Abstract
Apoptosis is an evolutionarily conserved form of programmed cell death critical for development and tissue homeostasis in animals. There are several positive feedback loops in the apoptotic control network, which could allow apoptosis to spread through the cytoplasm in self-regenerating trigger waves. We tested this possibility in cell-free Xenopus laevis egg extracts, and observed apoptotic trigger waves with speeds of ~30 μm/min. Fractionation and inhibitor studies implicated multiple feedback loops in generating the waves. Apoptotic oocytes and eggs exhibited surface waves with speeds of ~30 μm/min, which were tightly correlated with caspase activation. Thus apoptosis spreads through trigger waves in both extracts and intact cells. Our findings emphasize the importance of trigger waves in cell signaling, allowing diverse all-or-none decisions to propagate over large distances without decreasing in speed or amplitude.
One Sentence Summary:
Apoptosis propagates through cytoplasm as self-regenerating trigger waves, which spread without slowing down or petering out.
Xenopus laevis eggs are large cells, ~1.2 mm in diameter, that are naturally arrested in metaphase of meiosis II. The eggs ultimately adopt one of two fates: either they become fertilized and enter the embryonic cell cycle, or they fail to become fertilized and die, usually through apoptosis. Apoptosis is a relatively non-perturbing form of cell death, and may allow the frog to resorb old oocytes and to clean up any eggs retained in the frog’s body without provoking an inflammatory response (1). The powerful biochemical approaches provided by the Xenopus system have made Xenopus eggs and extracts useful model systems for the study of apoptosis (2, 3).
The unusual size of the Xenopus egg raises the question of how an all-or-none, global process like apoptosis spreads through the cell. One possibility is that apoptosis spreads through the egg by random walk diffusion, ultimately taking over all of the cytoplasm. A second possibility is suggested by the fact that the regulatory network that controls apoptosis contains multiple positive and double-negative feedback loops (Fig. 1A). These loops could allow apoptosis to propagate through self-regenerating trigger waves. Trigger waves are propagating fronts of chemical activity that maintain a constant speed and amplitude over large distances. They can arise when bistable biochemical reactions are subject to diffusion, or, more generally, when something akin to bistability (e.g bistability, excitability, or relaxation oscillations) is combined with a spatial coupling mechanism (e.g. diffusion or cell-cell communication) (4–6). Familiar examples include action potentials, calcium waves, and the spread of a fire through a field, a favorable allele through a population, or a meme through the internet. Trigger waves are an important general mechanism for long-range biological communication, and apoptotic trigger waves could allow death signals to spread rapidly, and without diminishing in amplitude, even through a cell as large as a frog egg.
To distinguish between diffusive spread and trigger waves in the propagation of apoptotic signals, we used undiluted cell-free extracts from Xenopus eggs (7). Such extracts can be placed in long (several millimeters) tubes and imaged by video microscopy (8, 9). Over millimeter distances, the distinction between diffusive spread of apoptosis, which would slow down with increasing distance, and trigger waves, which maintain a constant speed and amplitude, should be readily apparent.
We incubated one portion of a cycloheximide-treated interphase cytoplasmic extract with horse cytochrome c (2.4 μM) and verified that caspase-3 and/or caspase-7, executioner caspases (10) that share similar peptide sequence specificity, became activated (figure S1). A 10-kD Texas Red-conjugated dextran was added to the apoptotic extract as a diffusion marker, and the extract was pipetted into a large (560-μm inner diameter) Teflon reservoir. We then took a second portion of the interphase extract, with added sperm chromatin plus a chimeric protein consisting of glutathione-S-transferase, green fluorescent protein, and a nuclear localization sequence (GST-GFP-NLS) but no cytochrome c, and introduced it into a thin (150-μm inner diameter) Teflon tube. The nuclei act as an easily-assessed indicator of apoptosis: in non-apoptotic extracts, GST-GFP-NLS concentrates in the nuclei that form from the sperm chromatin, whereas in an apoptotic extract, caspases attack components of the nuclear pore (11) and allow the GST-GFP-NLS to leak out and disperse. The tube containing this naive extract was gently inserted a short distance into the reservoir containing the apoptotic extract, and the two tubes were placed under mineral oil (Fig. 1B). We used time-lapse fluorescence microscopy to determine whether apoptosis spread up the thin tube in a diffusive fashion, with propagation slowing as apoptosis proceeded, or at a constant velocity as expected for trigger waves.
As shown in movie S1 and Fig. 1, B and C, apoptosis progressed up the thin tube at a constant speed of 27 μm/min over a distance of several millimeters. In five independent experiments, apoptosis always propagated linearly, without showing any signs of slowing down or petering out, and the average speed was 29 ± 2 μm/min (mean ± S.D.). In contrast, the 10-kD dye spread only a few hundred microns (Fig. 1B), implying that neither simple diffusion nor any unintended mixing could account for the spread of apoptosis.
If the apoptotic signals are indeed propagated by trigger waves, one prediction is that the waves should be self-sustaining; that is, once the activity is established in the thin tube, continued contact with the reservoir of apoptotic extract would not be required. We tested this possibility by inserting the thin tube into the apoptotic reservoir for 20 min, and then removing it and monitoring apoptosis. The apoptotic activity propagated from the induction terminus to the distal terminus, at a constant speed of 32 μm/min, consistent with a self-sustaining process (figure S2). This procedure was used for all subsequent experiments, because it provided more reliable focusing for the imaging and allowed more tubes to be imaged per experiment.
A second way of detecting apoptosis is with the fluorogenic caspase substrate Z-Asp-Glu-Val-Asp-rhodamine 110 (Z-DEVD-R110) (12). This probe is a rhodamine derivative (R110) with two four-amino acid (DEVD) peptides linked to the fluorophore. It is non-fluorescent when the DEVD-fluorophore bonds are intact, but becomes strongly fluorescent once they are hydrolyzed by caspase-3 or −7. We added the probe (2 μM) to an extract and initiated apoptosis as before. Fluorescence spread up the tube at a constant speed (in this experiment, 33 μm/min). In eight experiments, the average speed was 30 ± 3 μm/min (mean ± S.D.) (movie S2, Fig. 1D). We also added sperm chromatin and GST-mCherry-NLS as well as Z-DEVD-R110 to compare the propagation of the caspase activity wave to the disappearance of the reconstituted nuclei. In this experiment, the disappearance of the nuclei lagged 40 min behind the front of Z-DEVD-R110 fluorescence (Fig. 1E); in four independent experiments the lag was 35 ± 5 min (mean ± S.D.). The speeds of the Z-DEVD-R110 and GST-mCherry-NLS waves—the slopes of the dashed white lines—were indistinguishable (Fig. 1E).
We sought to understand the mechanistic basis for the trigger waves. The apoptotic control system includes multiple positive feedback loops (Fig. 1A). One positive feedback circuit involves only cytosolic proteins, including caspases-3, −7, and −9, and XIAP (designated “caspase loop” in Fig. 1A). Another involves the system that regulates the Bak and Bax proteins (the “BH3 protein loop” in Fig. 1A), which, when activated, bring about mitochondrial outer membrane permeabilization (MOMP). One long loop, in which cytosolic cytochrome c stimulates caspase-3 and −7 activation and caspase activation stimulates cytochrome c release (the “MOMP/caspase/BH3 protein loop”) connects the two shorter loops (Fig. 1A). We tested whether the cytosolic components could support trigger waves in the absence of mitochondria, and whether the mitochondrial components could support trigger waves in the absence of the activation of caspase-3 and caspase-7.
We fractionated a crude cytoplasmic extract (2, 3) (figure S3A) and verified by immunoblotting that the resulting cytosol was largely devoid of mitochondria, as indicated by the absence of a mitochondrial marker protein, the voltage-dependent anion channel (VDAC) (figure S3B). Horse cytochrome c (2.4 μM) was added to this cytosolic fraction, and the activity of caspase-3 and/or −7 was assessed by the chromogenic caspase assay. In agreement with previous reports (3, 13), the caspases were briskly activated (Fig. 2A). Thus mitochondria are not essential for cytochrome c-induced activation of executioner caspases in Xenopus extracts.
We tested whether the cytosolic extract could support apoptotic trigger waves. Because nuclei cannot be reconstituted in cytosolic extracts, we used the fluorogenic Z-DEVD-R110 probe for this experiment. The fluorescence spread up the tube in a sub-linear fashion (movie S3, Fig. 2E). To see if this spread was consistent with simple random walk diffusion, we identified points along the propagation front with equal fluorescence intensity (figure S4A and B) and plotted distance squared (x2) vs. time (figure S4C). The x2 vs. t relationship was linear for at least an hour (figure S4C), consistent with random walk diffusion. Thus, over this time scale and distance scale, there was no evidence for a trigger wave.
To further test the role of the mitochondria, we added back purified mitochondria to the cytosolic extract at a 3% volume to volume (v/v) ratio, which is approximately physiological [estimated from the volumes we obtained for the various fractions (see figure S3) and the concentrations used by others in reconstitution studies (3)], and again determined whether apoptosis would propagate diffusively or as a trigger wave. As expected, the reconstituted extract activated caspase-3 in response to horse cytochrome c (Fig. 2C). Moreover, the reconstitution restored the trigger waves (movie S3 and Fig. 2D). The propagation distance increased linearly with time (Fig. 2D), as it did in crude cytoplasmic extracts (Fig. 1), and had a constant speed of 39 μm/min, somewhat faster than that observed in cytoplasmic extracts. The signal propagated over a long distance (6000 μm) with little loss of amplitude and no loss of speed (Fig. 2D).
Over a distance scale of a millimeter or so it is easy to distinguish a ~30 μm/min trigger wave from diffusive spread of even a rapidly-diffusing small molecule like R110. However, by the end of the experiment shown in Fig. 1B, the speed of the caspase-3 wave had fallen only to ~15 μm/min; a trigger wave any slower than that would be outpaced by diffusion over the same distance. Thus to determine whether trigger waves were abolished or only slowed in cytosolic extracts, we made use of longer tubes (up to 3 cm) and longer time courses (up to 24 h). Display of R110 fluorescence on a pseudocolor heat map scale to made it easier to distinguish the wave front at both early times and late times (Fig. 2E). As was the case in Fig. 2B, the speed of the wave front fell during the first ~120 min, consistent with diffusive propagation, but once the speed reached ~14 μm/min it remained constant for many hours (Fig. 2E). This suggests that purified cytosol is capable of generating apoptotic trigger waves, albeit with a substantially slower speed than that seen in cytoplasm or in cytosol supplemented with mitochondria.
Trigger wave speeds were measured in eight independent experiments using various concentrations of mitochondria (Fig. 2F). From curve fitting, the trigger wave speed was half maximal at a mitochondrial concentration of 1.3 ± 0.6% (mean ± S.E.), which is estimated to be ~40% of the physiological mitochondrial concentration in Xenopus eggs. Thus an average concentration of mitochondria is sufficient to generate apoptotic trigger waves of near-maximal speed, and the wave speed would be expected to drop in mitochondrion-poor regions of the cytoplasm.
Apoptosis almost always initiated first at the end of the tube that was dipped in the apoptotic extract (Figs. 1 and 2 and figure S2). However, in experiments with either cytoplasmic extracts or reconstituted extracts, more than half of the time (12/22 and 21/37 tubes, respectively) a second spontaneous apoptotic wave emerged elsewhere in the tube (movie S4 and figure S5A). The velocities of the induced and spontaneous trigger waves were indistinguishable (44 μm/min in the example shown in figure S5A), indicating that they probably represent the same basic phenomenon. Usually the entire tube of extract became apoptotic, as assessed by the Z-DEVD-R110 probe, after 2 hours of incubation (figure S5) and invariably by 4 hours. This global activation of caspase-3 and −7 did not occur in cytosolic extracts (which allowed the extended time course experiment shown in Fig. 2E).
The fact that the wave speed depends upon the concentration of mitochondria implies that the BH3-domain proteins that regulate MOMP may function in generating the trigger waves (Fig. 1A). To further test this possibility, we added recombinant GST-Bcl-2 protein to cytoplasmic extracts to see whether trigger waves were affected. Bcl-2 is a stoichiometric inhibitor of the pro-apoptotic tBid protein and of the pore-forming Bak and Bax proteins, and so the expectation was that GST-Bcl-2 would slow the trigger waves. Adding GST-Bcl-2 decreased the wave speed (Fig. 3A and B, movie S5). The maximum effect [at 400 nM added GST-Bcl-2, which compares to the estimated endogenous Bcl-2 concentration of approximately 140 nM (14)] was a reduction of the speed to about 13 μm/min, the speed seen in purified cytosol. Added GST-Bcl-2 had no effect on the trigger wave speed in cytosolic extracts (Fig. 3C and D), which emphasizes that the waves seen in purified cytosol are probably not caused by contaminating mitochondria. GST-Bcl-2 decreased the trigger wave speed in reconstituted (cytosol + mitochondria) extracts (Fig. 3E and F), just as it did in cytoplasmic extracts.
If the MOMP-caspase-BH3 protein loop contributed to the generation of trigger waves, inhibition of the executioner caspases would be expected to slow or block the waves (Fig. 1A). To test this, we added caspase-3 and −7 inhibitor N-acetyl-Asp-Glu-Val-Asp-aldehyde (Ac-DEVD-CHO) to the reconstituted extracts. Because high concentrations of the inhibitor make it difficult to follow trigger waves with the fluorogenic caspase substrate Z-DEVD-R110, we used an additional probe, tetramethylrhodamine ethyl ester (TMRE), a red fluorescent dye that responds to changes in mitochondrial membrane potential. Non-apoptotic mitochondria accumulate TMRE in their matrices. During apoptosis, the matrix loses TMRE at approximately the time of cytochrome c release (15, 16), even in the presence of caspase inhibitors (17). We tested TMRE as a reporter of trigger waves by adding 50 nM TMRE to a reconstituted extract together with Z-DEVD-R110, and looked for evidence of trigger waves in both fluorescence channels. A wave of TMRE loss (and therefore depolarization of mitochondria) could be detected (Figs. 3G and H). The TMRE wave propagated at the same speed as the caspase trigger wave reported by Z-DEVD-R110 in the same tube (38 μm/min).
We tested whether trigger waves still occurred when caspases-3 and −7 were inhibited. When relatively low concentrations of the caspase inhibitor Ac-DEVD-CHO (≤ 1 μM) were used, there was sufficient residual caspase-3 and/or −7 activity to allow both the Z-DEVD-R110 and TMRE reporters to yield data on trigger wave speed. As shown in Fig. 3I-L, figure S6 and movie S7, Both reporters showed that the wave speed decreased as the inhibitor concentration increased (Fig. 3I through L, figure S6 and movie S7). In the presence of Ac-DEVD-CHO there was a transient increase in TMRE fluorescence at the front of the apoptotic wave, which may result from fluorescence dequenching or transient hyperpolarization, and which made the TMRE waves easier to discern (Fig. 3J and movies S6 and S7). At higher concentrations of Ac-DEVD-CHO, the wave speed could be read out only with the TMRE reporter, and it leveled off at ~15 μm/min (Fig. 3L).
These experiments implicate caspase-3 and/or −7 as well as Bcl-2 in the regulation of the apoptotic trigger waves. The experiments also show that the trigger waves are relatively robust; they are still present, though with reduced speeds, in extracts depleted of mitochondria or treated with maximal doses of GST-Bcl-2 or Ac-DEVD-CHO. However, addition of Ac-DEVD-CHO to cytosolic extracts did completely eliminate trigger waves (figure S7). Thus the cytosolic caspase feedback loop (Fig. 1A) appears to mediate the (slow) apoptotic trigger waves seen in purified cytosolic extracts (Fig. 2E and3C).
To determine whether apoptotic trigger waves occur in intact oocytes and eggs, we imaged oocytes incubated with TMRE or Z-DEVD-R110 and looked for evidence of a wave of fluorescence. However, the opacity of the cells made it difficult to obtain satisfactory imaging data. Nevertheless, we noticed that when oocytes were injected with cytochrome c, a wave of changes in the oocyte’s natural pigmentation systematically spread from the site of injection to the opposite pole. One particularly striking example of such a wave is shown in montage form in Fig. 4A, as a kymograph in Fig. 4B, and in video form in movie S8; two more subtle examples are shown in movie S9. The surface waves propagated at an apparent speed of ~30 μm/min, similar to the wave speeds seen in apoptotic extracts. Control oocytes injected with Texas Red-dextran in water did not exhibit these surface waves. These findings indicate that apoptotic trigger waves can be produced in oocytes.
To test whether eggs might naturally exhibit a similar surface wave at the end of their lifetimes, we incubated eggs with egg-laying buffer at room temperature, conditions that typically lead to apoptosis by 12 to 24 hours. During this same time period, a surface wave often appeared, originating near the vegetal pole and propagating toward the animal pole, with a typical apparent speed of ~30 μm/min (Fig. 4, C and D and movie S10). This wave was followed by further pigment changes over the next several hours—expansion and then contraction of a white dot at the animal pole (figure S8).
To see whether the surface wave correlated with caspase activation, we harvested and lysed individual eggs just after they underwent such a wave. Every egg that showed a wave had increased caspase activity (Fig. 4, E and F, red points). We also collected eggs during the same time period that had not displayed a wave. None of these eggs had increased caspase activity (Fig. 4, E and F, blue points). These findings support the idea that spontaneous apoptosis typically initiates near the vegetal pole of the egg, and propagates outward and upward from there as a ~30 μm/min trigger wave.
Our results indicate that apoptosis propagates through cytoplasmic Xenopus laevis extracts via trigger waves (Fig. 1). The speed of the apoptotic trigger waves depends upon the concentration of mitochondria, although both cytosolic extracts and GST-Bcl-2-treated cytoplasmic extracts can support slower (~13 μm/min) waves (Figs. 2, 3). Inhibiting caspase-3 and caspase-7 also slowed but did not abolish the waves. These findings show that the phenomenon is highly robust and must involve multiple interlinked bistable systems. We also found evidence for apoptotic waves in cytochrome c-injected oocytes and in spontaneously dying eggs, demonstrating that the trigger waves are not an artifact of the extract system.
Imaging studies on mammalian cell lines (18–20), cardiac myotubes (21, 22), and syncytial human trophoblasts (23) have shown that apoptosis typically initiates at a single discrete focus, or a small number of discrete foci, and then spreads rapidly throughout the cell, and in some of these studies the propagation velocities appear to be constant over distances of ~100 μm (18, 19, 21, 22). Although it can be difficult to distinguish between trigger waves and diffusive spread over such short distances, particularly in cells with irregular geometries and inhomogeneous cytoplasm, it seems likely that apoptotic trigger waves occur in many cell types.
There is a close analogy between the mechanisms underpinning the apoptotic trigger waves observed here and calcium waves. The former involves cytochrome c-induced release of cytochrome c and other apoptotic mediators from the mitochondria, while the latter involves calcium-induced calcium release from the endoplasmic reticulum. The particular proteins involved, storage organelles, and time scales for the two types of trigger waves are all different, but the basic logic is the same.
The ingredients needed for generating a trigger wave are simple; they include a spatial coupling mechanism (like diffusion or intercellular communication) and positive feedback (6). Positive feedback is commonplace in signal transduction, from cell fate induction to biological oscillations to prion formation. And whenever positive feedback is present, there is a possibility of trigger waves, allowing signals to propagate quickly over large distances without diminishing in strength or speed. We suspect there may be many other examples of trigger waves in intra- and intercellular communication.
Supplementary Material
Acknowledgments:
We thank James Chen’s and Dan Jarosz’s labs for sharing their microscopes, Hiro Funabiki and Mary Dasso for providing the GST-GFP-NLS construct, and Julia Kamenz and the rest of the Ferrell lab for helpful discussions and comments on the manuscript.
Funding: This work was supported by grants from the National Institutes of Health (R01 GM110564 and P50 GM107615).
Footnotes
Supplemental Materials
Materials and Methods
Figures S1-S9
Movies S1-S10
Competing interests:None declared.
Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper or the Supplementary Materials.
References and Notes:
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