Skip to main content
The EMBO Journal logoLink to The EMBO Journal
. 1983;2(6):927–934. doi: 10.1002/j.1460-2075.1983.tb01523.x

Microdissection and cloning of the white locus and the 3B1-3C2 region of the Drosophila X chromosome

V Pirrotta 1,*, C Hadfield 1,1, GHJ Pretorius 1,2
PMCID: PMC555210  PMID: 16453459

Abstract

Fragments from the 3B-3C region of the Drosophila X chromosomes were microdissected from salivary gland squashes and their DNA was cloned by the method developed by Scalenghe et al. (1981). These clones were used as starting points for a chromosome walk which covers 200 kb including bands 3B2 to 3C2. A number of deletion breakpoints were mapped on the cloned DNA allowing the localisation of several genes in the 3B region. The white locus in particular was isolated by microcloning the wa insertion site. Two transcripts, of 2 and 2.4 kb, respectively, arise from the white region and its vicinity.

Keywords: Drosophila, microcloning, repetitive sequences, white locus

Full text

PDF
931

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Benton W. D., Davis R. W. Screening lambdagt recombinant clones by hybridization to single plaques in situ. Science. 1977 Apr 8;196(4286):180–182. doi: 10.1126/science.322279. [DOI] [PubMed] [Google Scholar]
  2. Bingham P. M., Judd B. H. A copy of the copia transposable element is very tightly linked to the Wa allele at the white locus of D. melanogaster. Cell. 1981 Sep;25(3):705–711. doi: 10.1016/0092-8674(81)90177-x. [DOI] [PubMed] [Google Scholar]
  3. COOPER K. W. Cytogenetic analysis of major heterochromatic elements (especially Xh and Y) in Drosophila melanogaster, and the theory of "heterochromatin". Chromosoma. 1959;10:535–588. doi: 10.1007/BF00396588. [DOI] [PubMed] [Google Scholar]
  4. Collins M., Rubin G. M. Structure of the Drosophila mutable allele, white-crimson, and its white-ivory and wild-type derivatives. Cell. 1982 Aug;30(1):71–79. doi: 10.1016/0092-8674(82)90013-7. [DOI] [PubMed] [Google Scholar]
  5. Denhardt D. T. A membrane-filter technique for the detection of complementary DNA. Biochem Biophys Res Commun. 1966 Jun 13;23(5):641–646. doi: 10.1016/0006-291x(66)90447-5. [DOI] [PubMed] [Google Scholar]
  6. Gehring W. J., Paro R. Isolation of a hybrid plasmid with homologous sequences to a transposing element of Drosophila melanogaster. Cell. 1980 Apr;19(4):897–904. doi: 10.1016/0092-8674(80)90081-1. [DOI] [PubMed] [Google Scholar]
  7. Gelbart W. M., Wu C. T. Interactions of zeste mutations with loci exhibiting transvection effects in Drosophila melanogaster. Genetics. 1982 Oct;102(2):179–189. doi: 10.1093/genetics/102.2.179. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Goldberg D. A. Isolation and partial characterization of the Drosophila alcohol dehydrogenase gene. Proc Natl Acad Sci U S A. 1980 Oct;77(10):5794–5798. doi: 10.1073/pnas.77.10.5794. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Goldberg M. L., Paro R., Gehring W. J. Molecular cloning of the white locus region of Drosophila melanogaster using a large transposable element. EMBO J. 1982;1(1):93–98. doi: 10.1002/j.1460-2075.1982.tb01130.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Hanahan D., Meselson M. Plasmid screening at high colony density. Gene. 1980 Jun;10(1):63–67. doi: 10.1016/0378-1119(80)90144-4. [DOI] [PubMed] [Google Scholar]
  11. Ish-Horowicz D., Burke J. F. Rapid and efficient cosmid cloning. Nucleic Acids Res. 1981 Jul 10;9(13):2989–2998. doi: 10.1093/nar/9.13.2989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Jack J. W., Judd B. H. Allelic pairing and gene regulation: A model for the zeste-white interaction in Drosophila melanogaster. Proc Natl Acad Sci U S A. 1979 Mar;76(3):1368–1372. doi: 10.1073/pnas.76.3.1368. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Judd B. H., Shen M. W., Kaufman T. C. The anatomy and function of a segment of the X chromosome of Drosophila melanogaster. Genetics. 1972 May;71(1):139–156. doi: 10.1093/genetics/71.1.139. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Lefevre G., Jr, Green M. M. Genetic duplication in the white-split interval of the X chromosome in Drosophila melanogaster. Chromosoma. 1972;36(4):391–412. doi: 10.1007/BF00336795. [DOI] [PubMed] [Google Scholar]
  15. Lefevre G., Jr, Wilkins M. D. Cytogenetic studies on the white locus in Drosophila melanogaster. Genetics. 1966 Jan;53(1):175–187. doi: 10.1093/genetics/53.1.175. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Levis R., Bingham P. M., Rubin G. M. Physical map of the white locus of Drosophila melanogaster. Proc Natl Acad Sci U S A. 1982 Jan;79(2):564–568. doi: 10.1073/pnas.79.2.564. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Levis R., Collins M., Rubin G. M. FB elements are the common basis for the instability of the wDZL and wC Drosophila mutations. Cell. 1982 Sep;30(2):551–565. doi: 10.1016/0092-8674(82)90252-5. [DOI] [PubMed] [Google Scholar]
  18. Rubin G. M., Kidwell M. G., Bingham P. M. The molecular basis of P-M hybrid dysgenesis: the nature of induced mutations. Cell. 1982 Jul;29(3):987–994. doi: 10.1016/0092-8674(82)90462-7. [DOI] [PubMed] [Google Scholar]
  19. Scalenghe F., Turco E., Edström J. E., Pirrotta V., Melli M. Microdissection and cloning of DNA from a specific region of Drosophila melanogaster polytene chromosomes. Chromosoma. 1981;82(2):205–216. doi: 10.1007/BF00286105. [DOI] [PubMed] [Google Scholar]
  20. Scherer G., Telford J., Baldari C., Pirrotta V. Isolation of cloned genes differentially expressed at early and late stages of Drosophila embryonic development. Dev Biol. 1981 Sep;86(2):438–447. doi: 10.1016/0012-1606(81)90202-5. [DOI] [PubMed] [Google Scholar]
  21. Smith R. F., Konopka R. J. Circadian clock phenotypes of chromosome aberrations with a breakpoint at the per locus. Mol Gen Genet. 1981;183(2):243–251. doi: 10.1007/BF00270625. [DOI] [PubMed] [Google Scholar]
  22. Sorsa V., Green M. M., Beermann W. Cytogenetic fine structure and chromosomal localization of the white gene in Drosophila melanogaster. Nat New Biol. 1973 Sep 12;245(141):34–37. doi: 10.1038/newbio245034a0. [DOI] [PubMed] [Google Scholar]
  23. Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975 Nov 5;98(3):503–517. doi: 10.1016/s0022-2836(75)80083-0. [DOI] [PubMed] [Google Scholar]
  24. Thierry-Mieg D. Paralog, a control mutant in Drosophila melanogaster. Genetics. 1982 Feb;100(2):209–237. doi: 10.1093/genetics/100.2.209. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Tschudi C., Pirrotta V., Junakovic N. Rearrangements of the 5S RNA gene cluster of Drosophila melanogaster associated with the insertion of a B104 element. EMBO J. 1982;1(8):977–985. doi: 10.1002/j.1460-2075.1982.tb01281.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Wensink P. C., Tabata S., Pachl C. The clustered and scrambled arrangement of moderately repetitive elements in Drosophila DNA. Cell. 1979 Dec;18(4):1231–1246. doi: 10.1016/0092-8674(79)90235-6. [DOI] [PubMed] [Google Scholar]
  27. Young M. W., Judd B. H. Nonessential Sequences, Genes, and the Polytene Chromosome Bands of DROSOPHILA MELANOGASTER. Genetics. 1978 Apr;88(4):723–742. doi: 10.1093/genetics/88.4.723. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Zachar Z., Bingham P. M. Regulation of white locus expression: the structure of mutant alleles at the white locus of Drosophila melanogaster. Cell. 1982 Sep;30(2):529–541. doi: 10.1016/0092-8674(82)90250-1. [DOI] [PubMed] [Google Scholar]
  29. Zhimulev I. F., Belyaeva E. S., Semeshin V. F. Informational content of polytene chromosome bands and puffs. CRC Crit Rev Biochem. 1981;11(4):303–340. doi: 10.1080/10409238109104420. [DOI] [PubMed] [Google Scholar]

Articles from The EMBO Journal are provided here courtesy of Nature Publishing Group

RESOURCES