Abstract
The blood–brain barrier (BBB) is a formidable obstacle to the delivery of therapeutics to the brain. Antibodies that bind transferrin receptor (TfR), which is enriched in brain endothelial cells, have been shown to cross the BBB and are being developed as fusion proteins to deliver therapeutic cargos to brain targets. Various antibodies have been developed for this purpose and their in vivo evaluation demonstrated that either low affinity or monovalent receptor binding re‐directs their transcellular trafficking away from lysosomal degradation and toward improved exocytosis on the abluminal side of the BBB. However, these studies have been performed with antibodies that recognize different TfR epitopes and have different binding characteristics, preventing inter‐study comparisons. In this study, the efficiency of transcytosis in vitro and intracellular trafficking in endosomal compartments were evaluated in an in vitro BBB model for affinity variants (K d from 5 to174 nM) of the rat TfR‐binding antibody, OX26. Distribution in subcellular fractions of the rat brain endothelial cells was determined using both targeted quantitative proteomics‐selected reaction monitoring and fluorescent imaging with markers of early‐ and late endosomes. The OX26 variants with affinities of 76 and 108 nM showed improved trancytosis (Papp values) across the in vitro BBB model compared with a 5 nM OX26. Although ~40% of the 5 nM OX26 and ~35% of TfR co‐localized with late‐endosome/lysosome compartment, 76 and 108 nM affinity variants showed lower amounts in lysosomes and a predominant co‐localization with early endosome markers. The study links bivalent TfR antibody affinity to mechanisms of sorting and trafficking away from late endosomes and lysosomes, resulting in improvement in their transcytosis efficiency.
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Cover Image for this issue: doi: 10.1111/jnc.14193.
Keywords: affinity optimization, blood–brain barrier, intracellular trafficking, quantitative targeted proteomics, transferrin receptor antibody
Abbreviations used
- ADAM
a disintegrin and metalloproteinase
- BBB
blood–brain barrier
- BEC
brain endothelial cells
- BME
basal medium eagle
- CDR
complementarity determining region
- CHO
Chinese hamster ovary
- DMEM
Dulbecco's modified Eagle's medium
- EDTA
ethylenediaminetetraacetic acid
- EEA1
early endosome antigen 1
- HBSS
Hank's balanced salt solution
- HDF
high‐density fractions
- HRP
horseradish peroxidase
- IgG
immunoglobulin G
- LAMP1
lysosomal‐associated membrane protein 1
- LDF
low‐density fractions
- nanoLC MS/MS
Nano‐liquid chromatography mass spectrometry
- PBS
physiological buffered saline
- RAs
rat astrocytes
- RFP
red fluorescent protein
- RMT
receptor‐mediated transcytosis
- RRID
research resource identifier
- SDS‐PAGE
sodium dodecyl sulfate polyacrylamide gel electrophoresis
- SNARE
soluble N‐ethylmaleimide‐sensitive factor activating protein receptor
- SRM
selected reaction monitoring
- SV‐ARBEC
SV40‐immortalized adult rat brain endothelial cells
- TCEP
tris(2‐carboxyethyl)phosphine
- TfR
transferrin receptor
- UPLC
ultra performance liquid chromatography
- VHDF
very high‐density fractions
Delivery of antibodies into the brain is highly restricted because of a tightly sealed layer of endothelial cells in brain microvessels that form the blood–brain barrier (BBB). Improved brain delivery of antibodies can be achieved via receptor‐mediated transport. A group of receptors expressed on the luminal surface of brain endothelial cells (BEC) are involved in constitutive or stimulated internalization, transport to the abluminal side and recycling, carrying and delivering ‘large’ protein ligands required for brain homeostasis, such as receptors for transferrin, insulin, insulin‐like growth factors or lipids (Lajoie and Shusta 2015). The effective delivery of pharmacologically active therapeutic payloads across the BBB can be achieved using antibodies that hijack the pathways mediated by these receptors (Lajoie and Shusta 2015). While the proof of concept of this approach has been demonstrated in rodents and non‐human primates, and is currently being tested in clinical trials, the understanding of mechanisms of transcytosis across the BEC remains sparse. The most studied receptor‐mediated transport receptor on the BBB is transferrin receptor (TfR). Studies with species‐selective mouse (Ri7; 8D3) (Manich et al. 2013; Cabezon et al. 2015) and rat (OX26) (Moos and Morgan 2001) antibodies binding TfR with high affinity, have yielded controversial results regarding their ability to efficiently transcytose the BBB and release into brain parenchyma. Most studies observed efficient brain vessel targeting and internalization of these antibodies, aided by TfR enrichment in BEC, but also their minimal ‘release’ into brain parenchyma. Recently, TfR antibodies re‐engineered in various antibody formats have been shown to more efficiently release into the brain parenchyma when their affinities are lowered or when the receptor is engaged by a monovalent antibody. In a recent study (Bien‐Ly et al. 2014), high‐affinity monovalent anti‐TfR antibodies increased TfR internalization and altered the trafficking patterns and fate of the receptor in BEC by inducing TfR movement toward lysosomal degradation; similarly, these anti‐TfR antibodies caused TfR degradation in the brain parenchyma, supporting the hypothesis that cellular TfR trafficking is altered from recycling to degradation because of high‐affinity anti‐TfR binding (Yu et al. 2011). Although similar results were reported by Niewoehner and co‐workers (Niewoehner et al. 2014), they argued that the recycling rate of TfR engaged with bivalent TfR antibody is defective and that monovalent mode of TfR binding enables its escape from lysosmal pathway and degradation, regardless of the receptor binding affinities. In a recent study, (Villaseñor et al. 2016) they showed a preferential sorting of a monovalent TfR antibody into sorting tubules which facilitated transcytosis across the BBB. However, a bivalent antibody that bound TfR in a pH‐sensitive fashion with lower affinity at acidic pH, typical of endosomal compartments, was found to escape degradation and release more efficiently on abluminal side of the BBB model in vitro (Sade et al. 2014). These studies were based on immunofluorescence co‐localization of antibodies with markers of early endosomes or lysosmes and were, at most, semiquantitative. Recently, (Thom et al. 2018), we found that lowering the affinity of OX26 from 5 nM to a range of 76–108 nM resulted in a > 50‐fold improved brain exposure over 96 h, because of both improved serum pharmacokinetics and higher transcytosis efficiency.
In this study, internalization and sorting of these OX26 affinity variants and TfR were evaluated in 20 subcellular fractions of rat BEC using quantitative, multiplexed mass spectrometry (SRM) methods in combination with immunofluorescence. Lowering the affinity of OX26 to 76–108 nM range resulted in a higher proportion of the antibody being sorted into high‐density subcellular fractions (HDF), which contained markers of early endosomes and recycling endosomes. The levels in HDF also matched the improvement in transcytosis across the BBB model in vitro. This study demonstrates that affinity engineering, in the absence of monovalent receptor binding, is sufficient to re‐direct TfR antibody intracellular trafficking away from lysosomes and to improve the efficiency of their transcytosis.
Materials and methods
Protein expression and purification
OX26 affinity variants were developed, expressed, and purified as described in detail previously (Thom et al. 2018). Briefly, DNA encoding the VH and VL of the mouse anti‐rat TfR antibody OX26 was synthesized by Life Technologies (Carlsbad, CA, USA) and cloned into expression vectors containing the appropriate light or heavy chain constant regions (Persic et al. 1997). Single alanine substitutions were introduced into HCDR1, HCDR3, or LCDR3 and the resulting mutants were characterized using an assay in which binding was monitored using the Octet RED384 System (Pall ForteBio LLC, Fremont, CA, USA) with anti‐hIgG capture Biosensors (18‐5060, Pall ForteBio LLC). An affinity of 5 nM was determined for wild‐type OX26 and the single alanine substitutions HCDR1 W33A, LCDR3 W96A, and HCDR3 F99A resulted in variant antibodies with K D values of 76, 108, and 174 nM, respectively. These were then named as OX26 with a suffix denoting the affinity (OX265, OX2676, OX26108, and OX26174) (Thom et al. 2018). Unless otherwise stated, OX26 variants and the control antibody, NiP228, an antibody against 4‐hydroxy‐3‐iodo‐5‐nitrophenylacetic acid (Webster et al. 2017), were expressed as chimeric human IgG1 molecules with the S239D/A330L/I332E triple mutation (IgG1 TM) (Oganesyan et al. 2008). Antibodies were expressed in transiently transfected Chinese hamster ovary (CHO) cells in serum‐free media as described previously (Daramola et al. 2014). The concentration of IgG was determined by A 280 using an extinction coefficient based on the amino acid sequence of the IgG (Pace et al. 1995). To allow site‐specific conjugation of fluorescent labels, antibodies were generated containing three cysteine residues introduced into the solvent‐exposed surface of the Fc region (Thompson et al. 2016). In some experiments, fusion of A20.1, a camelid single‐domain antibody against C. difficile toxin B, and the mouse Fc (A20.1mFc), also expressed in CHO cells, was used for normalization of responses across experimental groups.
Rat brain endothelial cell line
An immortalized adult rat brain microvascular endothelial cell line, SV40‐immortalized adult rat brain endothelial cells (SV‐ARBEC) [(Muruganandam et al. 1997; Garberg et al. 2005); supplementary materials], was used for cellular internalization studies, in vitro transcytosis assays, and for endosome isolation and characterization. SV‐ARBEC cell line is not listed as commonly misidentified cell line by the ICLAC. The karyotype authentication of SV‐ARBEC was performed in 2003 prior to banking. Cells were banked at passage 76 and used in these studies between passage 78 and 86. The expression of rat‐specific genes/variants was confirmed using high‐throughput sequencing in 2017. SV‐ARBEC cells were grown in M199‐based feeding media (316‐010‐CL, Wisent, St‐Bruno, Quebec) containing: 0.25% Peptone (P‐5905), 0.9% d‐glucose (G‐8769), BME Amino Acids (B6766), BME Vitamins (B6891) – all from Sigma‐Aldrich (St. Louis, MO, USA); 10% heat‐inactivated fetal bovine serum (SH30396.03, Hyclone, Fisher Scientific, Ottawa, ON, USA) and antibiotic/antimycotic as previously described.
The overall study design is schematically shown in Fig. 1.
Western blot analyses
Cell lysates of SV‐ARBEC were prepared in RIPA buffer (50 mM Tris, pH 7.4, 150 mM NaCl, 2 mM ethylenediaminetetraacetic acid (EDTA), 0.1% sodium dodecyl sulfate (SDS), 1% Deoxycholate, 1% triton X‐100) containing protease inhibitor cocktail (11697498001, Roche, Laval, QC, USA). Proteins were separated by 8% sodium dodecyl sulfate polyacrylamide gel electrophoresis, transferred to nitrocellulose (162‐0115, Bio‐Rad, Mississauga, ON, USA), and probed with human‐rat‐cross reactive anti‐Transferrin Receptor antibody (13‐6800, RRID:AB_86623, Thermofisher Scientific, Nepean, ON, USA), followed by the horseradish peroxidase‐conjugated anti‐mouse secondary antibodies (315‐035‐045, RRID:AB_2340066, Jackson ImmunoResearch, West Grove, PA, USA). Blots were developed with Immunstar ECL kit (170‐5060, Bio‐Rad, Mississauga, ON, USA) and imaged on a FluorChem 8900 imager (Alpha Innotech, San Leandro, CA, USA). Images were processed using Adobe Photoshop (Adobe Systems Incorporated). For quantification, blots were stripped using 1 M Tris pH 6.8 (0497, Amresco, Solon, OH, USA), 2% SDS (L4509, Sigma Aldrich, St‐Louis, MO, USA), and 0.7% β‐mercaptoethanol (M7154, Sigma Aldrich, St‐Louis, MO, USA), and were re‐probed with β‐actin‐horseradish peroxidase antibodies (A3854, RRID:AB_262011,Sigma, Oakville, ON, USA).
Antibody internalization into SV‐ARBEC cells
OX26 and control antibody variants containing engineered cysteines in their Fc region were labeled using Alexa 680 maleimide (A‐20344, Thermo Fisher Scientific, Rockford, IL, USA). The antibodies were reduced at 25°C for 2 h using a 40‐fold molar excess of tris(2‐carboxyethyl)phosphine (PG82089, Thermo Fisher Scientific) to generate free sulfhydryl groups (–SH). The tris(2‐carboxyethyl)phosphine was then removed using ZEBA desalting spin columns (87768, Thermo Fisher Scientific). The antibodies were then re‐oxidized with a 20‐fold molar excess of dehydroascorbic acid (dhAA) (262556, Sigma‐Aldrich) for 3.5 h at RT. The remaining free sulfhydryl groups (–SH) were reacted with a 10‐fold molar excess of AL680 maleimide for 1 h at RT followed by 24 h at 4°C. A four‐fold molar excess of N‐acetyl‐L‐cysteine (NAC) (A7250, Sigma‐Aldrich) was added for 1 h at RT at the end of the reaction to block any residual sulfhydryl. The antibodies were then purified using ZEBA desalting spin columns and further purified and concentrated using Amicon 4 (Ultracel‐30) spin columns (UFC803096, Millipore, Burlington, ON, USA). Protein concentration and dye to protein ratios were determined by measuring A280 and A679.
SV‐ARBEC cells (p83) were plated on a rat tail collagen I – (CACB354326 or 354236, BD Biosciences, San Jose, CA, USA) coated cover slips in a 24‐well plate and used for uptake studies at ~90% confluency. Cells were rinsed in 1× Hank's buffered saline solution (HBSS) (311‐513‐CL, Wisent, St‐Bruno, QC, USA) and 500 μL of cold Dulbecco's modified Eagle's medium (DMEM) (319‐005‐CL, Wisent, St‐Bruno, QC, USA) was added to each coverslip; cells were further kept on ice for 10 min. Cells were then incubated with a) 300 μL DMEM or b) 300 μL DMEM containing neutralized Al680 or c) 300 μL of each Al680‐labeled antibody in DMEM at 1.25 μM concentration for 15 min at 4°C. Cells were then washed 3× with cold DMEM, supplemented with 500 μL cold DMEM and incubated at 37°C for 45 min. At the end of incubation period, cells were washed with 1 mL cold DMEM, cover slips were fixed in 10% Formalin (SF‐100‐4, Thermofisher, Fair Lawn, NJ, USA) for 10 min at 25°C, washed again 2× in physiological buffered saline (PBS) (311‐010‐CL, Wisent, St‐Bruno, QC, USA) and stored in PBS at 4°C overnight. Coverslips were mounted in Dako Fluorescent Mounting Medium (S3023, Dako, Burlington, ON, USA) spiked with 2 μg/mL of Hoechst33342 (H3570, Life Sciences, Burlington, ON, USA) to stain cell nuclei and were then observed under Olympus 1 × 81 fluorescent microscope (40× oil objective, NA 1.42).
BBB model in vitro
In vitro BBB permeability assays were performed using recently described protocols (Farrington et al. 2014; Webster et al. 2016). In brief, SV‐ARBEC were seeded at 80 000 cells/membrane on rat tail collagen coated 0.83 cm2 Falcon cell inserts, 1 μm pore size (353103, Corning, Durham, NC, USA) in 1 mL SV‐ARBEC feeding media without phenol red. The inserts were placed in the wells of a 12‐well tissue culture plate containing 2 mL of 50 : 50 (v/v) mixture of SV‐ARBEC feeding media without phenol red and rat astrocyte‐conditioned media to generate a model of the BBB in vitro as described previously (Garberg et al. 2005). Upon culturing, a barrier phenotype develops restricting the passage of molecules between chambers; permeability was monitored and the cultures used only when Pe[sucrose] was between 0.4 and 0.6 [×10−3] cm/min. Transport experiments were performed as described previously (Haqqani et al. 2013a) by adding an equimolar mixture (1.25 μM) of antibodies to the top chamber and by collecting a 100 μL aliquot from the bottom chamber at 90 min for simultaneous quantification of both the antibodies using the multiplexed SRM method. In these studies, the media in the upper chamber contained 5% fetal bovine serum. The apparent permeability coefficient Papp was calculated as described previously (Artursson and Karlsson 1991).
Endosome isolation
Endosome isolation and characterization was performed as described recently (Haqqani et al. 2018). SV‐ARBEC were grown to confluency on rat tail collagen type I‐coated plastic dishes, as described previously (Garberg et al. 2005). Four 150 mm confluent dishes of SV‐ARBECs were washed with HBSS and incubated separately with 0.3 μM of each OX26 variant for 45 min to trigger the receptor‐mediated transport pathway. At the end of incubation, cells were washed twice with HBSS and scraped in ice‐cold Buffer A (250 mM sucrose, 20 mM tricine, 1 mM EDTA) at 4°C. The suspension was homogenized using a loose Dounce homogenizer (20 strokes) on ice. The homogenate was centrifuged at 1000 g (Eppendorf 5417R) for 10 min at 4°C and the supernatant (post‐nuclear fraction) was transferred to a fresh tube. The pellet was re‐homogenized and re‐centrifuged, and the resulting supernatant added to post‐nuclear fraction. The fraction was overlaid on 23 mL of 30% Percoll (17‐0891‐02, GE Healthcare, Chicago, IL, USA), diluted in Buffer A and centrifuged at 84 000 g for 30 min at 4°C in Optima TLX ultracentrifuge with 60 Ti rotor (Beckman Coulter, Mississauga, ON, USA). Plasma membrane (opaque‐white top layer) was collected and transferred to a fresh ultracentrifuge tube, to which 1.84 mL of Buffer B (50% Optiprep, 250 mM sucrose, 120 mM tricine, 6 mM EDTA) and 0.16 mL of Buffer A was added. The layer was overlaid with 3.5 mL of 20% and 3.5 mL of 10% Optiprep. The gradient was centrifuged at 100 000 g (Beckman) for 90 min in a SW40 rotor at 4°C. The separation was split into top and bottom parts and transferred to separate tubes. Each one was mixed with 4 mL of Buffer B and overlaid with 2 mL of 5% Optiprep. The gradient was centrifuged at 100 000 g (Beckman) for 18 h in a SW40 rotor at 4°C. A total of 20 equal fractions were collected and prepared for mass spectrometry.
The enrichment of various molecular markers in isolated fractions was evaluated using western blot and mass spectrometry as recently described (Haqqani et al. 2018). These studies identified low‐density fractions 2‐4 (LDFs) as late endosomes and lysosomes, high‐density fractions 4‐7 (HDFs) as early and recycling endosomes, and very high‐density fractions 8‐10 (VHDFs) as a subset of multivesicular bodies. The same designations are used in this study.
Sample preparation for mass spectrometry
Samples from in vitro BBB model and endosome preparations were further processed for subsequent analysis by nanoLC‐SRM. Briefly, pure variants and samples from in vitro BBB model were reduced, alkylated, and trypsin digested using the previously described method (Haqqani et al. 2008). For endosome preparation, a filtered‐aided sample preparation method was used to prepare the samples for mass spectrometry (Wiśniewski et al. 2009). Briefly, each sample was reduced in 3.5% SDS, 100 mM Tris‐HCl, 100 mM dithiothreitol by boiling for 10 min. A 6.6‐volume of urea solution (8M Urea, 100 mM Tris‐HCl, pH 8.5) was added to the sample and they were transferred to pre‐wetted Amicon Ultra‐4 (Ultracel‐30) spin columns and spun as per manufacturer's instructions. The proteins were washed three times with the urea solution, alkylated [10 mM iodoacetamide (I1149, Sigma‐Aldrich), 30–60 min at room 20°C in dark], and then washed four times with the urea solution and four times with 50 mM ammonium bicarbonate (A6141, Sigma Aldrich, St‐Louis, MO, USA). The samples were digested using trypsin at 37°C and the peptides were eluted for SRM analysis.
Mass spectrometry and selected reaction monitoring (SRM)
OX26 affinity variants and control antibody levels in samples from in vitro BBB model and in endosomal cell fractions were trypsin digested (see above) and quantified using targeted nanolc ms/MS on nanoAcquity UPLC (Waters, Milford, MA, USA) coupled to ESI LTQ XL ETD mass spectrometer (ThermoFisher) as previously described (Haqqani et al. 2018). Briefly, the samples were injected onto a PepMap100, 5 μm 100 angstrom C18 trap (160454, ThermoFisher, Waltham, MA, USA) followed by eluting onto a 100 μm I.D. × 10 cm 1.7 μm BEH130C18 nanoLC column (186003546, Waters) using a gradient from 0% to 20% acetonitrile (in 0.1% formic acid) in 1 min, 20 to 46% in 60 min, and 46 to 95% in 1 min at a flow rate of 400 nL/min. Data were acquired on ions with mass/charge (m/z) values between 400 and 2000 with 1.0 s scan duration and 0.1 s interscan interval. To develop the SRM assay for proteins, samples (pure antibodies and endosome fractions) were first analyzed by nanoLC MS/MS using data‐dependent acquisition to identify ionizible peptides of antibodies and of known receptor‐mediated transport receptors and markers of early endosomes, late endosomes, and lysosomes. The spectra were validated and multiplexed methods were created for SRM analysis to perform targeted quantification of multiple proteins in each fraction. SRM analyses were carried out using these multiplexed methods and signatures described in Tables S1 and S2. For ILIS‐based quantification, isotopically heavy versions of the peptides were synthesized (New England Peptide LLC, Gardner, MA, USA) containing heavy C‐terminus K (+8 Da). SRM analyses were carried out as previously described (Haqqani et al. 2013a). Results were analyzed using Skyline software (version 3.7.0.10940, RRID:SCR_014080) freely available from MacCross Lab (University of Washington, WA, USA).
Immunofluorescence
SV‐ARBEC cells were grown to semi‐confluence (60 000 cell/coverslip) on glass coverslips coated with the rat tail collagen I in a 24‐well plate for 2 days. Cells were then transduced overnight with 25 μL/coverslip (~40 particles/cell) of either BacMam 2.0 Early Endosomes‐RFP (Rab5‐RFP) (C10587) or Late Endosomes‐RFP (Rab7‐RFP) (C10589), or lysosomes (Lamp1‐RFP) (C10597) (all Life Sciences). Cells were washed two times in DMEM then incubated with neutralized near‐infrared fluorescent probe Cy5.5 (PA15604, Life Sciences) diluted in DMEM, or with 5 μg of various antibodies labeled with Cy5.5 at 37°C for 30 min. Cells were then washed three times in DMEM and two times in PBS. Coverslips were fixed in 4% formaldehyde in PBS for 10 min at 20°C, washed three times in PBS and permeabilized in 0.1% TritonX‐100 for 3 min. After washing in PBS, cells were stained with 1 : 2000 Alexa Fluor 488 Phalloidin (A12379, RRID:AB_2315147, Life Sciences) for 5 min at RT to label F‐actin filaments. After washing in PBS, coverslips were mounted in Dako Fluorescent Mounting Medium (S3023, Dako, Burlington, ON, USA) spiked with 2 μg/mL of Hoechst33342 (Life Sciences) to stain cell nuclei and were then observed under Olympus 1 × 81 fluorescent microscope (60× oil objective, NA 1.42).
Statistical analyses
The personnel performing in vitro BBB assay studies and cellular uptake studies were blinded toward the ‘test articles’ used. Analytical measurements (multiplexed SRM) were performed by a separate organizational unit (Mass Spectrometry and Proteomics team) who were unblinded to experimental treatments. One‐way analysis of variance (anova) followed by Dunnett post hoc comparison of means was used to determine statistically significant differences between means of multiple independent groups (BBB‐crossing antibodies) against a control group (non‐BBB‐crossing antibodies). All statistical methods were carried out using GraphPad Prism® 7.04 software. This study was not pre‐registered. The statistical methods to pre‐determine sample size were not employed, and no randomimzation methods were employed in this study.
Results
TfR expression in SV‐ARBEC cells and its co‐localization with markers of early and late endosomes
The TfR receptor expression in SV‐ARBEC cells, as well as in rat astrocytes (Rs) was analyzed by western blot (Fig. 2a) using a human‐rat cross‐reactive anti‐TfR antibody. TfR in the cell membrane appears in different mono‐ or homodimerized forms depicted in the schematic in Fig. 2a, adapted from (Kaup et al. 2002), because of proteolytic processing and shedding by various membrane proteases, including A disintegrin and metalloproteinase (Kaup et al. 2002). Altogether six TfR fragments were detected and identified by size and immunological characteristics as follows: ∼190‐kDa dimer of TfR (TfR:TfR), ∼110‐kDa dimer of TfR lacking one extracellular domain (TfR:mfTfR), ∼90‐kDa monomeric TfR (TfR), ∼80‐kDa soluble monomeric TfR (sTfR), ∼25‐kDa dimer of TfR lacking both extracellular domains (mfTfR:mfTfR), and ∼13‐kDa monomeric membrane fragment (mfTfR). The prevalence of these forms in different cell types is variable; in SV‐ARBEC used for these studies, the forms with one extracellular domain were dominant (Fig. 2a); the band at ~110kD corresponds to the TfR:mfTfR, whereas the lower band (~90kD) corresponds to the monomeric TfR as described by Kaup (Kaup et al. 2002). In some cultures, an apparent full dimeric receptor was detectable at MW ~210 kD (data not shown).
TfR:mfTfR form showed much higher levels by western blot in SV‐ARBEC cells compared to RAs (Fig. 2a), consistent with the known enrichment of TfR in rat BEC (Enerson and Drewes 2006).
Next, we evaluated TfR distribution in various SV‐ARBEC intracellular compartments. Recently, we have described gradient fractionation and quantitative protein characterization of subcellular fractions of SV‐ARBEC using nanoLC‐SRM (Haqqani et al. 2018). The low‐density fractions (LDF 2‐4) contained markers of late endosomes/lysosomes (Lamp 1/2, rM6pr, Rab7a, Rab11a/b), whereas high‐density fractions (HDF 5‐7) were enriched in markers of early and recycling endosomes (Rab5a, Eaa1) [(Haqqani et al. 2018); Table 3]; very high‐density fractions (VHDF 8‐10) exhibited unique profile of markers, similar to some subpopulations of microvesicular bodies (Haqqani et al. 2018). In SV‐ARBEC cultured in transferrin‐containing media (TIBC‐235 μg/dL) TfR was distributed 25:75% between LDFs and HDFs (Fig. 2b). The late endosome and lysosome markers (Rab 7, M6Pr, and LAMPs) peaked in LDF fractions 2‐4, whereas early and recycling endosome markers (EEA and Rab 5) peaked in HDFs late endosome fractions 5‐8 (Fig. 2b, Table S3). An expanded list of proteins enriched in LDFs and HDFs in SV‐ARBECs under basal conditions is shown in Table S3. Notably, clathrin, vesicle‐soluble N‐ethylmaleimide‐sensitive factor activating protein receptor (SNARE) family member cellubrevin (VAMP3), low‐density lipoprotein‐related protein‐1 (LRP‐1), insulin receptor, insulin growth factor 1 receptor (IGF1R), the membrane P4‐ATPase flippase ATP8b1 and its β‐subunit TMEM30A, previously identified as target for the BBB‐crossing single‐domain antibody FC5, were all enriched in HDF fractions (Table S3 ). LDFs were enriched in caveolin‐1, flotilin‐1, vesicle‐SNARE member synaptobrevin (VAMP family) and its interacting protein synaptosomal‐associated protein 23 (SNAP23), both essential components of the general membrane fusion machinery and important regulators of transport vesicle docking and fusion (Table S3). Interestingly, known receptor‐mediated transcytosis receptors, including TfR, were all enriched in HDF fractions (Table S3).
OX26 affinity variant internalization and transcytosis across SV‐ARBEC cells
The binding of OX26 affinity variants to SV‐ARBEC as well as enhanced brain exposure of lower affinity variants has been reported recently (Thom et al. 2018). In this study, we examined the internalization and intracellular distribution of these variants. Both fluorescently labeled OX265 and OX2676 showed strong internalization into SV‐ARBEC (Fig. 3a), in contrast to no appreciable internalization of the control antibody NiP228 (Fig. 3a). Although OX265 was detected in large vesicles surrounding cell nuclei (Fig. 3a), lower affinity OX2676 showed more diffuse distribution within cells (Fig. 3a). Internalization of OX26108 was similar to that of OX2676, whereas OX26174 showed significantly reduced internalization compared with other variants (fluorescence data not shown – see quantitative levels in the subsequent section).
The rate of transcytosis of OX26 affinity variants was examined in a BBB model in vitro formed by SV‐ARBEC cells as described previously (Garberg et al. 2005; Farrington et al. 2014; Webster et al. 2016). A single domain antibody against C. difficile toxin B, A20.1 (17kD) (Hussack et al. 2011) was added together with each ‘test antibody’ into top compartments and levels of antibodies transmigrated across endothelial monolayer were measured after 90 min using multiplexed SRM. A20.1 and the control IgG, NiP228, showed low levels in bottom chambers in each measurement (Fig. 3b). Given that A20.1 and NiP228 do not bind mammalian receptors, their minimal crossing of the BEC monolayer may be because of either low paracellular migration or non‐specific pinocytosis or both. In contrast, OX265, OX2676, OX26108, and OX26174 levels in the bottom compartments of the model were 4‐fold, 9‐fold, 13‐fold and 2.5‐fold higher, respectively, from those of co‐administered A20.1 or from that of the control IgG, NiP228 (Fig. 3b). Affinity variants OX2676 and OX26108 showed ~twofold and ~threefold higher Papp values, respectively, compared to high‐affinity OX265 variant, whereas OX26174 Papp was lower than that of OX265. The high levels of OX26 variants crossing the BBB model in vitro were interpreted as receptor‐mediated (transcellular) transcytosis, in contrast to low levels of non‐specific transport of control A20.1 and NiP228 antibodies.
OX26 affinity variants sorting in subcellular compartments of SV‐ARBEC cells
SV‐ARBEC cells exposed to 0.3 μM of OX26 affinity variants for 45 min were fractionated as described (Haqqani et al. 2018) and levels of antibody variants, TfR, and markers of early (EEA1, Rab5) and late (Rab7, M6Pr, LAMP1) endosomes determined in each fraction using multiplex SRM method. In separate experiments, the internalization and co‐localization of OX26 variants with early and late endosomes were determined in SV‐ARBEC transfected with RFP‐labeled Rab5a and Lamp1, respectively, using immunofluorescent detection.
High‐affinity OX265 variant showed the highest internalization into SV‐ARBECs (total intracellular levels: 67.2 ± 3.1 amol) and distributed in LDF and HDF fractions at 38:62 ratio (Fig. 4a and b). LDF:HDF distribution of TfR in OX265‐exposed cells was 65 : 35 (Fig. 4 a and b), a significant re‐distribution into late‐endosome/lysosome‐containing LDF fractions compared to its ‘constitutive’ distribution into HDFs (Fig. 2b). While OX2676 showed lower internalization into SV‐ARBEC (25.9 ± 4.7 amol) compared with OX265, its intracellular distribution was high into HDF (LDF:HDF 15:85) and was accompanied with a predominant distribution of TfR into HDFs (LDF:HDF 30:70) (Fig. 4a and b). OX26108 (total internalized levels: 26.3 ± 2.1 amol) exhibited further increase in HDFs (LDF:HDF 6:94) with TfR partitioning 25:75 between LDF and HDFs (Fig. 4a and b). A small amount (9.48 ± 1.8 amol) of OX26174 that internalized into SV‐ARBEC, partitioned highly into LDFs (LDF:HDF 70 : 30), with TfR showing a similar re‐distribution toward LDFs (LDF:HDF 60 : 40) (Fig. 4a and b). The distribution of early and late endosome markers among LDFs and HDFs in SV‐ARBECs was similar under basal conditions (Fig. 2b) and among OX26 variant‐stimulated conditions (Fig. 4a and b).
Studies of OX265 and OX2676 internalization and co‐localization with Rab5a and Lamp‐1 in Rab5a‐RFP or Lamp‐1‐RFP transfected SV‐ARBEC cells (Fig. 5) confirmed the findings obtained in fractionated SV‐ARBEC by multiplexed nanoLC‐SRM. While OX265 co‐localized with both Rab5‐RFP and Lamp‐1‐RFP (Fig. 5a), OX2676 co‐localized with Rab5‐RFP only (Fig. 5b) and no co‐localization was detected with Lamp1‐RFP.
Overall, in the affinity range of 5‐108 nM, the proportion of OX26 affinity variants partitioning into early endosome‐containing HDFs was inversely correlated with their ability to transcytose the BBB model in vitro (Papp) (Fig. 6a). However, lowering the affinity further, resulted in the intracellular partitioning of OX26174 into LDFs, similar to that observed with the high‐affinity OX265 (Fig. 6b), although their internalized levels were vastly different. The data suggest a tight ‘window’ of optimal affinities at which the engagement of TfR with antibodies results in the traffic of receptor antibody complex similar to that observed with its natural ligand.
TfR expression in SV‐ARBEC after exposure to OX26 affinity variants
We examined whether the endosomal traffic of TfR triggered by various OX26 affinity variants may cause down‐regulation of TfR because of degradation. SV‐ARBECs were exposed to various OX26 affinity variants (0.3 μM) for 48 h, and TfR levels were evaluated by western blot (Fig. 7a). The only statistically significant change observed in this experiment was lowering the expression of TfR band (but not TfR:mTfR band) by OX265 (Fig. 7b). The down‐regulation ‘trend’ of both TfR:mTfR and TfR expression was also seen with OX2676 and OX26108, although these changes did not reach statistical significance (Fig. 7a and b). OX26174 did not affect the expression levels of either TfR form in SV‐ARBEC (Fig. 7 A&B).
Discussion
The findings of this study demonstrate that the intracellular distribution and endosomal sorting of TfR and TfR‐binding OX26 antibodies in rat BEC are affinity‐dependent and influence the antibody release on the abluminal side of the BBB model in vitro. The BBB transcytosis was inversely dependent on the proportion of the internalized antibody being sorted into late endosomes and lysosomes.
The transferrin receptor (TfR) is a type II transmembrane protein that mediates uptake of iron by binding the iron carrier protein transferrin (Tf). The 90 kDa TfR comprises a short cytoplasmic tail with an internalization motif, a membrane‐spanning portion, a stalk region which contains two disulfide bonds, which covalently link the two TfR monomers, and a large extracellular ectodomain (Feelders et al. 1999). Binding of human Tf (hTf) to TfR triggers conformational changes in the TfR (Eckenroth et al. 2011), which initiates its internalization. Following internalization of the complex, iron is released in the acidic endosomes and the TfR·Tf complex recycles back to the cell surface where apotransferrin is released at neutral pH. The TfR is highly expressed in brain endothelial cells and neurons (Jefferies et al. 1984), as well as in peripheral tissues, notably lung, liver, and reticulocytes (Chan and Gerhardt 1992).
Antibodies against TfR are being developed for delivery of therapeutics across the BBB; to avoid interference with the natural process of hTf/iron traffic into the brain, they should be raised to recognize epitopes in the extracellular domain of TfR away from Tf binding sites. TfR antibodies are internalized into BEC via a clathrin‐dependent receptor‐mediated endocytosis (Qian et al. 2002); at present, it is not clear whether (at least some) antibodies could trigger TfR internalization in the absence of Tf binding to the receptor. The mechanisms of their subsequent intracellular sorting and abluminal exocytosis are subject to current debate. Recent studies have shown that the TfR antibody binding affinity (Yu et al. 2011; Thom et al. 2018), pH‐dependency of binding (Sade et al. 2014), and valency (Niewoehner et al. 2014) can all affect the efficiency of antibody release on the abluminal side of the BBB. Reduced TfR antibody affinity in general (Yu et al. 2011), or at acidic pH of late endosomes (Sade et al. 2014), is postulated to facilitate its dissociation from TfR and abluminal release; while cross‐linking of TfR by high‐affinity bivalent antibodies, in contrast to monovalent antibodies, was shown to drive the complex into degradative pathway (Niewoehner et al. 2014). Although not systematically studied, the epitope on TfR engaged by various antibodies is likely an additional important attribute that determines the nature of receptor engagement and their intracellular fate.
In this study, bivalent TfR antibody OX26 affinity variants with a conserved binding epitope were used to study internalization and intracellular co‐localization with TfR and multiple markers of endosomal compartments in rat BEC using multiplexed quantitative mass‐spectrometry methods. These methods allowed a more precise molecular characterization of intracellular/endosomal fractions containing internalized antibodies. For example, in addition to markers of early endosomes, Rab5a and EEA1, other known receptor‐mediated transport receptors, insulin receptor (IR), insulin‐like growth factor 1 receptor (IGF1R), and LRP1 were ‘tracked’ to a clathrin‐containing high‐density cellular fractions (HDFs); in contrast, late endosome/lysosome markers Lamp1, M6Pr, and Rab7a were found in low‐density cellular fractions (LDFs), also enriched with Rab11a, flotillins, caveolin‐1, and several other SNARE family proteins involved in the targeting of and/or fusion of transport vesicles to their target membrane.
The amount of OX26 affinity variants internalized into SV‐ARBECs was inversely proportional to their affinity. Internalized medium affinity OX2676 and OX26108, along with the TfR, distributed predominantly into HDFs containing, among others, markers of early/recycling endosomes, whereas high‐affinity OX265 and low‐affinity OX26174, along with TfR, were both routed into LDFs, containing markers of late endosomes and lysosomes. OX26 affinity variants routed into HDFs showed an efficient release on the abluminal side of the rat BBB model in vitro; overall the transcytosis of variants across the BBB model in vitro correlated well with the proportion of antibodies sorted into early endosome fractions. A similar observation was reported by Bien‐Ly and colleagues (Bien‐Ly et al. 2014) with heterodimerized mouse‐specific TfR‐BACE1 bi‐specific antibodies; however, the affinity range of TfR antibody arm (KD‐250–600 nM) at which the BBB transcytosis was enhanced and intracellular traffic was routed through early endosomes was different from our study, likely because the antibodies were monovalent and were binding different TfR epitope(s) from those used in our study. The ‘window’ of binding affinities at which the bivalent OX26 antibodies preferentially trafficked to early/recycling endosomes and exhibited enhanced BBB transcytosis was relatively narrow (76‐108 nM) and lowering the affinity further (to 174 nM) resulted in small amount of internalized antibody being trafficked in a pattern similar to that of the high‐affinity (~5 nM) variant.
The molecular mechanisms that determine routing of the TfR/Ab complex into endosomal subcompartments are not fully understood. For example, based on molecular modeling, Niewoehner et al., (Niewoehner et al. 2014) argued that the bivalent TfR antibodies will cause cross‐linking of the TfR, triggering its trafficking to lysosomes where the complex is destined for degradation; in contrast, a monovalent TfR antibody, regardless of its affinity, will engage TfR without cross‐linking resulting in its efficient transcytosis across the BBB. A recent study (Villaseñor et al. 2016) implicated Rab17‐dependent sorting microtubules in directing monovalent TfR antibody toward successful transcytosis; the bivalent TfR antibody‐TfR clusters were excluded from sorting microtubules by slower diffusion and were targeted for degradation. This hypothesis did not take into account the presence of various forms of the TfR on the surface of cells, some of which are naturally dimerized; nor was a range of affinities tested in a monovalent format.
The extracellular domain of TfR is cleaved by membrane proteases to create a soluble monomeric TfR (sTfR) (Kaup et al. 2002), shed into serum as a free molecule or within exosomal particles (Ahn and Johnstone 1993). TfR has been detected previously in extracellular microvesicles generated by SV‐ARBEC (Haqqani et al. 2013b). Shedding of sTfR leaves a variety of membrane‐inserted forms of TfR including homodimer (~190kD depending on glycosylation pattern), homodimer with one extracellular domain (TfR:mfTfR; 110 kD), monomeric TfR (90 kD), as well as their respective 25kD and 13kD ‘headless’ fragments (Kaup et al. 2002). The prevalence of these forms in different cell types is variable; in rat BEC used for these studies, the monomeric TfR forms were dominant. It is likely that various fully or partially cleaved membrane TfR forms are also present in endothelial cells in vivo, since circulatory sTfR (reference values 1.8–4.6 mg/L) is used as diagnostic marker for iron status.
OX26 antibody variants will bind all membrane TfR forms that have intact (non‐cleaved) extracellular domain, and will likely trigger internalization regardless of whether they bind mono‐ or bivalent (homodimerized) TfR; however, their subsequent trafficking through intracellular compartments may be different. It is not clear whether the affinity of the binding antibody may determine preferential interactions with any specific form of TfR containing an extracellular domain. Since all TfR antibodies used in these studies were bivalent, they likely triggered some cross‐linking of various TfR forms expressing extracellular domain.
Studies by Bien‐Ly (Bien‐Ly et al. 2014) and Niewoehner (Niewoehner et al. 2014) both showed that TfR antibody formats that directed the complex to lysosmes may cause subsequent proteolytic degradation and down‐regulation of TfR in both BBB endothelial cells and brain tissue. Similarly, longer exposure to OX265, OX2676, and OX26108 in this study caused an observable trend of TfR down‐regulation, with the monomeric TfR in cells exposed to OX265 being significantly reduced. The data agree with measured proportion of TfR routed into LDFs by these variants. Although the high proportion of low‐affinity OX26174‐TfR complex was directed into late endosomes/lysosmes, the overall amount of internalized complex destined for degradation was low, and likely not sufficient to affect TfR levels over a 48 h exposure.
In a recent study, we have shown that lower affinity rat TfR antibody variants, OX2676 and OX26108, exhibited a 50‐fold enhanced brain exposure after systemic administration compared to a high‐affinity OX265. In addition, a pharmacodynamic response to the analgesic peptide cargo chemically conjugated to these OX26 affinity variants was significantly enhanced with OX2676 and OX26108, compared to OX265 (Thom et al. 2018). In vitro and the in vivo BBB transcytosis of the same OX26 affinity variants was in good agreement between this study and the in vivo study by Thom and co‐workers (Thom et al. 2018). The brain exposure of OX26 affinity variants in vivo was affected by both their serum pharmacokinetics and efficiency of transcytosis across the BBB (Thom et al. 2018). OX265 exhibited a short plasma half‐life (6.1 h), was also mostly ‘trapped’ in brain vessels and did not produce appreciable staining of TfR‐expressing neurons. In contrast, OX2676 and OX26108 showed prolonged serum pharmacokinetics (~50 h) and were detected in both brain vessels and bound to neurons in the brain parenchyma. This study provides further evidence that the improved brain exposure of OX2676 and OX26108 in vivo was influenced by a more efficient process of transcytosis whereby the antibody undergoes preferential sorting into endosomal compartments destined for exocytosis. Despite displaying long serum half‐life, OX26174 produced a minimal brain exposure (Thom et al. 2018) because of both suboptimal affinity for receptor engagement in vivo and antibody traffic to the degradative pathway shown in this study. Affinity modulation of bivalent TfR antibodies was sufficient to impact the efficiency of BBB transcytosis in both studies.
Recent demonstrations that the transport efficiency of TfR antibodies across the BBB can be improved by various antibody engineering techniques rekindled the interest in their development as potential delivery vehicles for therapeutics targeting the CNS. Because antibodies used in different studies were species‐specific and recognized different epitopes on the TfR, it was difficult to generalize key observations as universal principles useful for antibody engineering to improve their BBB transport. The common evidence from this study and other available literature suggest that efficient transcytosis across the BBB could be achieved by engineering key receptor‐mediated transport antibody attributes that support its preferential routing into early endosomes and away from degradative pathways in BEC. These key attributes are likely receptor‐ligand specific and may include antibody affinity, its ability to trigger conformational changes and endocytosis of the receptor, the receptor epitope and the manner in which it is engaged (e.g., monovalent, bi‐paratopic, etc.), the pH dependence of antibody binding and intracellular routing signals engineered into the antibody.
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Supporting information
Acknowledgments and conflict of interest disclosure
The authors thank Wen Ding, Alexandra Star, Xigeng Zhao, and Terri D'Souza for their help with sample preparation and mass spectrometry.
All experiments were conducted in compliance with the ARRIVE guidelines. All authors employed by MedImmune at the time of the work have a theoretical conflict of interest through being employed by the organisation that both funded the work and has a potential commercial interest in the findings.
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