Abstract
Cupriavidus gilardii was first identified as an aerobic, gram-negative, glucose-nonfermenting rod. C. gilardii has been characterized as an organism with low pathogenicity that causes opportunistic infections and few case reports of infection caused by this organism previously. We encountered the first case of bloodstream infection caused in China by C. gilardii in a 87-year old man without obvious immunodeficiency. The isolate were identified as C. gilardii by 16S rRNA sequencing. The infected patient was treated according to the laboratory’s antibiogram of this strain. Similar to the case report in Japan, this is the second report of an infection caused by this organism without obvious immunodeficiency, suggesting that C. gilardii exerts its pathogenicity both in immunodeficient and immunocompetent hosts.
Keywords: Cupriavidus gilardii, 16S rRNA sequencing, Antimicrobial resistance, Bloodstream infection, Immunocompetent patient, Case report
Introduction
The genus Cupriavidus are Gram-negative β-proteobacteria that have been found from environmental and human clinical sources [1]. The genus Cupriavidus currently is comprised of 11 species derived from diverse ecological niches, especially in soils contaminated with heavy metals [2]. Therefore, several bacteria including Cupriavidus metallidurans CH34 (C. metallidurans CH34) [3], Cupriavidus necator N-1 (C. necator N-1) [4], Cupriavidus pinatubonensis JMP134(C. pinatubonensis JMP134) [5], Cupriavidus taiwanensis(C. taiwanensis) [6], and Cupriavidus gilardii CR3 (C. gilardii CR3) [7] are heavy metal tolerant. Cupriavidus gilardii (C. gilardii), named after a prominent American microbiologist, G. L. Gilardii, is an aerobic, Gram-negative, peritrichously flagellated (motile), glucose-nonfermenting bacillus. The taxonomic history for this species continues to be rather complex, and consequently the species has been known by various names, including Ralstonia gilardii, Wautersia gilardii, and C. gilardii [8], [9], [10]. This species was first identified in 1999 by Coenye et al. [8]. While similar to Alcaligenes faecalis, it was found to be distinct enough to be separated into its own diagnostic entity, Ralstonia gilardii [8]. Later, in 2001, De Baere et al. [11] revealed that the Ralstonia genus could be divided into two distinct groups based on phenotype and genotype. That same year, however, the entire genus was entirely reclassified to the genus Cupriavidus due to the fact that Wautersia eutropha was genetically identical to a previously identified organism, Cupriavidus necator [10]. Consequently, Wautersia gilardii was given its current name, C. gilardii.
Case presentation
A 87-year old man who had several chronic diseases, including chronic obstructive pulmonary disease and hypertension implanted 10 years previously. He was admitted to a community hospital and hypertension with progressive decline on alertness over two years. He did not have an obvious immunodeficiency. After the patient was transferred to our hospital, blood routine examination and analyzing the infectious index were performed on hospital day (HD) 2. Laboratory evaluation at the time of admission was significant for a total white blood cell count of 3520/uL with a differential of 64.2% neutrophils, procalcitonin (PCT) and C-reactive protein (CRP) was 0.05 ng/ml and 10.76 mg/L that were within normal limits. During hospitalization period, the patient developed, chills, palpitation, short of breath and breathing difficulties through HD4. Blood parameters revealed the following values: white blood cells 10560/uL (neutrophils 73.3%), PCT 2.72 ng/ml and CRP 26.30 mg/L, the high PCT and CRP level which suggested a significant infection. Emergency blood surveillance culture was positive and identified as Cupriavidus pauculus via VITEK Compact 2 and VITEK MS. But the 16S rDNA sequence analysis of a fragment of 1344 bp obtained by a PCR method showed a homology of 100% with C.gilardii strain AU6442 from the GenBank (accession number AY860231) via NCBI BLAST (https://blast.ncbi.nlm.nih.gov/Blast.cgi). Antimicrobial susceptibility testing was performed according to the Clinical and Laboratory Standards Institute (CLSI) standards, performance standards for antimicrobial susceptibility testing, 27th informational supplement. M100-S27. The susceptibility to the antimicrobial agents were determined by disk diffusion using Mueller-Hinton agar (MHA) in ambient air, incubation 16–18 h in 35 °C ± 2 °C and measured the diameter of the zones of completed inhibition, including the diameter of the disk. The breakpoints (susceptible, intermediate, or resistant) was determined according to Pseudomonas aeruginosa M100-S27 provided by CLSI. The susceptibility of the bacterium to various antimicrobial agents is shown in Table 1. The strain was resistant to meropenem, amikacin, rifampin and ampicillin, while susceptible to cefepime, ofloxacin, piperacillin/tazobactam, levofloxacin, ciprofloxacin, aztreonam, imipenem, piperacillin, ceftazidime. From the zone diameter, C. gilardii also highly possible susceptible to cefoperazone/sulbactam,ceftriaxone,cefotaxime, ampicillin/sulbactam, trimethoprim/sulfamethoxazole. According to the antibiogram of this strain, the antimicrobial agent piperacillin/tazobactam was added, the patient’s body temperature decreased gradually and the patient improved. Meanwhile, infection correlation indexes became normal limits, white blood cells 5340/uL (neutrophils 64.2%), PCT 0.06 ng/ml and CRP 4.15 mg/L.
Table 1.
Antimicrobial agents | Specification | Result | Breakpoints (mm) | Interpretation |
---|---|---|---|---|
MEM | 10 μg | 6 mm | S: ≥19; I: 16–18; R: ≤15 | R |
AK | 30 μg | 6 mm | S: ≥17; I: 15–16; R: ≤14 | R |
CRO | 30 μg | 34 mm | – | – |
FEP | 30 μg | 42 mm | S: ≥18; I: 15–17; R: ≤14 | S |
OFX | 5 μg | 32 mm | S: ≥16; I:13–15; R: ≤12 | S |
TZP | 30 μg | 36 mm | S: ≥21; I: 15–20; R: ≤14 | S |
SCF | 150 μg | 52 mm | – | – |
RD | 5 μg | 6 mm | – | R |
AMP | 10 μg | 6 mm | – | R |
LEV | 5 μg | 33 mm | S: ≥17; I: 14–16; R: ≤13 | S |
CIP | 5 μg | 34 mm | S: ≥21; I: 16–20; R: ≤15 | S |
ATM | 30 μg | 23 mm | S: ≥22; I: 16–21; R: ≤15 | S |
CTX | 30 μg | 42 mm | – | – |
SAM | 20 μg | 43 mm | – | – |
IPM | 10 μg | 22 mm | S: ≥19; I: 16–18; R: ≤15 | S |
PRL | 100 μg | 21 mm | S: ≥21; I: 15–20; R: ≤14 | S |
CAZ | 30 ug | 26 mm | S: ≥18; I: 15–17; R: ≤14 | S |
SXT | 25 μg | 22 mm | – | – |
MEM Meropenem, AK Amikacin, CRO Ceftriaxone, FEP Cefepime, OFX Ofloxacin, TZP Piperacillin/Tazobactam, SCF Cefoperazone/sulbactam, RD Rifampicin, AMP Ampicillin, LEV Levofloxacin, CIP Ciprofloxacin, ATM Aztreonam, CTX Cefotaxime, SAM Ampicillin/Sulbactam, IPM Imipenem, PRL Piperacillin, CAZ Ceftazidime, SXT Trimethoprim/sulfamethoxazole.
Discussion
Cupriavidus gilardii (C. gilardii) is a Gram-negative, aerobic and glucose-nonfermenting bacillus that was first identified by Coenye et al. in 1999 [8]. The taxonomic history for this species is complex. The organism has been known by various names, including Ralstonia gilardii, Wautersia gilardii, and C. gilardii [10], [15]. C. gilardii has been characterized as an organism with low pathogenicity that causes opportunistic infections as three cases of infection caused by this organism were immunodeficient. One additional case caused by C. gilardii was described by Wauters et al. in 2001. The organism was the cause of catheter-related sepsis in a 7-year-old girl with acute lymphoblastic leukemia [15]. A bloodstream isolate from the patient was identified as Ralstonia gilardii, which was found to be susceptible to ceftazidime, cefuroxime, ceftriaxone, ofloxacin, imipenem, cotrimoxazole. After combination with antimicrobials, her sepsis resolved completely [15]. A fatal case caused by C. gilardii was described by Karafin et al. in 2010 [12]. C. gilardii was recovered from the throat, stool, and blood of a 12-year old female with severe idiopathic aplastic anemia. It seems that the patient’s underlying immunosuppression and the organism developed new antimicrobial resistances gave rise to fatal outcome. In addition, Tena et al. reported an infection caused by C. gilardii in 2014 [14]. The patient with a muscular abscess on the right thigh caused by C. gilardii in an immunocompromised patient, who had suffered a septic shock associated with an extensive cellulitis caused by Streptococcus pyogenes. The patient was successfully treated with intravenous Ciprofloxacin and surgical drainage. Therefore, C. gilardii should be considered as a cause of human infection, especially in immunocompromised patients. Recently, one case of pacemaker-associated bloodstream infection caused by C. gilardii in a 90-year old woman without obvious immunodeficiency [13]. The patient was treated with different antimicrobial agents at different points in time based in part on the blood culture results and in part on the patient’s response to therapy. Because of the acquisition of antimicrobial resistance during treatment, the antimicrobial agent was changed during the course of treatment. Meanwhile, the patient of our case was elderly (87 years old) that is similar to a case of pacemaker-associated bloodstream infection caused by C. gilardii in a 90-year old woman without obvious immunodeficiency [13]. The bacterial strain was verified as C. gilardii strain AU6442 according to sequencing analysis of the 16S rRNA gene using DNA extracted from the isolates. The patient was succesfully treated with piperacillin/tazobactam after the known antibiogram of this strain. Although he had no obvious immunodeficiency, his elderly age might have affected the expression of pathogenicity of C. gilardii.
Conclusion
The pathogenicity of C. gilardii is unknown, the frequency with which it has caused human disease and rare colonizer of human tissues has been masked by the difficulty in accurate species identification, genetics and phenotypic behavior. C. gilardii previously reported have been found have intrinsic antimicrobial resistance and the ability to acquire resistance to other antimicrobial agents were observed in different isolates from the present patient as well as previous reports. Our case report represents the fifth identified infection caused by C. gilardii. This is the second report of an infection of C. gilardii in an older patient without obvious immunodeficiency. Our isolate, C. gilardii was multidrug resistant, including meropenem, amikacin, rifampicin and ampicillin and susceptible to cefepime, ofloxacin, piperacillin/tazobactam, levofloxacin, ciprofloxacin, aztreonam, imipenem, piperacillin, ceftazidime. This patient was successfully treated with Piperacillin/tazobactam when the antibiogram was available. Although the true pathogenicity of C. gilardii is unclear, the present case and another case report of infection in a 90-year old female patient represent the identified infection caused by C. gilardii in patients without immunodeficiency. The possibility that this organism may represent an emerging pathogen in both patients with or without immunodeficiency and its ability to acquire new resistances as it colonizes its human host. Understanding the nature and pathogenicity of C. gilardii, a large number of further cases caused by this organism is urgent needed.
Conflict of interest
The authors declare no conflicts of interests.
Acknowledgments
This work was funded by innovation projects of Chongqing General Hospital (Grant No. 2016MSXM28), The general program of Chongqing Science and Technology Commission (Grant No. cstc2017jcyjA0560).
References
- 1.Cuadrado V., Gomila M., Merini L., Giulietti A.M., Moore E.R. Cupriavidus pampae sp. nov., a novel herbicide-degrading bacterium isolated from agricultural soil. Int J Syst Evol Microbiol. 2010;60:2606–2612. doi: 10.1099/ijs.0.018341-0. [DOI] [PubMed] [Google Scholar]
- 2.Coenye T., Goris J., De Vos P., Vandamme P., LiPuma J.J. Classification of Ralstonia pickettii-like isolates from the environment and clinical samples as Ralstonia insidiosa sp. nov. Int J Syst Evol Microbiol. 2003;53:1075–1080. doi: 10.1099/ijs.0.02555-0. [DOI] [PubMed] [Google Scholar]
- 3.Janssen P.J., Van Houdt R., Moors H., Monsieurs P., Morin N., Michaux A. The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments. PLoS One. 2010;5:e10433. doi: 10.1371/journal.pone.0010433. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4.Poehlein A., Kusian B., Friedrich B., Daniel R., Bowien B. Complete genome sequence of the type strain Cupriavidus necator N-1. J Bacteriol. 2011;193:5017. doi: 10.1128/JB.05660-11. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5.Lykidis A., Perez-Pantoja D., Ledger T., Mavromatis K., Anderson I.J., Ivanova N.N. The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader. PLoS One. 2010;5:e9729. doi: 10.1371/journal.pone.0009729. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Amadou C., Pascal G., Mangenot S., Glew M., Bontemps C., Capela D. Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia. Genome Res. 2008;18:1472–1483. doi: 10.1101/gr.076448.108. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7.Wang X., Chen M., Xiao J., Hao L., Crowley D.E., Zhang Z. Genome sequence analysis of the naphthenic acid degrading and metal resistant bacterium cupriavidus gilardii CR3. PLoS One. 2015;10:e0132881. doi: 10.1371/journal.pone.0132881. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Coenye T., Falsen E., Vancanneyt M., Hoste B., Govan J.R., Kersters K. Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov. Int J Syst Bacteriol. 1999;49(Pt. 2):405–413. doi: 10.1099/00207713-49-2-405. [DOI] [PubMed] [Google Scholar]
- 9.Coenye T., Vandamme P., LiPuma J.J. Infection by Ralstonia species in cystic fibrosis patients: identification of R. pickettii and R. mannitolilytica by polymerase chain reaction. Emerg Infect Dis. 2002;8:692–696. doi: 10.3201/eid0807.010472. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Vandamme P., Coenye T. Taxonomy of the genus Cupriavidus: a tale of lost and found. Int J Syst Evol Microbiol. 2004;54:2285–2289. doi: 10.1099/ijs.0.63247-0. [DOI] [PubMed] [Google Scholar]
- 11.De Baere T., Steyaert S., Wauters G., Des Vos P., Goris J., Coenye T. Classification of Ralstonia pickettii biovar 3/‘thomasii’ strains (Pickett 1994) and of new isolates related to nosocomial recurrent meningitis as Ralstonia mannitolytica sp. nov. Int J Syst Evol Microbiol. 2001;51:547–558. doi: 10.1099/00207713-51-2-547. [DOI] [PubMed] [Google Scholar]
- 12.Karafin M., Romagnoli M., Fink D.L., Howard T., Rau R., Milstone A.M. Fatal infection caused by Cupriavidus gilardii in a child with aplastic anemia. J Clin Microbiol. 2010;48:1005–1007. doi: 10.1128/JCM.01482-09. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13.Kobayashi T., Nakamura I., Fujita H., Tsukimori A., Sato A., Fukushima S. First case report of infection due to Cupriavidus gilardii in a patient without immunodeficiency: a case report. BMC Infect Dis. 2016;16:493. doi: 10.1186/s12879-016-1838-y. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Tena D., Losa C., Medina M.J., Saez-Nieto J.A. Muscular abscess caused by Cupriavidus gilardii in a renal transplant recipient. Diagn Microbiol Infect Dis. 2014;79:108–110. doi: 10.1016/j.diagmicrobio.2014.01.023. [DOI] [PubMed] [Google Scholar]
- 15.Wauters G., Claeys G., Verschraegen G., De Baere T., Vandecruys E., Van Simaey L. Case of catheter sepsis with Ralstonia gilardii in a child with acute lymphoblastic leukemia. J Clin Microbiol. 2001;39:4583–4584. doi: 10.1128/JCM.39.12.4583-4584.2001. [DOI] [PMC free article] [PubMed] [Google Scholar]