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. 1982;1(5):579–583. doi: 10.1002/j.1460-2075.1982.tb01211.x

The scattered distribution of actin genes in the mouse and human genomes.

P Soriano, P Szabo, G Bernardi
PMCID: PMC553090  PMID: 6329692

Abstract

A hamster actin cDNA probe was used to localize actin genes on the major components of mouse and human DNAs, namely on the four families of fragments forming the bulk of these genomes. Over 20 EcoRI fragments hybridizing the probe could be detected; a different subset of these fragments was found in each component. Since the fragment families forming the major components of the mouse and human DNAs derive from very long chromosomal segments, the isochores , the presence of actin genes on all components provides evidence for their dispersion in both genomes. In situ hybridization of 125I-labeled probe to metaphase chromosomes in the presence of dextran sulfate confirmed this dispersion by showing that the 29-30 actin gene sites so identified are distributed on almost all chromosomes. Moreover, some human actin genes could be mapped on specific chromosomal segments; in particular, one gene was localized on the long arm of the X chromosome. Finally, three different mouse actin genes were isolated from a recombinant DNA library and previously investigated interspersed repeated sequences were identified in the vicinity of these genes.

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Selected References

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  1. Allderdice P. W., Miller O. J., Miller D. A., Warburton D., Pearson P. L., Klein G., Harris H. Chromosome analysis of two related heteroploid mouse cell lines by quinacrine fluorescence. J Cell Sci. 1973 Jan;12(1):263–274. doi: 10.1242/jcs.12.1.263. [DOI] [PubMed] [Google Scholar]
  2. Benton W. D., Davis R. W. Screening lambdagt recombinant clones by hybridization to single plaques in situ. Science. 1977 Apr 8;196(4286):180–182. doi: 10.1126/science.322279. [DOI] [PubMed] [Google Scholar]
  3. Boone C., Chen T. R., Ruddle F. H. Assignment of three human genes to chromosomes (LDH-A to 11, TK to 17, and IDH to 20) and evidence for translocation between human and mouse chromosomes in somatic cell hybrids (thymidine kinase-lactate dehydrogenase A-isocitrate dehydrogenase-C-11, E-17, and F-20 chromosomes). Proc Natl Acad Sci U S A. 1972 Feb;69(2):510–514. doi: 10.1073/pnas.69.2.510. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Comings D. E. Mechanisms of chromosome banding and implications for chromosome structure. Annu Rev Genet. 1978;12:25–46. doi: 10.1146/annurev.ge.12.120178.000325. [DOI] [PubMed] [Google Scholar]
  5. Cortadas J., Olofsson B., Meunier-Rotival M., Macaya G., Bernardi G. THE DNA components of the chicken genome. Eur J Biochem. 1979 Aug 15;99(1):179–186. doi: 10.1111/j.1432-1033.1979.tb13244.x. [DOI] [PubMed] [Google Scholar]
  6. Cuny G., Soriano P., Macaya G., Bernardi G. The major components of the mouse and human genomes. 1. Preparation, basic properties and compositional heterogeneity. Eur J Biochem. 1981 Apr;115(2):227–233. doi: 10.1111/j.1432-1033.1981.tb05227.x. [DOI] [PubMed] [Google Scholar]
  7. Davies K. E., Young B. D., Elles R. G., Hill M. E., Williamson R. Cloning of a representative genomic library of the human X chromosome after sorting by flow cytometry. Nature. 1981 Oct 1;293(5831):374–376. doi: 10.1038/293374a0. [DOI] [PubMed] [Google Scholar]
  8. Dodemont H. J., Soriano P., Quax W. J., Ramaekers F., Lenstra J. A., Groenen M. A., Bernardi G., Bloemendal H. The genes coding for the cytoskeletal proteins actin and vimentin in warm-blooded vertebrates. EMBO J. 1982;1(2):167–171. doi: 10.1002/j.1460-2075.1982.tb01142.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Engel J. N., Gunning P. W., Kedes L. Isolation and characterization of human actin genes. Proc Natl Acad Sci U S A. 1981 Aug;78(8):4674–4678. doi: 10.1073/pnas.78.8.4674. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Filipski J., Thiery J. P., Bernardi G. An analysis of the bovine genome by Cs2SO4-Ag density gradient centrifugation. J Mol Biol. 1973 Oct 15;80(1):177–197. doi: 10.1016/0022-2836(73)90240-4. [DOI] [PubMed] [Google Scholar]
  11. Firtel R. A. Multigene families encoding actin and tubulin. Cell. 1981 Apr;24(1):6–7. doi: 10.1016/0092-8674(81)90494-3. [DOI] [PubMed] [Google Scholar]
  12. Fyrberg E. A., Kindle K. L., Davidson N., Kindle K. L. The actin genes of Drosophila: a dispersed multigene family. Cell. 1980 Feb;19(2):365–378. doi: 10.1016/0092-8674(80)90511-5. [DOI] [PubMed] [Google Scholar]
  13. Gerhard D. S., Kawasaki E. S., Bancroft F. C., Szabo P. Localization of a unique gene by direct hybridization in situ. Proc Natl Acad Sci U S A. 1981 Jun;78(6):3755–3759. doi: 10.1073/pnas.78.6.3755. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Humphries S. E., Whittall R., Minty A., Buckingham M., Williamson R. There are approximately 20 actin gene in the human genome. Nucleic Acids Res. 1981 Oct 10;9(19):4895–4908. doi: 10.1093/nar/9.19.4895. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Krayev A. S., Kramerov D. A., Skryabin K. G., Ryskov A. P., Bayev A. A., Georgiev G. P. The nucleotide sequence of the ubiquitous repetitive DNA sequence B1 complementary to the most abundant class of mouse fold-back RNA. Nucleic Acids Res. 1980 Mar 25;8(6):1201–1215. doi: 10.1093/nar/8.6.1201. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Lacy E., Hardison R. C., Quon D., Maniatis T. The linkage arrangement of four rabbit beta-like globin genes. Cell. 1979 Dec;18(4):1273–1283. doi: 10.1016/0092-8674(79)90238-1. [DOI] [PubMed] [Google Scholar]
  17. Macaya G., Thiery J. P., Bernardi G. An approach to the organization of eukaryotic genomes at a macromolecular level. J Mol Biol. 1976 Nov;108(1):237–254. doi: 10.1016/s0022-2836(76)80105-2. [DOI] [PubMed] [Google Scholar]
  18. Meunier-Rotival M., Soriano P., Cuny G., Strauss F., Bernardi G. Sequence organization and genomic distribution of the major family of interspersed repeats of mouse DNA. Proc Natl Acad Sci U S A. 1982 Jan;79(2):355–359. doi: 10.1073/pnas.79.2.355. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Miller O. J., Cook P. R., Meera Khan P., Shin S., Siniscalco M. Mitotic separation of two human X-linked genes in man--mouse somatic cell hybrids. Proc Natl Acad Sci U S A. 1971 Jan;68(1):116–120. doi: 10.1073/pnas.68.1.116. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Opitz J., Pallister P. D., Ruddle F. H. An (X;14) translocation, unbalanced, 47 chromosomes. Repository identification No. GM-74. Cytogenet Cell Genet. 1973;12(4):291–292. doi: 10.1159/000130465. [DOI] [PubMed] [Google Scholar]
  21. Scheller R. H., McAllister L. B., Crain W. R., Jr, Durica D. S., Posakony J. W., Thomas T. L., Britten R. J., Davidson E. H. Organization and expression of multiple actin genes in the sea urchin. Mol Cell Biol. 1981 Jul;1(7):609–628. doi: 10.1128/mcb.1.7.609. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Szabo P., Elder R., Steffensen D. M., Uhlenbeck O. C. Quantitative in situ hybridization of ribosomal RNA species to polytene chromosomes of Drosophila melanogaster. J Mol Biol. 1977 Sep 25;115(3):539–563. doi: 10.1016/0022-2836(77)90170-x. [DOI] [PubMed] [Google Scholar]
  23. Thiery J. P., Macaya G., Bernardi G. An analysis of eukaryotic genomes by density gradient centrifugation. J Mol Biol. 1976 Nov;108(1):219–235. doi: 10.1016/s0022-2836(76)80104-0. [DOI] [PubMed] [Google Scholar]
  24. Tobin S. L., Zulauf E., Sánchez F., Craig E. A., McCarthy B. J. Multiple actin-related sequences in the Drosophila melanogaster genome. Cell. 1980 Jan;19(1):121–131. doi: 10.1016/0092-8674(80)90393-1. [DOI] [PubMed] [Google Scholar]
  25. Vandekerckhove J., Weber K. At least six different actins are expressed in a higher mammal: an analysis based on the amino acid sequence of the amino-terminal tryptic peptide. J Mol Biol. 1978 Dec 25;126(4):783–802. doi: 10.1016/0022-2836(78)90020-7. [DOI] [PubMed] [Google Scholar]
  26. Wahl G. M., Stern M., Stark G. R. Efficient transfer of large DNA fragments from agarose gels to diazobenzyloxymethyl-paper and rapid hybridization by using dextran sulfate. Proc Natl Acad Sci U S A. 1979 Aug;76(8):3683–3687. doi: 10.1073/pnas.76.8.3683. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Wyman A. R., White R. A highly polymorphic locus in human DNA. Proc Natl Acad Sci U S A. 1980 Nov;77(11):6754–6758. doi: 10.1073/pnas.77.11.6754. [DOI] [PMC free article] [PubMed] [Google Scholar]

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