Knock-down the expression of TaH2B-7D using virus-induced gene silencing reduces wheat drought tolerance

Abstract

Background

Drought is a major abiotic stress affecting global wheat (Triticum aestivum L.) production. Exploration of drought-tolerant genes is essential for the genetic improvement of drought tolerance in wheat. Previous studies have shown that some histone encoding genes are involved in plant drought tolerance. However, whether the H2B family genes are involved in drought stress response remains unclear.

Methods

Here, we identified a wheat histone H2B family gene, TaH2B-7D, which was significantly up-regulated under drought stress conditions. Virus-induced gene silencing (VIGS) technology was used to further verify the function of TaH2B-7D in wheat drought tolerance. The phenotypic and physiological changes were examined in the TaH2B-7D knock-down plants.

Results

In the TaH2B-7D knock-down plants, relative electrolyte leakage rate and malonaldehyde (MDA) content significantly increased, while relative water content (RWC) and proline content significantly decreased compared with those in the non-knocked-down plants under drought stress conditions. TaH2B-7D knock-down plants exhibited severe sagging, wilting and dwarf phenotypes under drought stress conditions, but not in the non-knocked-down plants, suggesting that the former were more sensitive to drought stress.

Conclusion

These results indicate that TaH2B-7D potentially plays a vital role in conferring drought tolerance in wheat.

Background

Drought stress is the principal abiotic factor limiting wheat (Triticum aestivum L.) productivity in arid and semi-arid areas [1]. More than 50% of the wheat growing areas in the world are impacted by drought stress [2]. A large number of studies have been carried out on the physiological changes of wheat plants under drought stress and their molecular mechanisms in response to drought stress [3–10]. However, although significant progress has been made [11, 12], the mechanisms of drought tolerance in hexaploid wheat have not been fully explored. Further exploration of drought-tolerant genes is of vital importance for the genetic improvement of wheat drought tolerance.

Studies have shown that the histones are involved in multiple stress responses in plants. Histone proteins contain large amounts of basic amino acids such as arginine and lysine, which are up to about 1/4 of all amino acid residues. The histones proteins bind to the negatively charged double helix DNA to form a chromatin complex [13, 14]. According to the composition of amino acid and molecular weight, histones can be divided into five major families: H₁, H₂A, H₂B, H₃, H₄ [15, 16]. Altering the activity or level of histone variants has been demonstrated to be associated with abiotic stress responses [17]. Epigenetic modifications of histone proteins such as deacetylation [18], methylation [19, 20] and ubiquitination [21] are involved in plant drought response. Moreover, knock-down the drought-inducible H1-S variant of tomato by antisense technology promotes stomatal closure and enhances drought tolerance [17]. The H2A.Z variant of Arabidopsis is involved in the response to phosphate deficiency [22] as well as in the perception of ambient temperature [23]. Overexpression one of the TaH2A variant TaH2A.7 in Arabidopsis significantly lowered water loss rate, and promoted ABA-induced stomatal closure and enhanced drought tolerance in Arabidopsis [24]. Histone H2B is one of the four main histone proteins involved in the structure formation of nucleosomes of chromatin in eukaryotic cells [25]. However, whether H2B proteins are involve in the drought stress response is unclear.

Virus-induced gene silencing (VIGS) is an efficient post-transcriptional gene silencing (PTGS)-based technique for gene functional study [26]. It employs the natural defense mechanisms used by plants to protect against invading viruses [27]. Viruses that do not have or have only weak gene silencing suppressors are modified to VIGS systems to induce PTGS-mediated degradation of target plant mRNAs [28–30]. So far, several VIGS systems have been established for monocots [30, 31]. Barley stripe mosaic virus (BSMV) is a tripartite RNA virus that can infect many agronomical important crops like barley, wheat, rice, maize and oat, and the BSMV-derived VIGS system has been widely used among monocots [32]. Similarly, Brome mosaic virus (BMV) is another RNA virus that has been adopted for VIGS in barley, rice, and maize [33]. The VIGS system developed from the Rice tungro bacilliform virus (RTBV) is a convenient and efficient method using agroinoculation, which can reduce the expression levels of target genes by more than 90%. In important horticultural specie orchids, a VIGS vector system has also been successful established employing the symptom free Cymbidium mosaic virus (CymMV) [30, 33]. In this study, we identified a drought-responsive histone H2B family gene on chromosome 7D, TaH2B-7D, which was significantly up-regulated under drought stress conditions. As the BSMV-derived VIGS system has been widely used for identification of stress responsive genes in hexaploid wheat [34–38], it was used here to further investigate the function of the drought responsive gene TaH2B-7D. The phenotypic and physiological changes were examined in the VIGS-based TaH2B-7D gene knock-down plants. Our results demonstrate that relative electrolyte leakage rate and malonaldehyde (MDA) content significantly increased, while the relative water content (RWC) and proline content significantly decreased in the TaH2B-7D knock-down plants under drought stress conditions. Moreover, the TaH2B-7D knock-down plants were more sensitive to drought stress. This work shows that TaH2B-7D potentially plays a vital role in conferring drought tolerance in common wheat.

Methods

Plant material and growth conditions

An elite drought-tolerant wheat variety in China, XN979, was used for in vitro transcribed RNA inoculation in the VIGS trial [39]. Pot culture was employed in the trial. Firstly, seeds were germinated for 16 h at 22 °C; then, twelve germinated seeds were sown in each pot with a soil water content of 90% field capacity (FC). The incubator temperature was set at 21 ± 1 °C in the daytime and 19 ± 1 °C at night (15 h light/9 h dark). Wheat plants were thinned to nine plants per pot after emergence. Sixteen days after sowing, wheat seedling plants (Zadoks growth scale 12) were used for in vitro transcribed RNA inoculation in the VIGS trial. The procedure for vector construction and in vitro transcribed RNA inoculation will be described in detail later. After the inoculation, the pots were divided into two groups and the following two treatments were performed separately: (1) non-stress conditions (NS, maintained the soil water content at 80–90% FC), and (2) drought stress conditions (DS, no watering after sowing). Sixteen days after the inoculation (about 44% FC under DS conditions), the leaves of each pot were collected for measurement of proline and MDA content, RWC and rate of relative electrolyte leakage. In the meanwhile, another trial comprising low nitrogen treatment (LN), salt stress treatment (SS) and non-stressed control were carried out according to previous literatures [40, 41].

Vector construction and in vitro transcribed RNA inoculation

Vectors for VIGS trial were constructed as previously described [42]. Firstly, a 135 bp-fragment of TaH2B-7D cDNA coding region was cloned and then inserted into the γ vector (forward primer containing the Pac I restriction site and two protective bases (CC) at 5 prime end: 5′CCTTAATTAAGACAAGAAGAAGAAGAAGGC3′; reverse primer containing the Not I restriction site and three protective bases (TAT) at 5 prime end: 5′TATGCGGCCGCGTCGTTGATGAAGGAGTTC3′). The BSMV₀ derived from the original empty pSL038-1 vector and acted as a negative control. BSMV_PDS was used as a positive control to monitor the time course of VIGS [35, 39]. Then, the constructs were linearized and used to synthesize α, β, γ RNAs of the BSMV genome using Ribo MAX TM Large Scale RNA Production System-T7 (Promega, Madison) [43]. The α, β, γ RNAs were mixed in equal amounts and diluted with an equal volume of RNAase-free water and added to FES buffer [34]. Each of the constructs consisted of BSMV α, β, and γ with the TaH2B-7D gene fragment (BSMV_TaH2B-7D) or phytoene desaturase (GenBank: FJ517553.1, BSMV_PDS) or null insertion (BSMV₀). The inoculation of each viral construct was performed according to previously described procedures [35]. The incubator temperature was set at 23 ± 1 °C, with darkness for 24 h, followed by a 15 h light/9 h dark photoperiod [39].

Real-time PCR analysis

Leaf total RNA was extracted using Trizol reagent according to the product instructions (Trizol; Invitrogen). Two-Step Prime-Script™ RT reagent Kit with gDNA Eraser (Perfect Real Time; TaKaRa) was used for the cDNA synthesis. The temperature procedure was set as follows: 2 min at 42 °C, 15 min at 37 °C, 5 s at 85 °C, and then 4 °C. The primers used for real-time PCR were designed using Primer 5.0 software (forward primer: 5′GACAAGAAGAAGAAGAAGGC3′; reverse primer: 5′GTCGTTGATGAAGGAGTTC3′). Real-time PCR was performed on a Bio-Rad IQ5 Real-Time PCR Detection System. Each reaction contained 0.4 μmol of forward and reverse primers respectively, 12.5 μl of SYBR Premix Ex Taq (Tli RNaseH Plus), 4 μl diluted cDNA templates. The reaction volume was added to 25 μl with nuclease-free water. The temperature procedure was set as follows: 95 °C for 5 min followed by 40 cycles of 95 °C for 15 s, 60 °C for 15 s, and 72 °C for 15 s. The internal reference gene TaActin (forward primer: 5′ ACCTTCAGTTGCCCAGCAAT 3′; reverse primer: 5′ CAGAGTCGAGCACAATACCAGTTG 3′) and TaGAPDH (forward primer: 5′ TGTCTGTGGTGTCAATGAGAAGGA 3′; reverse primer: 5′ GCAAGAGGAGCAAGGCAGTTAGT 3′) were used to normalize the expression level of TaH2B-7D. Three biological replicates were performed. Relative gene expression levels of TaH2B-7D were calculated using 2^−∆∆CT method.

Measurement of physiological indices

The RWC was measured according to Flexas et al with minor modifications [44]. In brief, fresh leaves were sampled and weighted for fresh weight (FW). Then, the leaves were floated on deionized water for several hours until constant weight to determine their turgid weight (TW). Dry weight (DW) was determined by drying the fully turgid leaves in an oven at 80 °C for several hours until constant weight. The RWC was calculated by using the following formula: RWC (%) = [(FW − DW)/(TW − DW)] × 100. Three independent biological replicates were performed for each measurement.

Electrolyte leakage was measured as described by Yan et al. [45]. Fresh leaves were cut into 10 cm segments and washed three times with ultrapure water. The segments were incubated in a tube containing 10 ml of ultrapure water at room temperature for 24 h. Then, conductivity (C 1) was recorded using a conductivity meter (DDS-307A, China). Subsequently, the tubes were incubated at 100 °C for 20 min. After the solution was cooled to room temperature, conductivity (C 2) was recorded again. Electrolyte leakage was calculated by using the following formula: Electrolyte leakage (%) = C 1/C 2 × 100.

Proline was extracted and determined according to the method of Bates et al. with minor modifications [46]. Firstly, 0.5 g fresh leaves were homogenized in 5 ml 3% (w/v) aqueous sulfosalicylic acid. After centrifuged at 3000×g for 15 min at 4 °C, the supernatant was treated with equal volume of acid ninhydrin and glacial acetic acid, and boiled at 100 °C for 20 min, then placed on ice for 10 min. The absorbance of reaction mixture was recorded at 520 nm. Proline content was determined by a standard curve and calculated based on fresh weight (μg g FW⁻¹).

MDA content was measured according to the method of Hodges et al. with minor modifications [47]. In brief, 0.5 g fresh leaves were sampled and fast-frozen in liquid nitrogen. Then the samples were fully grinded using a tissue grinder. 5 ml of 5% (w/v) trichloroacetic acid (TCA) was added to each sample and mixed thoroughly. The mixture was centrifuged at 4 °C, 4000×g for 20 min, and 1 ml of supernatant was transfer to equal volume of 0.5% (v/v) TBA in 20% TCA. The mixture was boiled at 100 °C for 30 min, and then placed on ice for 30 min. After centrifuged at 4000×g for 10 min at 4 °C, the absorbance of 2 ml supernatant was recorded at 450 nm, 532 nm and 600 nm, respectively. MDA content was calculated by using the following formula: MDA content (μmol g FW⁻¹) = (6.45 (OD₅₃₂− OD₆₀₀) − 0.56 OD₄₅₀) × V/W. In the formula, V represents the volume of extracts (5 ml) and W represents the fresh weight of sample (0.5 g).

Results

The expression of TaH2B-7D under NS and DS conditions

Firstly, we examined the expression of TaH2B-7D under non-stress (NS) and drought stress (DS) conditions. Result shows that the expression of TaH2B-7D in XN979 was significantly up-regulated by drought stress (Fig. 1a, b). Since previous studies have shown that histones are involved in multiple stress responses, we examined the expression of TaH2B-7D under low nitrogen and salt stress conditions. Results show that TaH2B-7D was also significantly up-regulated by low nitrogen stress and salt stress (Fig. 1c–f). To check the effect of VIGS in our study, the expression level of TaH2B-7D was investigated in four independent BSMV_TaH2B-7D-infected plants (BSMV_TaH2B-7D-1, BSMV_TaH2B-7D-2, BSMV_TaH2B-7D-3 and BSMV_TaH2B-7D-4) and controls. Results show that the expression of TaH2B-7D were significantly down-regulated in the BSMV_TaH2B-7D-infected plants compared with that in the non-infected and BSMV₀-infected plants (negative control) under DS conditions (Fig. 2), indicating that the expression levels of TaH2B-7D have been successfully knocked-down in the BSMV_TaH2B-7D-infected individuals.

Fig. 1.

Relative expression level of TaH2B-7D under drought stress, low nitrogen and salt stress conditions. a, b drought stress; c, d low nitrogen stress; e, f salt stress. a, c, e Real-time PCR analysis of TaH2B-7D using TaActin as reference gene. b, d, f Real-time PCR analysis of TaH2B-7D using TaActin as reference gene. NS non-stress; DS drought stress; LN low nitrogen; SS salt stress. Each bar shows the mean ± standard errors (SE). Double asterisk indicate significant differences at P ≤ 0.01 levels

Fig. 2.

Detection of the expression levels of TaH2B-7D in the gene knock-down and control plants. NS, non-stress; DS, drought stress. BSMV₀, negative control of the VIGS system; BSMV_TaH2B-7D, TaH2B-7D-knock down plants; BSMV_TaH2B-7D-1, BSMV_TaH2B-7D-2, BSMV_TaH2B-7D-3 and BSMV_TaH2B-7D-4 are four independent TaH2B-7D-knock down plants. The expression level of TaH2B-7D in the TaH2B-7D-knock down plants was detected under DS conditions. Different letters above the columns indicate significant differences at P ≤ 0.01 levels

Phenotypic changes in the TaH2B-7D knock-down plants

In the VIGS trial, 10 days after inoculation, all the BSMV constructs-infected plants exhibited slight chlorosis owing to the plant immunity to virus. The BSMV_PDS-infected plants emerged visible bleached leaves (Fig. 3a), indicating the success of the viral inoculation [39]. Twenty days after inoculation, there were no obvious phenotypic changes of BSMV_TaH2B-7D-infected plants under NS conditions compared with the non-infected and BSMV₀-infected plants (Fig. 3b). However, severe leave sagging, wilting and slow growth (dwarf) were presented in the BSMV_TaH2B-7D-infected plants under DS conditions (Fig. 3c).

Fig. 3.

The phenotypes of TaH2B-7D-knock down plants. a Leaf; b, c whole plants; b non-stress treatment (NS); c drought stress treatment (DS). BSMV₀ represents the negative control of VIGS system; BSMV_PDS represents the positive control monitoring time course of VIGS; BSMV_TaH2B-7D represents TaH2B-7D-knock down plants

Physiological changes of the TaH2B-7D knock-down plants

We also checked physiological changes in the TaH2B-7D knock-down plants. Under DS conditions, leaf RWC in the non-infected plants and BSMV₀-infected plants only decreased by 16.4% and 14.5%, respectively, compared with that in the NS non-infected plants. However, leaf RWC in the BSMV_TaH2B-7D-infected plants under DS conditions reduced by 67.0% compared with that in the NS non-infected plants (Fig. 4a). At the same time, relative electrolyte leakage rate in the BSMV_TaH2B-7D-infected plants increased by 446.2% under DS conditions compared with that in the NS non-infected plants, which was significantly higher than that in the non-infected (173.5%) and BSMV₀-infected (159.6%) plants under DS conditions (Fig. 4b). Moreover, MDA content in the BSMV_TaH2B-7D-infected plants increased by 410.4% under DS conditions compared with that in the NS non-infected plants, which was also significantly higher than that in the non-infected and BSMV₀-infected individuals (negative controls) under DS conditions (Fig. 4c). In addition, proline content of the BSMV_TaH2B-7D-infected plants under DS conditions increased by 93% compared with that in the NS non-infected plants, which is obvious lower than was the case in both non-infected (211.8%) and BSMV₀-infected (196.9%) individuals (Fig. 4d).

Fig. 4.

The changes in the physiological indices of the TaH2B-7D-knock-down plants. a Relative water content; b rate of relative electrolyte leakage; c MDA content; d proline content. NS, non-stressed plants; DS, drought-stressed plants; BSMV₀, negative control of the VIGS system; BSMV_TaH2B-7D, TaH2B-7D-knock-down plants. Each bar shows the mean ± standard errors (SE) for three biological replicates

Discussion

Plants inevitably come across complicated environmental changes during their life cycle. Drought is one of the major limiting factors for plant growth and productivity [48, 49]. Identification of drought tolerance-related genes is very important for the genetic improvement of plant drought tolerance. Currently, many drought-responsive genes/proteins have been identified in different species such as wheat, maize, rice, peanut and soybean in previous studies [50–55]. These results are of great significance for exploring the molecular mechanisms and genetic improvement of wheat drought tolerance [56, 57]. However, most of these genes/proteins have not been functionally verified, especially in hexaploid wheat. Gene functional verification by genetic transformation in wheat is time-consuming and high-cost. Verification the functions of the large number of drought responsive genes/proteins is a big challenge in hexaploid wheat. VIGS technology is an alternative approach for preliminary functional analysis of these genes/proteins because of its rapidity and high efficiency [34–38]. In this study, VIGS was used to further analysis the function of a drought stress up-regulated histone H2B family gene, TaH2B-7D.

Histone proteins have been proved to be involved in multiple stress response [17]. For example, some histone protein variants are involved in the response to low phosphate and drought stress response, and temperature perception [17, 22, 23]. Moreover, deacetylation, methylation and ubiquitination of histone proteins are also involved in plant drought response [18–21]. A recent study showed that overexpression Arabidopsis AtHUB2 gene in cotton increases the global H2B monoubiquitination (H2Bub1) level through a direct interaction with GhH2B1 and up-regulates the expression of drought-related genes in transgenic cotton plants [21]. Coincidentally, the expression level of TaH2B-7D was also up-regulated by drought stress in wheat (Fig. 1a, b). The evidences indicate that H2B proteins may play a role in plant drought stress response. Since the expression of TaH2B-7D was significantly up-regulated by DS (Figs. 1, 2), VIGS as a post-transcriptional gene silencing technology, is suitable for the functional study of this gene In the VIGS trial, we observed a significant decrease of TaH2B-7D expression level in all the four independent BSMV_TaH2B-7D-infected lines, indicating that the expression level of TaH2B-7D was efficiently knocked-down (Fig. 2). Conventionally, the degree of leaf drooping is less, and leaves can maintain a relatively higher RWC in drought-tolerance plants than drought-sensitive individuals under DS conditions [58, 59]. Thus, the RWC of plant leaves can be used to at least partially assess the drought tolerance of a plant. In the TaH2B-7D knocked-down plants, leaf RWC significantly decreased compared with that in the negative control (BSMV₀-infected plants) under DS conditions (Fig. 4a). This result indicates that TaH2B-7D knock-down plants are more sensitive to drought stress. MDA content is an important marker of structural damage of the membrane [60]. Previous studies have shown that when plants are subjected to severe drought stress, the membrane is easily broken, membrane proteins are damaged, and the relative conductivity and MDA are significantly increased [61, 62]. In this study, the relative electrolyte leakage rate and MDA content in the TaH2B-7D knocked-down plants were both significantly higher than those in the non-infected and BSMV₀-infected plants under DS conditions (Fig. 4b, c). Moreover, compared with the NS plants, the increased ratio of proline content in the BSMV_TaH2B-7D-infected plants was significantly lower than that in the non-infected control and BSMV₀-infected plants under DS conditions. Proline is an important osmoregulatory substance that exists in plant cells. Previous studies have shown that the accumulation of proline favors osmotic adjustment and cell membrane stabilization under DS conditions [63, 64]. Taken together, these physiological results further confirm that TaH2B-7D knock-down plants are more sensitive to drought stress, indicating that TaH2B-7D potentially plays a vital role in conferring drought tolerance in hexaploid wheat.

In this study, we did not find any significant phenotypic change of TaH2B-7D knock-down plants under NS conditions. This result is beyond our previous expectation. After all, histones are essential components of chromatin. However, we had repeated this experiment two more times and got similar results. One possible reason to explain this result is that different members of H2B family genes may have a more meticulous functional differentiation. Some of them are essential components of chromatin under normal growth conditions, while others may play roles when plants encounter various environmental stresses. Interestingly, the expression level of TaH2B-7D was up-regulated not only by drought stress, but also by low nitrogen and salt stresses (Fig. 1). These results indicate that TaH2B-7D may play important roles in responding to multiple abiotic stresses. In this study, although the gene-specific primers of TaH2B-7D were designed and the sequence of the inserted cDNA fragment was confirmed by Sanger sequence when constructing the VIGS vectors, the possibility of knocking down some homologous genes of TaH2B-7D could not be completely ruled out. Therefore, further studies are needed to generate transgenic lines that overexpress and/or underexpress TaH2B-7D to better understand the function of this gene.

Conclusion

Knock-down the expression level of TaH2B-7D in wheat plants significantly increased leaf relative electrolyte leakage rate and MDA content, decreased leaf RWC and proline accumulation, and reduced wheat drought tolerance. Therefore, TaH2B-7D potentially plays a vital role in conferring drought tolerance in hexaploid wheat.

Abbreviations

VIGS

virus-induced gene silencing

MDA

malonaldehyde

RWC

relative water content

DS

drought stress

NS

no stress

FC

field capacity

PTGS

post-transcriptional gene silencing

BSMV

barley stripe mosaic virus

BMV

brome mosaic virus

RTBV

rice tungro bacilliform virus

CymMV

cymbidium mosaic virus

LN

low nitrogen

SS

salt stress