurotransmitter in the parasympathetic nervous system and is the neurotransmitter at neuromuscular junctions [153]. Additionally, ACh neurotransmission is widespread in the CNS and can help modulate the release of other neurotransmitters such as GABA, and has been implicated in arousal, reward, and learning and memory [153,154,155].

ACh is formed from acetyl-CoA and choline via choline acetyltransferase (ChAT). Two SLC family transport systems, a high affinity (SLC5A7; HAChU) and a low affinity (SLC44 family; LAChU), concentrate choline in terminals to provide a reserve for ACh synthesis. SLC44 is present ubiquitously throughout the body, but SLC5A7 is only found in cholinergic nerve termini [156]. The rate of SLC5A7 transport is regulated by the rate of ACh release and SLC5A7 is the rate limiting step in ACh production. Once ACh has been synthesized by ChAT it is packaged into vesicles by vesicular ACh transporter (VAChT) which is coded by SLC18A3 [106]. ACh is then released in quanta into the synaptic cleft in a calcium dependent manner. Unlike other neurotransmitters which have transporter mediated uptake/reuptake to clear the synapse, ACh is metabolized by acetylcholinesterase (AChE) within the synaptic space and broken into acetate and choline [156].

There are two major types of cholinergic receptors, nicotinic (nAChR) and muscarinic receptors (mAChR). The receptors were respectively named after nicotine and muscarine, their drug agonists. nAChRs are a member of the cys-loop family of ligand-gated ion channel receptors and are formed by combinations of receptor subunits [156,157]. In mammals, there are 17 nicotinic receptor subunits including muscle and neural specific subunits. nAChRs are located throughout the brain, though many subtypes of nAChR are located on presynaptic termini or cell bodies and function to modulate neurotransmitter release [154]. mAChRs are G-protein-coupled receptors and are located throughout the CNS and PNS. There are five subtypes of mAChR receptors in mammals, M1–M5. M1, M3, and M5 couple to G_q/11 family proteins to increase phospholipase C. M2 and M4 receptors act to decrease adenylyl cyclase through G_i/G_o receptor activation. mAChR are expressed throughout the brain, but are not uniformly distributed (reviewed by Brown [158]).

The important genes in the cholinergic system are outlined in Table 5. Zebrafish have two paralogs of the HAChU SLC5A7 (slc5a7a and slc5a7b), although slc5a7b has not been well described. The gene that produces ChAT has two paralogs in zebrafish, chata and chatb. slc18a3a and slc18a3b are two paralogs of SLC18A3 (VAChT). There is only one paralog of ACHE (ache). Currently, there are 12 putative genes encoding nAChR subunits in zebrafish and 10 putative paralogs of mAChR [159,160,161].

Table 5.

Zebrafish genes involved in cholinergic neurotransmission.

Common Name	Human	Zebrafish	Gene ID	RefSeq	ZFIN ID
High-affinity choline transporter	SLC5A7	slc5a7a	100005589	XM_005159931	ZDB-GENE-090313-273
		slc5a7b	-	-	ZDB-GENE-140429-1
Choline acetyltransferase	CHAT	chata	100170938	NM_001130719	ZDB-GENE-080102-2
		chatb	103171573	NM_001291882	ZDB-GENE-140429-2
Vesicular ACh transporter (VAChT)	SLC18A3	slc18a3a	559347	NM_001077550	ZDB-GENE-060929-990
		slc18a3b	394082	NM_201107	ZDB-GENE-040426-1410
Acetylcholinesterase	ACHE	ache	114549	NM_131846	ZDB-GENE-010906-1
Nicotinic Cholinergic Receptors	CHRNA1	chrna1	30725	NM_131445	ZDB-GENE-980526-137
	CHRNA2	chrna2a	678575	NM_001040327	ZDB-GENE-040108-2
		chrna2b	568849	XM_692206	ZDB-GENE-041001-99
	CHRNA3	chrna3	568467	XM_001921279	ZDB-GENE-070822-1
	CHRNA4	chrna4a	-	-	ZDB-GENE-130530-903
		chrna4b	556619	NM_001048063	ZDB-GENE-090505-3
	CHRNA5	chrna5	550584	NM_001017885	ZDB-GENE-050417-440
	CHRNA6	chrna6	555747	NM_001042684	ZDB-GENE-090312-91
	CHRNA7	chrna7	394199	NM_201219	ZDB-GENE-040108-3
	CHRNA9	chrna9	568807	XM_001920859	ZDB-GENE-090312-63
	CHRNA10	chrna10a	556507	NM_001044804	ZDB-GENE-060503-725
		chrna10b	-	-	ZDB-GENE-130530-624
Muscarinic Cholinergic Receptors	CHRM1	chrm1a	792708	XM_001332257	ZDB-GENE-090410-9
		chrm1b	794658	NM_178301	ZDB-GENE-070705-188
	CHRM2	chrm2a	352938	NM_178301	ZDB-GENE-030314-1
		chrm2b	555516	XM_678041	ZDB-GENE-090410-3
	CHRM3	chrm3a	571679	XM_695289	ZDB-GENE-090410-4
		chrm3b	100149598	XM_001919125	ZDB-GENE-090410-5
	CHRM4	chrm4a	100150701	XM_001922407	ZDB-GENE-090410-6
		chrm4b	-	-	ZDB-GENE-090410-7
	CHRM5	chrm5a	553978	NM_001020803	ZDB-GENE-080723-32
		chrm5b	561491	NM_001030160	ZDB-GENE-041001-169

Cholinergic neurons have been identified through immunohistochemical staining against choline-acetyltransferase (ChAT) [94,162]. In zebrafish, cholinergic neurons are found in both the brain and spinal cord, specifically in the octavolateralis cells and modulatory or sensory neurons, the ventral telencephalic area, the central, dorsal, and subcommissural nuclei of the ventral telencephalic areas, the preoptic area, dorsal thalamus, pretectal nuclei, hypothalamus, optic tectum, and tegmentum [137,163,164,165]. The distribution of ACh in zebrafish and human brains is shown in Figure 1D.

3.6. Histamine

Histamine is a signaling molecule present in many tissues, serving functions in the stomach, skin, and immune systems. Histamine also has a role in neurotransmission [166]. Within the CNS, histamine is associated with wakefulness, feeding and drinking, and learning and memory [130,167,168].

The structure of histamine, 2-(4-imidazolyl)ethylamine, is similar to 5-HT, NE, and EP, but histamine has an imidazole nucleus and therefore has tautomeric properties that may be associated with receptor affinity. In mammals, mast cells of bone marrow origin reside in perivascular spaces, choroid plexus, and meninges and can produce significant amounts of histamine within the brain although the only neurons that produce histamine are located within hypothalamic tuberomamilary neurons within the posterior hypothalamus [169]. Zebrafish, on the other hand, do not have stores of histamine outside of the brain, suggesting any histamine is of importance to neurotransmission [130,170]. The periventricular cells of the caudal hypothalamus are the only cell group that contains histaminergic neurons in zebrafish brain, similar to mammals, although the axons project throughout the CNS [137,170]. These histamine producing neurons also contain other signaling molecules including GABA, neuropeptides, and thyrotropin-releasing hormone [171].

Histamine is synthesized by l-histidine decarboxylase (HDC). The rate of biosynthesis is controlled by the availability of l-histidine and the rate limiting enzyme, HDC. Once formed, histamine is transported into vesicles by SLC18A2 (VMAT2) [172]. Most histamine in the brain is released via non-synaptic mechanisms and often acts on both presynaptic and postsynaptic receptors. There is no evidence of a neuronal histamine transporter [169].

The metabolism of histamine can occur either by diamine oxidase (DAO; amine oxidase AOC1), which oxidizes histamine to imidazole acetic acid (IAA), or by histamine N-methyltransferase (HNMT), which methylates histamine and forms tele-methylhistamine (t-MH) and is then further metabolized by MAO (MAO-B in mammals) to tele-methylimidazole acetic acid (t-MIAA). The methylation metabolism pathway is more common in vertebrate brains and HMT is widely distributed throughout the brain [168,169].

Mammals have four histamine receptors that are found in the brain, H1, H2, H3, and H4. H1 and H2 are considered excitatory while H3 is inhibitory and often acts as an autoreceptor. H4 is the most recently discovered but does appear to localize to the brain [173]. Histamine receptors are linked to G proteins in both neurons and glia. H1 receptors are linked to G_q and stimulate phospholipase C. H2 receptors may couple with G_q or G_s but act through the stimulation of adenylyl cyclase. H3 receptors are linked to G_i/o and inhibit adenylyl cyclase. H3 receptors may also activate MAPK, Akt/GSK-3β, and phospholipase A₂ pathways [174,175,176]. The H4 receptor is similar to the H3 receptor and acts through G_i/o proteins to inhibit adenylyl cyclase [173].

In zebrafish there is one ortholog each of HDC (l-histidine decarboxylase), AOC1 (diamine oxidase), and HNMT (histamine N-methyltransferase) (Table 6). To date, there are four known genes in zebrafish that code for histamine receptors, hrh1, hrh2a, hrh2b, and hrh3 [177]. In zebrafish, histamine containing neurons have been localized only to the ventrocaudal hypothalamus, though the projections are widespread [137,178]. The distribution of histamine in the zebrafish brain compared to humans is shown in Figure 1E.

Table 6.

Zebrafish genes involved in histamine neurotransmission.

Common Name	Human	Zebrafish	Gene ID	RefSeq	ZFIN ID
l-Histidine decarboxylase	HDC	hdc	793609	NM_001102593	ZDB-GENE-080102-5
Amine oxidase	AOC1	aoc1	555401	NM_001077598	ZDB-GENE-061103-112
Histamine N-methyltransferase	HNMT	hnmt	445242	NM_001003636	ZDB-GENE-040801-157
Histamine Receptors	HRH1	hrh1	735302	NM_001042731	ZDB-GENE-070531-3
	HRH2	hrh2a	735303	NM_001045338	ZDB-GENE-070531-4
		hrh2b	100005590	NM_001109738	ZDB-GENE-070928-20
	HRH3	hrh3	561773	NM_001025518	ZDB-GENE-040724-204

3.7. Glycine

Glycine is an amino acid that serves as a signaling molecule and neurotransmitter in the brainstem and spinal cord. Glycine is the simplest amino acid, with only a hydrogen for its side chain. Glycine, typically considered an inhibitory neurotransmitter, is involved with interneuron differentiation in neurodevelopment, mediation of spinal reflexes, and reflex behaviors such as breathing [179,180].

Glycine can be formed through the conversion of serine to glycine with either glycine dehydrogenase (GLDC), also known as glycine decarboxylase (GDC) or glycine-cleavage system, or serine hydroxylmethyltransferase (SHMT). Glycine is transported into synaptic vesicles via the vesicular inhibitory amino acid transporter, SLC32A1 (VIAAT, also known as vesicular GABA transporter (VGAT)) [180].

Glycine is transported out of the synaptic cleft by glycine transporters. Two glycine transporters, SLC6A9 (GLYT1) and SLC6A5 (GLYT2), have been identified in mammals [180]. SLC6A9 and SLC6A5 transporters are expressed on both astrocytes and postsynaptic neurons [181].

The glycine receptors are in the ligand gated ion channel superfamily. In mammals, glycine receptor subunits arise from two separate gene families. The α gene family has four subunit genes (α₁–α₄) and the β gene group has only one member (reviewed by Bowery and Smart [182]). Glycine also acts on NMDA receptors and modulates the amplitude and time course of the glutamate-elicited response [183]. Interestingly, although no metabotropic counterparts have been identified, the glycine receptor subunit α can interact with G protein βγ subunits, which potentiates the response to glycine [184].

As outlined in Table 7, zebrafish tend to have a single known ortholog for most of the genes important for glycine metabolism [185,186]. The exception is the presence of two paralogs for glycine receptor α subunit 4 gene and the glycine receptor β gene. Glycinergic neurons are identified via positive immunoreactivity for glycine transporter (slc6A9) immunohistochemistry. In the developing zebrafish, glycine producing cells are limited to the hindbrain and spinal cord, and appear as early as 20 h post fertilization (hpf) [187,188]. In adult zebrafish, the vast majority of glycinergic neurons are within the medulla oblongata, though a few positive neurons are within a ventral tegmental equivalent nucleus [129,187].

Table 7.

Zebrafish genes involved in glycine neurotransmission.

Common Name	Human	Zebrafish	Gene ID	RefSeq	ZFIN ID
Glycine dehydrogenase	GLDC	gldc	321621	NM_199554	ZDB-GENE-030131-340
Serine hydroxymethyltransferase 1	SHMT1	shmt1	394021	NM_201046	ZDB-GENE-040426-1558
Serine hydroxymethyltransferase 2	SMHT2	shmt2	100144628	NM_001123374	ZDB-GENE-071213-1
Inhibitory amino acid transporter	SLC32A1	slc32a1	798575	NM_001080701	ZDB-GENE-061201-1
Glycine transporter 1	SLC6A9	slc6a9	494490	NM_001030073	ZDB-GENE-050105-3
Glycine transporter 2	SLC6A5	slc6a5	494450	NM_001009557	ZDB-GENE-050105-2
Glycine receptor α	GLRA1	glra1	30676	NM_131402	ZDB-GENE-991117-1
	GLRA2	glra2	793646	NM_001167899	ZDB-GENE-090407-1
	GLRA3	glra3	192124	NM_152965	ZDB-GENE-020402-1
	GLRA4	glra4a	83413	NM_131782	ZDB-GENE-010410-3
		glra4b	192125	NM_001202511	ZDB-GENE-020402-2
Glycine receptor β	GLRB	glrba	83412	NM_131781	ZDB-GENE-010410-2
		glrbb	445193	NM_001003587	ZDB-GENE-040801-106

3.8. Other Neurotransmitters

Other substances can also act as neurotransmitters in the brain, including purines, peptides, nitric oxide, and endocannabinoids [189,190]. Please see Rico et al. [11] for a review of the purine nucleotides and nucleosides in zebrafish and Panula et al. [16] for a review of neuropeptides.

4. Evaluation of Neurotoxicity

The neurotransmitter systems can serve as targets of chemical toxicity. The individual enzymes, transporters, and receptors may be altered by chemical toxicants through changes in gene expression or changes in activity of the enzyme or receptor. Multiple methods can be used to evaluate neurotransmitter systems in zebrafish, from the measuring of neurotransmitter levels in the brain, to evaluation of gene expression, to the functional testing of behavioral assays. These methods are reviewed below.

4.1. Evaluation of Neurotransmitters

In the evaluation of chemical toxicants, measuring neurotransmitter levels can provide information on the functional alterations in the brain resulting from chemical treatment. The quantity of neurotransmitters can be measured in the zebrafish brain. Sallinen et al. [119] and Chattererjee et al. [191] have both described methods for measuring neurotransmitter levels via high performance liquid chromatography (HPLC) that have been modified and used in other laboratories [192,193].

Experimental neurotransmitter results may be comparable within one laboratory, but not comparable across multiple laboratories due to differences in experimental methods and equipment used. Furthermore, one difficulty in comparing neurotransmitter levels across studies and laboratories is the lack of reference intervals and the tendency to normalize neurotransmitter values to controls rather than reporting absolute values, which limits comparison. For example, Pan et al. [194] reported the difference in neurotransmitter levels between the AB and short-fin wildtype strains of zebrafish as a ratio between zebrafish strains, rather than average concentration. Table 8 lists reported neurotransmitter levels from control zebrafish. Comparison of values in the table is difficult between studies in part to different methodologies used for normalization. Neurotransmitter levels can be normalized to protein content or number of fish pooled for the sample, and it is difficult to equate between the two methods.

Table 8.

Reported neurotransmitter levels in control zebrafish brain.

Reference (Age, Sex, and Strain if Known)	Glutamate	GABA	DA	NE	5-HT	ACh
Adult Zebrafish
Panula et al. [16] (Sex, age, and strain unknown)	-	-	2.09 ± 0.42 nmol/g	4.53 ± 0.97 nmol/g	-	-
López Patiño et al. [197] (Male and female 9 ± 1 mpf AB wildtype)	-	-	1.5–2 pg/ug protein	-	-	-
Chatterjee and Gerlai [191] (Male and female 90 dpf AB wildtype)	-	-	4.18 ± 0.28 ng/mg protein	-	-	-
Embryonic/Larval Zebrafish
Wirbisky et al. [193] (Embryos raised at 28.5 °C)	-	-	78.31 ± 2.26 ng/fish (48 hpf) 99.17 ± 6.54 ng/fish (72 hpf)	-	-	-
Tufi et al. [195] (Embryos raised at 26 °C)	9.1 ± 0.5 ng/embryo (48 hpf) 12 ± 0.3 ng/embryo (72 hpf)	1.8 ± 0.03 ng/embryo (48 hpf) 2.2 ± 0.1 ng/embryo (72 hpf)	-	-	7.2 ± 0.01 pg/embryo (48 hpf) 7.1 ± 0.1 pg/embryo (72 hpf)	3.0 ± 0.1 pg/embyro (48 hpf) 4.0 ± 0.1 pg/embyro (72 hpf)

Other methods for the measurement of neurotransmitters include an analytical method described by Tufi et al. [195] of hydrophilic interaction liquid chromatography (HILIC) coupled to tandem mass spectrometry (MS/MS) that has been used to measure neurotransmitter levels in zebrafish larvae. The levels of neurotransmitters and major metabolites were measured in 0–6 dpf zebrafish larvae. Additionally, Jones et al. [196] describe a technique to detect neurotransmitter release and reuptake in brain tissue slices through fast scan cyclic voltammetry (FSCV).

4.2. Evaluation of Gene Expression Changes in Neurotransmitter Pathways

Chemical toxicants can affect the expression of genes, and evaluation of these changes can provide information on pathways that may be altered due to chemical exposure. Quantitative PCR (qPCR) can be used to evaluate alterations in gene expression [198]; however, the information is limited to the number of genes investigated.

Microarray studies have been used to evaluate gene expression after chemical exposure in zebrafish [199,200,201,202]. The value of transcriptomic evaluations in zebrafish toxicology studies is well recognized, especially for environmental toxicology [12,203]. Next generation technologies such as RNA-seq are providing precise and powerful options for evaluating the transcriptome [203,204]. Please see the review by Wang et al. [204] and Aanes et al. [205] for information on RNA-seq and its application in zebrafish.

4.3. Evaluation of Neurobehavior

The significance of apparent alterations in gene expression and changes in neurotransmitter levels is uncertain without having differences in phenotype. Zebrafish are an accepted model of neurobehavior [206,207,208,209,210,211,212,213,214,215] and have been used to study stress, anxiety-like behavior, and depression, with decreased movement typically associated with anxiety [216,217,218]. Zebrafish are increasingly being used in neurobehavioral research to evaluate learning and neuropsychiatric disorders (reviewed by [207,208,212,219]). Neurobehavioral tests have been developed for both larval and adult zebrafish to assess anxiety-like behavior. Changes in neurobehavior can substantiate changes observed through neurotransmitter analysis or through transcriptomic evaluation; however, changes in neurobehavior cannot be localized to a specific neurotransmitter, pathway, or protein. Please refer to Kalueff et al. [219] and Parker et al. [220] for recent reviews of neurobehavior in zebrafish toxicology research.

4.4. Visualization of Neurotransmitters and Neurotransmitter Systems

The visualization of neurotransmitters has been important for evaluating the location, relative quantity, and pathologic alterations of neurotransmitters and neurotransmitter pathway components. A multitude of techniques, including immunohistochemistry, in situ hybridization, immunofluorescence, calcium indicators, selective fluorescent reporters [221,222,223,224,225,226] (and reviewed by [227]) have been used to study neuroanatomy and neurotransmitter systems in zebrafish. The imaging of neurotransmitters, transporters, and receptors in zebrafish brains has classically been used in the study of developmental biology [68] and recently for neural systems mapping [226,228]. A recent review by Arrenberg and Driever [228] highlights the use of optogenetics and calcium indicator activity probes in the development of functional maps of the zebrafish brain. Currently this methodology has been underused in studies of chemical toxicity, but could provide powerful information when combined with the other approaches mentioned.

4.5. Pharmacology Screens

The advantages of the zebrafish model system allow for high throughput screening of pharmacologic agents which can help identify neuropathways, mechanisms of toxicity, possible therapeutic drugs, and help classify zebrafish behavior (reviewed by [229,230,231,232,233,234]). The neuropharmacology of the monoamine neurotransmitters was reviewed by Maximino and Herculano [235]. Kalueff et al. [219] have also recently written a highly recommended review that evaluates the zebrafish system in neurobehavior and pharmacology screenings.

5. Specific Examples of Chemical Toxicity Targeting Neurotransmitter Systems

Zebrafish have been used as a model organism to study the effect of multiple classes of chemicals on neurodevelopment and neural function. Classes of chemicals examined include drugs, especially ethanol, pesticides, and metals. The significant methods and findings from the literature are summarized below and in Table 8.

5.1. Drugs

The effects of alcohol have been extensively studied in zebrafish. Rico et al. [236] found that adult zebrafish exposed to ethanol had increased AChE activity in a 1% ethanol treatment group although the mRNA levels of AChE were decreased, suggesting post-transcriptional or post-translational modifications to AChE. Chatterjee and Gerlai [191] found that adult zebrafish exposed to ethanol for 1 h had an increase in brain dopamine levels at all treatment levels, while 5-HT and 5-HIAA increased at the highest (1%) ethanol group. Chatterjee and Shams [237] found a similar increase in dopamine and 5-HT after acute ethanol exposure in AB strain zebrafish, but not in SF strain zebrafish. Puttonen et al. [238], found that larval Turku strain zebrafish with acute exposure to ethanol had increased locomotor activity at lower treatment levels, decreased locomotor activity at the highest treatment level (3%), upregulation of hdc (histidine decarboxylase), th1, and th2 at higher treatment levels, no alterations in the dopaminergic and histaminergic systems according to in situ hybridization and immunohistochemistry, and a decrease in dopamine levels, as measured by HPLC. These results suggest that ethanol has the ability to alter the cholinergic, dopaminergic, and histaminergic neurotransmitter systems and that neurobehavior can be a sensitive measure of altered neurotransmitter systems.

The effects of alcohol on zebrafish behavior appear to have an inverted U shaped dose-response, with increased locomotor activity and shoaling behavior at lower doses and decreased locomotor activity and shoaling behavior at higher doses, as well as either increased or decreased measures of anxiety [237,239,240,241,242]. Although this finding appears to be dependent on the specific zebrafish strain (AB, SF, WIK, or Turku strain) used and therefore, needs further analysis [237,238,239,243]. Bailey et al. found juvenile AB strain zebrafish with developmental exposure to ethanol had increased locomotor activity overall and after stress or anxiety inducing stimuli [244]. A latent learning neurobehavioral assay performed by Luchiari et al. suggested that AB strain zebrafish have impaired memory recall after ethanol exposure [245]. Echevarria et al. have reviewed additional behavioral outcomes of ethanol exposure in zebrafish [246].

Zenki et al. [247] found that alcohol and its metabolite acetaldehyde decreased the activity of glutamate transporters, based on measuring the in vitro rate of glutamate uptake in tissue sections, in adult zebrafish and that acetaldehyde was more toxic than ethanol when measuring cell viability via 3(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) reduction and extracellular lactate dehydrogenase (LDH) activity.

Nicotine is often used to study nicotinic cholinergic receptors, but nicotine also is a drug known for anxiolytic effects. Levin et al. [248] and Bencan and Levin [249], found that adult zebrafish exposed to nicotine had reduced time spent in the bottom of a novel tank (novel tank test) and found that the anxiolytic effect was mediated through the Chrna7 and Chrna4b receptor subunits [248,249]. Levin and Chen (2004), also found that adult zebrafish exposed to low dose nicotine had improved memory based on a 3-chambered tank test for learning assessment while zebrafish exposed to higher concentrations of nicotine had impaired memory function [250].

5.2. Pesticides

Pesticides represent a broad group of chemicals that include herbicides, insecticides, fungicides, and rodenticides. Some pesticides are important environmental toxicants while others are more acutely toxic to humans (for example, during application or manufacturing).

The effects of organophosphate pesticides on brain acetylcholinesterase are well known, however, exposure to organophosphates can also affect other brain neurotransmitter systems. Eddins et al. [251] studied the effects of developmental exposure of zebrafish to chlorpyrifos. Adult zebrafish previously exposed to chlorpyrifos had greater startle responses in a startle response and habituation behavioral assay that persisted into the habituation period. Additionally, decreased dopamine and serotonin levels and increased transmitter turnover were measured in larval zebrafish while only the decreased dopamine persisted to adulthood [251].

Atrazine is a commonly used herbicide in the Midwestern United States that often contaminates drinking water supplies. Wirbisky et al. [199] found decreased levels of the serotonin metabolite 5-HIAA and decreased serotonin turnover (5-HIAA/5-HT) in the brain of adult female zebrafish aged 9 months that were exposed to atrazine only during embryogenesis. Transcriptomic analysis via microarray identified multiple molecular pathways related to brain development, function, and behavior that were altered in the treatment groups including several targets associated with the serotoninergic system [199].

Semicarbazide is a contaminant formed from the breakdown of azodicarbonamide, a chemical used to treat flour. Semicarbazide derivatives have also been used as herbicides. Adult zebrafish exposed to semicarbazide for 96 h had increased expression of gad1 while adult zebrafish with 28 day exposure had down regulation of gad1, gabrr1, and gabbr2 [252]. Yu et al. [252] suggest the alterations of the GABAergic pathway genes could indirectly result in alterations in the hypothalamus-pituitary-gonadal axis.

Strychnine is commonly used as rodent bait. Roy et al. [253] found that zebrafish embryos treated with strychnine had decreased expression of glra4 at 24 and 48 hpf, gad1 at 24–96 hpf, and slc17a6a and slc17a6b (VGLUT2) at 48 hpf.

5.3. Metals

Some metals, such as lead and mercury are important environmental toxicants [254,255,256]. Developmental lead exposure is linked to a number of CNS effects, including lowered IQ and attention deficit disorders [257,258,259,260]. Wirbisky et al. [193] found that developmental exposure to lead resulted in altered expression of GABAergic pathway genes including gad2, gad1b, slc6a1 (gat1), slc32a1 (vgat), gabbr1, and gabbr1a as well as altering GABA levels during development. Furthermore, Lee and Freeman [261] found that adult zebrafish with a developmental lead exposure had altered gene expression in pathways associated with neurodevelopment and neurotransmission.

In addition, studies have also started to evaluate the impact of mercury exposure on neurotransmitter systems. The toxicity of mercury depends on its chemical form. Methylmercury is associated with Minamata disease and nervous system impairment. Cambier et al. [198] fed adult male fish food contaminated with methylmercury and found changes in gene expression in the GABA synthesis and metabolism pathways. Inorganic mercury is associated with acute toxicity and renal failure; however, Richetti et al. [262] found that adult zebrafish exposed to mercury chloride and lead acetate had decreased activity of acetylcholinesterase, but no alterations in the gene expression of AChE.

6. Conclusions

The neurotransmitter systems are highly conserved between zebrafish and mammals, making the zebrafish model a powerful tool for the study of mechanisms of chemical neurotoxicity. Although there are some differences in neurochemistry, the pathways of neurotransmitter synthesis, metabolism, and action are highly conserved across species. Although some genes have multiple paralogs in zebrafish, further research into these paralogs may help identify new functions of genes in humans. Furthermore, further research into neurotransmitter receptors may provide more information about basic neurological systems and connectivity.

The nervous system is an important target of chemical toxicants. Neurotransmitter levels, gene expression, and neurobehavior can be evaluated after chemical treatment to discover toxicant based changes in the nervous system. New technologies provide more sensitive and powerful methods; however, the integration of these methods along with other techniques, such as imaging and activity assays, will be necessary to determine the mechanisms and pathogenesis of chemical toxicant related alterations. Overall, relatively few studies have focused on alterations of neurochemical systems in zebrafish, but the completed studies support the utility and application of zebrafish in neurochemical toxicology.

Author Contributions

K.A.H. wrote the review with the assistance of J.L.F.

Conflicts of Interest

The authors declare no conflict of interest.