Abstract
Increased glucose uptake and aerobic glycolysis are striking features of many cancers. These features have led to many techniques for screening and diagnosis, but many are expensive, less feasible or have harmful side-effects. Here, we report a sensitive 1H/2H NMR method to measure the kinetics of lactate isotopomer and HDO production using a deuterated tracer. To test this hypothesis, HUH-7 hepatocellular carcinoma and AML12 normal hepatocytes were incubated with [2H7]glucose. 1H/2H NMR data were recorded for cell media as a function of incubation time. The efflux rate of lactate-CH3, lactate-CH2D and lactate-CHD2 was calculated as 0.0033, 0.0071, and 0.0.012 µmol/106cells/min respectively. Differential production of lactate isotopomers was due to deuterium loss during glycolysis. Glucose uptake and HDO production by HUH-7 cells showed a strong correlation, indicating that monitoring the HDO production could be a diagnostic feature in cancers. Deuterium mass balance of [2H7]glucose uptake to 2H-lactate and HDO production is quantitatively matched, suggesting increasing HDO signal could be used to diagnose Warburg (cancer) metabolism. Measuring the kinetics of lactate isotopomer and HDO production by 1H and 2H MR respectively are highly sensitive. Increased T1 of 2H-lactate isotopomers indicates inversion/saturation recovery methods may be a simple means of generating metabolism-based contrast.
Subject terms: Metabolomics, Cancer imaging, Cancer metabolism
Introduction
Central carbon metabolism plays an important role in the origin or progression of many diseases, including cancers, neurodegenerative diseases, diabetes, and nonalcoholic fatty liver disease (NAFLD)1–3. Metabolic reprogramming is one of the key features of cancer cell metabolism. Many cancer cells consume tremendous amounts of glucose and generate ATP via glycolysis even under normoxic conditions (the Warburg effect)4. Many theories have been promulgated to explain this observation, ranging from impaired mitochondrial function as the primary causative agent of cancer5, to a trade-off of inefficient energy metabolism for faster incorporation of carbon into biomass6, to a double selective advantage of hypoxia resistance and generation of local acidosis7. Molecular imaging techniques capable of identifying such differences have become very important for cancer diagnosis, disease progression, and treatment. Glucose tracers have been widely utilized for accessing the metabolic conversion of glucose to lactate predominantly via glycolysis. Metabolic imaging of cancer, which relies on unique physiologic hallmarks8, is sensitive but its widespread use is mainly limited to nuclear medicine. In the clinic, the glucose analog [18F]2-fluoro-2-deoxy-glucose (18FDG) is used for positron emission tomography (PET) high-resolution maps of glucose uptake, but it cannot report differences in flux aside from glucose uptake, and is associated with doses of ionizing radiation that carry an unknown, but real, risk of secondary cancer9,10. These tests are therefore limited to patients with known or suspected malignancy11. Also, due to limited lifetime radiation burden for a patient, 18FDG is less suitable for repetitive scanning for disease progression12. CEST MRI was developed to overcome some of the limitations of PET for glucose imaging. CEST detects glucose uptake indirectly by saturation transfer from the exchangeable protons of glucose to water, which enhances sensitivity relative to direct detection, but the technique is hampered by water exchange rates at physiological pH13,14. Dissolution dynamic nuclear polarization (dDNP) was developed to enhance SNR in 13C MR via polarization transfer from an electron source to nuclei, resulting in >10,000 times signal enhancement in the MRI signal15,16. However, dDNP is limited to a small set of molecules having the long relaxation times necessary to measure the kinetics before polarized signal is lost. Many important metabolites, i.e. glucose, have short relaxation times, and are difficult to image using dDNP methods17. In addition, lactate pool size convolves with lactate production rates to make fitting of dDNP dynamics subject to multiple preconditions for successful modeling18. Analysis of lactate isotopomers has been carried out using 13C labeled glucose and spin editing, but the 13C enrichment is not easily determined in some cases due to overlap with fatty acid (FA) resonances19. Due to the multiplicities from nuclear spin–spin couplings of the 1H-13C in lactate 13C-isotopomers, 1H-NMR spectra become complex. Direct 13C acquisition provides a straightforward method for isotopomer analysis but requires long data acquisition time20.
Deuterium (2H) magnetic resonance imaging (DMI), a new method for assessing metabolic flux in functioning tissues, cell culture, and in vivo, provides the requisite chemical, spatial and temporal resolution needed for cancer detection21. Nonradioactive 2H-labeled substrates can be utilized to observe the downstream metabolites, due to very low natural abundance of 2H (0.0115%), leading to high tracer specificity. Administration of deuterium-labeled substrates at tracer levels (<200 mg/kg 2H) is well established as safe22–24. In vivo 2H MR was investigated in the late 1980’s25–28, but has recently enjoyed a resurgence due to improved technology and the accumulation of decades of basic research on cancer metabolic phenotypes29. Previous studies using 2H MRI to image cancer metabolism relied on differential production of TCA cycle intermediates and lactate21. Deuterated tracers are inexpensive and straightforward to administer, but 2H MR sensitivity is low. Indeed, the experiment is only tractable because the quadrupole of the 2H nucleus makes its T1 short, facilitating very short recycle time (Tr). To cope with low sensitivity of 2H-NMR experiment for less abundant metabolites, more sensitive experiments and methodology need to be designed. We reasoned that enrichment of 2H2O (i.e. HDO production) after administration of deuterium-labeled glucose would provide a sensitive marker of glucose utilization by tumor cells in vivo, with a possibility for a simplified imaging strategy.
In this paper we have used highly sensitive 1H-NMR to measure the production of lactate isotopomers and 2H-NMR to measure HDO production and residual [2H7]glucose (eventually cellular glucose uptake) in the cell culture medium. The fate of the 2H tracer for lactate isotopomers, HDO production, and loss of 2H atoms from [2H7]glucose during glycolysis, sugar isomerization and pentose phosphate pathway (PPP) can be mapped using Fig. 1. Although deuterium J-coupled satellites are not well distinguished in 1H-NMR spectra due to the very low coupling constant of 2JH-D, 2H-decoupling and difference spectra can overcome these limitations21. Utilizing the small isotope shifts of mono-deuterated and di-deuterated lactate in the 1H-NMR spectrum, lactate-CH2D and lactate-CHD2 resonances are resolved, enabling a quantitative accounting of 2H disposal in this glycolytic end product. The estimates of HDO production rate combined with the production of the lactate isotopomers results in a complete accounting of the [2H7]glucose metabolism. An HUH-7 hepatocellular carcinoma cell line showed significantly increased HDO production versus a control AML12 cell line. The strong correlation between cellular glucose uptake and HDO production suggests HDO imaging is a promising approach for metabolic imaging of cancer that does not depend on exposure to radioactive isotopes.
Results
1H-NMR spectra of the cell culture media
1H-NMR spectra with and without 2H-decoupling were recorded for cell media sampled from 0 to 5 hours. NMR spectra from the 5 hour time point show pronounced isotope shifts for lactate-CH2D and lactate-CHD2 isotopomers (Fig. 2a,b). Methyl signals of the deuterium-enriched lactate appear broad in the 2H-decoupling-off 1H-NMR spectrum, whereas methyl signals appear as sharp doublets in 1H-NMR spectrum acquired with 2H-decoupling on during the acquisition. Each replacement of a methyl proton with a deuteron introduces an isotope shift in the 1H spectrum of ~10 Hz. The difference spectrum of lactate-CH2D and lactate-CHD2 show the (3JH-H) of ~7.00 Hz clearly. The lactate-CH3 doublet at 1.34 ppm shows a very small antiphase doublet in the subtraction spectra due to small differences in peak position between blocks prior to subtraction. The metabolic scheme shown in Fig. 1 indicates the formation of mono-deuterated and di-deuterated lactate isotopomers from [2H7]glucose, clearly observed in the {2H}1H spectrum (Fig. 2b). The stacked plot of the {2H}1H-NMR spectra of cell media samples as a function of time shows progressive 2H enrichment of lactate (Fig. 3A). Intensity of 1H-NMR signals for all of the lactate isotopomers increases with incubation time. A summary of lactate enrichments is included in Table 1.
Table 1.
Cell lines | HUH-7 | AML12 | ||
---|---|---|---|---|
Concentration (µmol/L) | Number of µmol of 2H | Concentration (µmol/L) | Number of µmol of 2H | |
Consumed [2H7]glucose | 3810.00 ± 485.83 | 26670.00 ± 3400.83 | 682.17 ± 108.45 | 4775.20 ± 438.32 |
Lactate-CHD2 | 2442.47 | 4884.9 | 353.07 | 706.14 |
Lactate-CH2D | 1520.0 | 1520.0 | 229.26 | 229.26 |
HDO | 18220.00 ± 3002.24 | 18220.00 ± 3002.24 | 3394.37 ± 705.14 | 3394.37 ± 705.14 |
µmol of 2H in 2H-lactate & HDO | 24625.00 | 4329.77 |
HUH-7 consumed high amounts of [2H7]glucose, which eventually enriched the HDO and deuterated lactate isotopomers. AML12 cell lines did not produce a quantitative accounting for 2H label, likely due to oxidative flux and unmeasured labeling of TCA cycle intermediates. (Note: [2H7]glucose and HDO were measured from 2H-NMR data and 2H-lactate (lactate-CHD2 and lactate-CH2D) was measured from 1H-NMR data of 5 hours incubation time point samples of AML12 and HUH-7 cells. Data is represented as mean ± SEM for [2H7]glucose and HDO).
2H-NMR spectra of cell culture media
Proton-decoupled 2H-NMR spectra were recorded for each of the withdrawn cell media as a function of time for samples from HUH-7 and AML12 cell lines. HDO signal intensity increases with incubation time period whereas [2H7]glucose decreases rapidly for HUH-7 cells as indicated by the stacked plot of 2H-NMR spectra (Fig. 3, Panel B). The stacked plot of 2H-NMR spectra of AML12 cell media samples at different time points indicated slow increase of HDO and slow decrease of [2H7]glucose (see Supplementary Fig. S1). Qualitatively both stacked plots demonstrated that the cellular [2H7]glucose uptake and HDO production rate is very high in HUH-7 cancer cells compared to AML12 cells, reflecting the presence of Warburg metabolism.
Longitudinal relaxation time (T1) measurement of the compounds
Once the lactate isotopomers were identified, it would be expected to observe differential changes in 1H T1 due to a loss of 1H dipolar relaxation. We performed T1 inversion recovery experiments in the 2H-decoupling on mode to calculate the T1 relaxation time of the pyrazine and lactate isotopomers (see Supplementary Fig. S2). A and B marks on the uppermost spectrum represent the pyrazine standard and methyl signals of the lactate isotopomers respectively. Integral areas of each of the lactate isotopomers and pyrazine standard were extracted to calculate the T1 relaxation times. Data was fit to the standard T1 equation, Mz(t) = M0 (1–2xe− τ/T1), to extract the T1 s. Supplementary Figure S3 shows fitting curves for T1 measurement and T1 values of lactate-CH3, lactate-CH2D and lactate-CHD2, are 1.85, 2.49 and 4.21 s respectively. T1 of the pyrazine standard was found to be 6.45 s. T1 relaxation time of the HDO and pyrazine-D4 standard were calculated using the inversion recovery 2H-NMR data (Supplementary Fig. S4) and found to be 0.49 and 0.45 s respectively. Supplementary Figure S6 includes the T1 measurement and T1 values of HDO and pyrazine-D4. This data was used to make a T1 correction to the concentrations of the lactate isotopomers.
Quantification of the lactate isotopomers
Pyrazine was used as an internal standard to quantify each of the lactate isotopomers. Peak areas of the isotopomers were extracted from each of the {2H}1H-NMR spectra of the cell culture media at different incubation times. After correction for T1 and for the number of 1Hs contributing to each resonance, the concentration of the isotopomers was plotted (Fig. 4). All lactate isotopomers in the media increase in concentration with incubation time period. Linearity for lactate isotopomer production and efflux from HUH-7 cells to culture medium is excellent with R2 of 0.99. Initially, fully protonated lactate is primarily produced, subsequently switching to deuterated versions as more [2H7]glucose is consumed (Fig. 5). At the 5 hour time point, the measured lactate-CHD2 isotopomer was 1.6 fold higher in concentration than the -CH2D isotopomer.
Quantification of the HDO and residual [2H7]glucose
Pyrazine-D4 was used as an internal standard to quantify the HDO production and residual [2H7]glucose in each of the cell media samples of HUH-7 and AML12 cell lines. Peak areas of pyrazine-D4, HDO and residual [2H7]glucose were used to measure the concentrations of HDO and residual [2H7]glucose with respect to the 5 mM pyrazine-D4 internal standard. Cellular [2H7]glucose consumption is calculated from the residual [2H7]glucose in the cell media whereas HDO production was corrected for the natural abundance HDO (18.0 + /− 0.5 mM) in the cell media samples of each time points. Deuterium NMR is very linear with concentration and has been used in similar applications in the past30. Comparison of glucose consumption to HDO production from the perdeuterated substrate demonstrates the advantages of this tracer versus the [6,6-2H2]tracer. Initial consumption of the glucose is rapid, with a sharp drop in glucose concentration mirrored by increases in [HDO]. The data points at 0 and 20 minutes were fit to a linear model which yielded production rates of 0.14 μmols/min*106 cells and 0.09 μmols/min*106 for the HUH-7 and AML12 cell lines respectively (Fig. 6a,b). Glucose consumption correlated with HDO production well in both cell lines (Fig. 6c). Lactate production as measured by 2H detected NMR did not correlate well with glucose uptake in either cell line (Fig. 6d).
Discussion
The 1H-NMR spectrum has a complicated pattern due to the very small geminal couplings (2JH-D) and vicinal couplings (3JH-H) of methyls of the partially deuterated lactate isotopomers (Fig. 2a). Since JH-D is roughly 1/6th of JH-H (γD/γH = 1/6.48), most of the couplings appeared as a line broadening in 2H-decoupling-off 1H-NMR spectrum. To resolve the methyl signals of lactate, 2H-decoupling was implemented during the acquisition period to remove the small geminal couplings (2JH-D). The {2H}1H-NMR spectrum in Fig. 2b shows a distinguished pattern of the remaining vicinal couplings (3JH-H) of ~7.00 Hz for each of the methyl signals of deuterated lactate as well as unlabeled lactate21. Deuterium-induced perturbations of 1H-NMR chemical shifts (isotope shift) allows resolution of the lactate isotopomers. The extent of isotope shift of methyl proton increases in the order CH3 < CH2D < CHD2, which produces a measurable peak separation31. Utilizing the advantage of the isotope shifts we could resolve the lactate isotopomers in {2H}1H-NMR spectra (Fig. 2b). Metabolism of the [2H7]glucose produces lactate-CH2D and lactate-CHD2, which is also evident from the 1H-NMR spectrum (Fig. 2b). No trace of any lactate isotopomer was found in blank cell media (Fig. 3a). After 20 minutes of incubation of HUH-7 cells, efflux of unlabeled lactate signals can be observed, presumably derived from unlabeled glucose or pyruvate that remained in the HUH-7 cells (Fig. 3b). However, unlabeled C3-lactate is continuously produced even in the presence of perdeuterated glucose due to the loss of 2H from the lactate precursors during glycolysis, specifically through the action of phosphomannose isomerase (PMI), triose phosphate isomerase (TPI), and keto-enol tautomerization of pyruvate (Fig. 1). As incubation time proceeds, appearance of methyl-deuterated lactate dominated the total lactate methyl region, whereas the lactate-CH (4.12 ppm) signal pattern becomes more complicated due to multiple vicinal couplings (3JH-H) of lactate-CH with lactate-CH3, -CH2D, and -CHD2. The metabolic scheme of the conversion of exogenous [2H7]glucose to lactate via glycolysis shows that the lactate-C2 is not deuterated due to the action of enolase (Fig. 1). Hence, methyl signals for all of the lactate isotopomers are expected to be doublets in {2H}1H-NMR spectra, which can be clearly seen in panel B (Fig. 3b–d). These observations match those of de Feyter, et. al., but a detailed explanation of the multiplets facilitates our discussion of mass balance of the 2H label in relation to HDO production21.
Proton relaxation times of the lactate isotopomers increases incrementally with the number of deuterons (see Supplementary Fig. S3). The dipole-dipole interaction is the dominant mechanism in the proton T1 relaxation time, and introducing lower-γ nuclei lengthens the relaxation of nearby 1H nuclei. Therefore, the intramolecular dipole-dipole interactions between the spin ½ nuclei, i.e. proton-proton, dominate any J-quadrupolar cross-relaxation term. With this effect T1 relaxation times of the lactate isotopomers increase in the order of lactate-CH3, -CH2D and -CHD2. Concentration of each of the deuterated lactate isotopomers increases with incubation time. At the start of the cell culture incubation, lactate-CH3 derived from endogenous source was effluxed into the cell media. It is expected that HUH-7 cells have taken some time to transport and metabolize exogenous [2H7]glucose. Production of labeled lactate rapidly increases after 1 h of incubation time. The rate of production of lactate-CH3, lactate-CH2D and lactate-CHD2 was calculated using linear regression and found to be 0.0033, 0.0071, and 0.0.012 µmol/106cells/min respectively. One of the key enzymes in glycolysis is aldolase (Fig. 1) which produces glyceraldehyde 3-phosphate (GA3P) and dihydroxyacetone phosphate (DHAP)32,33. GA3P proceeds down glycolysis and produces lactate-CHD2. DHAP converts into GA3P by activity of the triose phosphate isomerase (TPI) and then produces lactate-CH2D through the rest of glycolysis.
Relative percent contributions of lactate isotopomers to the efflux pool size demonstrate positive efflux thought the experiment (Fig. 5). At the 20 minute time point, contribution of lactate-CH3 was highest and labeled lactate contribution was low. Labeled lactate contribution rapidly increased whereas lactate-CH3 contribution decreased with incubation time. Labeled lactate contribution to the pool size was highest at 5 h and at this point lactate-CH3 has lowest contribution to the total pool size. It should be kept in mind that the lactate-CHD2 contribution to the pool size is always higher than that of the lactate-CH2D. Theoretically, the relative concentration and production rate of the lactate-CHD2 and lactate-CH2D should be equal, but we found differential concentration of the lactate isotopomers from [2H7]glucose. Total glycolytic rate is not affected by perdeuteration in heart tissue34, though we cannot firmly discount possible effects on total rate in these experiments.
Ben-Yoseph et. al. found a significant loss of 2H atoms from C1 and C6 of the [1-2H]glucose and [6,6-2H2]glucose respectively. Loss of 2H from C6 of glucose was mainly due to catalytic action of pyruvate kinase (PK) whereas loss of 2H from C1 of glucose was due to both PK and PMI (Fig. 1)35. De Feyter et. al. also showed that the loss of 2H atoms for 2H-lactate was ~8%, while using [6,6-2H2]glucose as a tracer21. The rate of 2H loss from lactate-CH2D and lactate-CHD2 precursors could be different due to deuterium secondary isotope effects; typical isotope effects may result in 10–15% higher loss of 2H from lactate-CH2D precursor36,37. The presence of a 2H kinetic isotope effect at TPI, results in more 2H liberation from the DHAP38,39. Due to these various factors involved in the metabolism of [2H7]glucose, a small amount of lactate-CH3 was continuously effluxed into the cell media from HUH-7 cells (Fig. 4). Pentose phosphate pathway (PPP) is another possible source of diversion of 2H from C1 of [2H7]glucose derived intermediates (Fig. 1)36,40. However, there was no measurable evidence of significant PPP flux in HUH-7 cells.
HDO will be produced by triose phosphate isomerase (TPI) from the C2 position of GA3P and DHAP, within the course of direct metabolism of one equivalent of [2H7]glucose to pyruvate (Fig. 1). HDO production from the C1/C2 positions can occur due to the interconversion of F6P and M6P via PMI41. Enolase activity on phospho-enol pyruvate (PEP) precursor and keto-enol tautomerization in pyruvate are also prominent sites of HDO production during glycolysis (Fig. 1)21,32,33,35,40,42–49. Apart from glycolysis, deuterium can also be lost to solvent water in the form of HDO in several reactions in the TCA cycle50,51.
Metabolism of [2H7]glucose produces an increase in the HDO signal that correlates with cellular glucose uptake in the HUH-7 cells, and a dramatic difference in HDO production has been observed between HUH-7 cancer cells and background precursor cells (AML12 cells) (Fig. 6). To prove the correlation of cellular [2H7]glucose uptake versus 2H-lactate and HDO production, we calculated the 2H mass balance at the 5 hour time point. Approximately 96% 2H atoms of [2H7]glucose were incorporated into 2H-lactate and HDO, strongly suggesting that the 2H-based Warburg metabolism dominates in HUH-7 cells (Table 1). [2H7]glucose uptake and HDO and 2H-lactate production were both much lower in AML12 cells. Glucose consumption correlates well with HDO production (Fig. 6c) indicating that HDO production is a robust analog to glucose uptake in normal and cancer cells. Lactate production measured by 2H-NMR does not serve as a surrogate for glucose uptake when using the perdeuterated substrate (Fig. 6d). On the contrary, the limited sensitivity of 2H detection causes lactate appearance to lag measured glucose consumption considerably. However, even with 1H detection of the lactate isotopomers, there is a noticeable, non-stoichiometric production of lactate from glucose in the initial 20 minute time period (see Supplementary Fig. S5). After the initial time point, lactate production scales in more logical ways versus the glucose consumption. We surmise that the limit of detection for lactate using both 1H and 2H NMR prevents rigorous mass balance at lower lactate levels. In contrast, since HDO production causes an increase in signal for the largest peak in the spectrum, it always results in a measurable effect. This suggests HDO production will serve as a more robust estimator of glycolytic flux than deuterated lactate production.
Based on parameters for oral52 and intravenous administration of glucose in humans and estimates of tumor geometry and cellularity53, HDO enrichment in the peritumoral area may reach several percent, sufficient to observe lengthening of 1H T1 due to less efficient dipole-dipole relaxation54. T1 weighted 1H imaging might therefore also be diagnostic, which would remove the need for purpose built 2H detection coils. A useful feature of our proposed tracer method versus methods based on TCA intermediate/lactate ratios is that it obviates the need to correct for 2H loss between the two species, reducing inter-subject variance and providing for easier extension to multiple tumor types.
From a practical point of view, {2H}1H-NMR experiments are easy to set up and require minimal time compared to direct 2H detection for 2H-lactate. Measuring the kinetics of the lactate isotopomer production from deuterated glucose by utilizing the more sensitive 1H-NMR experiment makes an easy method for measuring glycolytic rates. It is to be determined if this method could be translated for in vivo use. Lactate detection by 1H MRS is typically confounded by overlap of resonances derived from FAs. With a large FA signal the difference spectrum approach used here would have to be carefully implemented to prevent improper subtraction of the FA peaks and uncertainty in quantification of the 2H lactate. As compared to 13C based editing sequences, this method does not have to contend with a natural abundance correction. Also, the isotope shifts could potentially provide a more robust subtraction signal. The differential T1 of the lactate isotopomers is more difficult to take advantage of, as the T1 is lengthened upon 2H-enrichment. Standard T1 weighting would not provide contrast from the isotopomers. Specific choice of the delay time might allow the lactate-CH3 signal to be nulled which the 2H isotopomers remain using inversion recovery schemes.
In conclusion, Warburg metabolism is phenotypic of many cancers. Increased lactate production is a consequence of increased glucose consumption and reduced pyruvate dehydrogenase flux in cancer cells. Here we show that quantitation of HDO production may provide a simplified means for metabolic imaging of the deuterium signal specific to cancer cell glucose uptake, analogous to [18F]-FDG PET, with superior signal-to-noise compared to other metabolites like lactate and glutamate. As compared to earlier results with [6,6-2H2]glucose, this method retains the selectivity of lactate enrichment, but with the increased likelihood of HDO generation, amplifies the sensitivity of the experiment to increased glycolytic flux. Either technique can be implemented on preclinical or clinical hardware and may provide the basis for a safe, zero-dose method of imaging cancer glucose uptake and Warburg metabolism.
Methods
Cell line, chemicals, and media
HUH-7 hepatocellular carcinoma cells were received as a gift from Dr. Ralph Deberardinis at the Children’s Research Institute at University of Texas Southwestern Medical Center, Dallas, TX, USA. AML12 cell lines were purchased from the American Type Culture Collection (Manassas, VA). Pyrazine, Pyrazine-D4 and [1,2,3,4,5,6,6-2H7]-D-glucose ([2H7]glucose) were purchased from Sigma Aldrich, (St. Louis, MO, USA).
Cell culture
HUH-7 and AML12 cell lines were cultured in a complete growth medium made up of Dulbecco’s Modified Eagle Medium (DMEM) with 10% v/v FBS, 10,000 units/mL penicillin, 10,000 µg/mL streptomycin, 25 µg/mL amphotericin B and 5.5 mM D-glucose. Cell lines were maintained at 37 °C in a 5% CO2 in air atmosphere in an air-jacketed incubator (Heracell Vios 160i, Thermo Scientific, Waltham, MA). Growth media was replaced every 3 days, and cells subcultured 1:5 at 80% confluence. Five 100 mm OD (56.7 cm2 culture area) cell culture plates containing 15 million HUH-7 or AML12 cells (total) at 70–80% confluence were washed once with warm PBS and incubated with 4 mL each of phenol red-free DMEM with 5.5 mM [2H7]-glucose for 5 h, withdrawing 100 µL aliquots at 20 min, 1 h, 2 h, and 5 h.
Sample preparation
No extraction was performed on the cell media samples. Pyrazine and pyrazine-D4 were mixed to achieve 5 mM concentration of each of the standards in each cell media samples of HUH-7 and AML12 cells. Pyrazine and pyrazine-D4 served as an internal standard to quantify the lactate isotopomers from 1H-NMR data and HDO as well as residual [2H7]glucose from 2H-NMR data respectively. 40 µL of cell medium was transferred into 1.7 mm NMR tubes for NMR analysis.
1H-NMR spectroscopy
All NMR spectra were recorded on a 600.23 MHz NMR, equipped with a 1.7 mm TCI CryoProbe and Avance Neo Console (Bruker Biospin). All NMR experiments were set up in the lock off followed by sweep off mode. 2H-decoupling off and on 1H-NMR spectra were acquired with a sequence that alternated decoupling with each scan. Relaxation delay (d1) of 1.5 s and acquisition time (AQ) of 2 s (3.5 s of recycling time, Tr) and a 90° pulse of 10.50 µs was used for acquisition of each of the spectra. The WET method containing selective pulses was applied on the strong water resonance55. Waltz16 2H-decoupling sequence consists of a 90° pulse of 250 µs with decoupling power of 1.72 watts, producing a B1 of 1 kHz during the acquisition period. 13,157 complex data points were acquired with the spectral width of 11ppm. 128 scans were used to acquire each spectrum. 4 dummy scans were also used for equilibration of the spin states prior to acquisition. Modified T1 inversion recovery pulse sequence with 2H-decoupling on during the acquisition was used to measure the T1 of the lactate isotopomers and pyrazine standard. A relaxation delay (d1) of 50 s and inversion recovery delays (τ) of 0.001, 0.6, 0.9, 1.5, 2.0, 3.0, 6.0, 9.0, 14.0, 20.0, 30.0 and 40.0 s were used to determine the T1 of lactate isotopomers.
2H-NMR spectroscopy
The deuterium lock channel was used to acquire the 1H-decoupled 2H-NMR spectra at 92.13 MHz resonant frequency. A relaxation delay (d1) of 2 s and acquisition time (AQ) of 1 s (3 s of recycling time, Tr) with a 90° pulse was used to acquire each of the 2H-NMR spectra. 1086 complex data points were digitized with the spectral width of 11 ppm using 1024 scans for each of the 5 FIDs (5120 scans) for each of the samples. The T1 inversion recovery pulse sequence was used to calculate the T1 relaxation times of HDO and pyrazine-D4 standard. A relaxation delay (d1) of 5 s, acquisition time (AQ) of 1 s and inversion recovery delays (τ) of 0.001, 0.1, 0.4, 0.8, 1.6, and 3.2 s were used to acquire an array of FIDs to calculate the T1 of HDO and pyrazine-D4. All NMR experiments were carried out at the room temperature (25 °C).
1H-NMR data processing and quantification of lactate isotopomers
NMR data analysis was performed using MestReNova v14.0.1-23284 (Mestrelab Research S.L.). For processing of the 1H-NMR spectrum, the spectra were zero-filled to 32,768 points with an exponential window function of 0.3 Hz before the Fourier Transform (FT). Manual phase and automatic spline baseline correction were performed on each of the spectra.
2H-decoupled 1H-NMR spectra of each time point were used for the extraction of the areas of lactate isotopomers and pyrazine internal standard. The MestReNova line fitting tool was used to extract the peak areas of the slightly overlapped signals for quantification of the lactate isotopomers. Concentration of the lactate isotopomers were measured with the relative concentration of pyrazine (5 mM) in each sample. T1 relaxation times were also measured for each of the lactate isotopomers and pyrazine standard. A T1 correction factor was used to calculate the absolute concentrations of each of the lactate isotopomers56.
2H-NMR data processing and quantification of HDO and residual [2H7]glucose
2H-NMR spectra were processed with zero-filling of FID to 4096 points followed by exponential window function of 1 Hz before the Fourier Transform (FT). Each spectrum was manually phase corrected and followed by automatic spline baseline correction. Five FIDs were acquired for each of the samples and all five 2H-NMR spectra were aligned and summed-up to compensate for peak shifting due to magnetic field drift over the course of the experiment.
Concentrations of HDO and residual [2H7]glucose in the cell media were calculated using peak areas of the internal standard pyrazine-D4, HDO, and residual [2H7]glucose from 2H-NMR spectrum. Concentration of pyrazine-D4 (5 mM) was used to measure the concentration of HDO and residual [2H7]glucose, normalized to the number of deuterons responsible for corresponding resonances.
Supplementary information
Acknowledgements
A portion of this work was performed at the National High Magnetic Field Laboratory, which is supported by National Science Foundation Cooperative Agreement number DMR-1644779, & the State of Florida, NIH P41-122698, 5U2CDK119889, and NIH R01-105346.
Author contributions
R.M. and P.L.D. contributed equally to this work. M.E.M. designed the experiments. R.M. performed NMR experiments and P.L.D. did cell culture experiments. R.M., P.L.D. and M.E.M. performed data analysis. All authors composed and reviewed the manuscript.
Data availability
Data generated or analyzed during this study are included in this article and its Supplementary Information files. Raw data is deposited on the metabolomics workbench.
Competing interests
The authors declare no competing interests.
Footnotes
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary information
is available for this paper at 10.1038/s41598-020-65839-8.
References
- 1.Zilberter Y, Zilberter M. The vicious circle of hypometabolism in neurodegenerative diseases: Ways and mechanisms of metabolic correction: Hypometabolism in Neurodegenerative Diseases. Journal of Neuroscience Research. 2017;95:2217–2235. doi: 10.1002/jnr.24064. [DOI] [PubMed] [Google Scholar]
- 2.Pavlova NN, Thompson CB. The Emerging Hallmarks of Cancer Metabolism. Cell Metabolism. 2016;23:27–47. doi: 10.1016/j.cmet.2015.12.006. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3.Samuel VT, Shulman GI. Nonalcoholic Fatty Liver Disease as a Nexus of Metabolic and Hepatic Diseases. Cell Metabolism. 2018;27:22–41. doi: 10.1016/j.cmet.2017.08.002. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4.Warburg O. On respiratory impairment in cancer cells. Science. 1956;124:269–270. [PubMed] [Google Scholar]
- 5.Warburg O. On the origin of cancer cells. Science. 1956;123:309–314. doi: 10.1126/science.123.3191.309. [DOI] [PubMed] [Google Scholar]
- 6.Vander Heiden MG, Cantley LC, Thompson CB. Understanding the Warburg Effect: The Metabolic Requirements of Cell Proliferation. Science. 2009;324:1029–1033. doi: 10.1126/science.1160809. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7.Gatenby RA, Gillies RJ. Why do cancers have high aerobic glycolysis? Nature Reviews Cancer. 2004;4:891–899. doi: 10.1038/nrc1478. [DOI] [PubMed] [Google Scholar]
- 8.Hanahan D, Weinberg RA. Review Hallmarks of Cancer: The Next Generation. Cell. 2011;144:646–674. doi: 10.1016/j.cell.2011.02.013. [DOI] [PubMed] [Google Scholar]
- 9.Linet, M. S. et al. Cancer Risks Associated With External Radiation From Diagnostic Imaging Procedures. 62, 75–100 (2012). [DOI] [PMC free article] [PubMed]
- 10.Dwarakanath BilikereS, Kaushik Aruna, Jaimini Abhinav, Tripathi Madhavi, D′Souza Maria, Sharma Rajnish, Mondal Anupam, Mishra AnilK. Estimation of radiation dose to patients from[18]FDG whole body PET/CT investigations using dynamic PET scan protocol. Indian Journal of Medical Research. 2015;142(6):721. doi: 10.4103/0971-5916.174563. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 11.Bomanji J, Costa D, Ell P. Clinical role of positron emission tomography in oncology. The Lancet Oncology. 2001;2:157–164. doi: 10.1016/s1470-2045(00)00257-6. [DOI] [PubMed] [Google Scholar]
- 12.Kim MM, Parolia A, Dunphy MP, Venneti S. Non-invasive metabolic imaging of brain tumours in the era of precision medicine. Nat. Rev. Clin. Oncol. 2016;13:725–739. doi: 10.1038/nrclinonc.2016.108. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13.Walker-Samuel S, et al. In vivo imaging of glucose uptake and metabolism in tumors. Nat. Med. 2013;19:1067–1072. doi: 10.1038/nm.3252. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.van Zijl PCM, Jones CK, Ren J, Malloy CR, Sherry AD. MRI detection of glycogen in vivo by using chemical exchange saturation transfer imaging (glycoCEST) Proceedings of the National Academy of Sciences. 2007;104:4359–4364. doi: 10.1073/pnas.0700281104. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.Ardenkjaer-Larsen JH, et al. Increase in signal-to-noise ratio of >10,000 times in liquid-state NMR. Proceedings of the National Academy of Sciences. 2003;100:10158–10163. doi: 10.1073/pnas.1733835100. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Kurhanewicz J, et al. Analysis of Cancer Metabolism by Imaging Hyperpolarized Nuclei: Prospects for Translation to Clinical Research. Neoplasia. 2011;13:81–97. doi: 10.1593/neo.101102. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Schroeder MA, Clarke K, Neubauer S, Tyler DJ. Hyperpolarized Magnetic Resonance: A Novel Technique for the In Vivo Assessment of Cardiovascular Disease. Circulation. 2011;124:1580–1594. doi: 10.1161/CIRCULATIONAHA.111.024919. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Day SE, et al. Detecting tumor response to treatment using hyperpolarized 13 C magnetic resonance imaging and spectroscopy. Nature Medicine. 2007;13:1382–1387. doi: 10.1038/nm1650. [DOI] [PubMed] [Google Scholar]
- 19.Jucker BM, Rennings AJM, Cline GW, Shulman GI. 13 C and 31 P NMR Studies on the Effects of Increased Plasma Free Fatty Acids on Intramuscular Glucose Metabolism in the Awake Rat. J. Biol. Chem. 1997;272:10464–10473. doi: 10.1074/jbc.272.16.10464. [DOI] [PubMed] [Google Scholar]
- 20.Lloyd SG, Zeng H, Wang P, Chatham JC. Lactate isotopomer analysis by1H NMR spectroscopy: Consideration of long-range nuclear spin-spin interactions. Magn. Reson. Med. 2004;51:1279–1282. doi: 10.1002/mrm.20075. [DOI] [PubMed] [Google Scholar]
- 21.De Feyter HM, et al. Deuterium metabolic imaging (DMI) for MRI-based 3D mapping of metabolism in vivo. Sci Adv. 2018;4:eaat7314. doi: 10.1126/sciadv.aat7314. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Jones, P. J. H. & Leatherdale, S. T. Stable isotopes in clinical research: safety reaffirmed. 1480, 277–280 (2015). [DOI] [PubMed]
- 23.Koletzko B, Sauerwald T, Demmelmair H. Safety of stable isotope use. European Journal of Pediatrics, Supplement. 1997;156:12–17. doi: 10.1007/pl00014267. [DOI] [PubMed] [Google Scholar]
- 24.Klein PD, Klein ER. Stable Isotopes: Origins and Safety. The Journal of Clinical Pharmacology. 1986;26:378–382. doi: 10.1002/j.1552-4604.1986.tb03544.x. [DOI] [PubMed] [Google Scholar]
- 25.Ackerman JJH, Ewy CS, Becker NN, Shalwitz RA. Deuterium nuclear magnetic resonance measurements of blood flow and tissue perfusion employing 2H2O as a freely diffusible tracer. Proceedings of the National Academy of Sciences of the United States of America. 1987;84:4099–4102. doi: 10.1073/pnas.84.12.4099. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26.Ewy CS, Ackerman JJH, Balaban RS. Deuterium NMR cerebral imaging in Situ. Magnetic Resonance in Medicine. 1988;8:35–44. doi: 10.1002/mrm.1910080105. [DOI] [PubMed] [Google Scholar]
- 27.Ewy CS, Babcock EE, Ackerman JJH. Deuterium nuclear magnetic resonance spin-imaging of D2O: A potential exogenous MRI label. Magnetic Resonance Imaging. 1986;4:407–411. [Google Scholar]
- 28.Müller S, Seelig J. In vivo NMR imaging of deuterium. Journal of Magnetic Resonance (1969) 1987;72:456–466. [Google Scholar]
- 29.Tee S, Keshari KR. Novel Approaches to Imaging Tumor Metabolism. The Cancer Journal. 2015;21:165–173. doi: 10.1097/PPO.0000000000000111. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Jones JG, Merritt M, Malloy C. Quantifying tracer levels of 2H2O enrichment from microliter amounts of plasma and urine by 2H NMR. Magnetic Resonance in Medicine. 2001;45:156–158. doi: 10.1002/1522-2594(200101)45:1<156::aid-mrm1020>3.0.co;2-z. [DOI] [PubMed] [Google Scholar]
- 31.Schah-Mohammedi P, et al. Hydrogen/Deuterium-Isotope Effects on NMR Chemical Shifts and Symmetry of Homoconjugated Hydrogen-Bonded Ions in Polar Solution. J. Am. Chem. Soc. 2000;122:12878–12879. [Google Scholar]
- 32.Tittmann K. Sweet siblings with different faces: The mechanisms of FBP and F6P aldolase, transaldolase, transketolase and phosphoketolase revisited in light of recent structural data. Bioorganic Chemistry. 2014;57:263–280. doi: 10.1016/j.bioorg.2014.09.001. [DOI] [PubMed] [Google Scholar]
- 33.Harris, T. K., Cole, R. N., Comer, F. I. & Mildvan, A. S. Proton Transfer in the Mechanism of Triosephosphate Isomerase †. 2, 16828–16838 (1998). [DOI] [PubMed]
- 34.Funk AM, et al. The rate of lactate production from glucose in hearts is not altered by per-deuteration of glucose. Journal of Magnetic Resonance. 2017;284:86–93. doi: 10.1016/j.jmr.2017.09.007. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35.Ben-Yoseph O, Kingsley PB, Ross BD. Metabolic loss of deuterium from isotopically labeled glucose. Magnetic Resonance in Medicine. 1994;32:405–409. doi: 10.1002/mrm.1910320317. [DOI] [PubMed] [Google Scholar]
- 36.Ross BD, Kingsley PB, Ben-Yoseph O. Measurement of pentose phosphate-pathway activity in a single incubation with [1,6-13C2,6,6-2H2]glucose. Biochemical Journal. 1994;302:31–38. doi: 10.1042/bj3020031. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37.Saur WK, Peterson DT, Halevi EA, Crespi HL, Katz JJ. Deuterium isotope effects in the fermentation of hexoses to ethanol by Saccharomyces cerevisiae. II. A steady-state kinetic analysis of the methyl group of ethanol in an isotopic mirror fermentation experiment. Biochemistry. 1968;7:3537–3546. doi: 10.1021/bi00850a031. [DOI] [PubMed] [Google Scholar]
- 38.Browning JD, Burgess SC. Use of 2 H 2 O for estimating rates of gluconeogenesis: determination and correction of error due to transaldolase exchange. American Journal of Physiology-Endocrinology and Metabolism. 2012;303:E1304–E1312. doi: 10.1152/ajpendo.00306.2012. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.Leadlay PF, Albery WJ, Knowles JR. Energetics of triosephosphate isomerase: deuterium isotope effects in the enzyme-catalyzed reaction. Biochemistry. 1976;15:5617–5620. doi: 10.1021/bi00670a029. [DOI] [PubMed] [Google Scholar]
- 40.Cosgrove MS, Naylor C, Paludan S, Adams MJ, Levy HR. On the mechanism of the reaction catalyzed by glucose 6-phosphate dehydrogenase. Biochemistry. 1998;37:2759–2767. doi: 10.1021/bi972069y. [DOI] [PubMed] [Google Scholar]
- 41.Chandramouli V, Ekberg K, Schumann WC, Wahren J, Landau BR. Origins of the hydrogen bound to carbon 1 of glucose in fasting: significance in gluconeogenesis quantitation. American Journal of Physiology-Endocrinology and Metabolism. 1999;277:E717–E723. doi: 10.1152/ajpendo.1999.277.4.E717. [DOI] [PubMed] [Google Scholar]
- 42.Read J, et al. The crystal structure of human phosphoglucose isomerase at 1.6 Å resolution: implications for catalytic mechanism, cytokine activity and haemolytic anaemia. Journal of Molecular Biology. 2001;309:447–463. doi: 10.1006/jmbi.2001.4680. [DOI] [PubMed] [Google Scholar]
- 43.Lorentzen E, Siebers B, Hensel R, Pohl E. Mechanism of the Schiff base forming fructose-1,6-bisphosphate aldolase: Structural analysis of reaction intermediates. Biochemistry. 2005;44:4222–4229. doi: 10.1021/bi048192o. [DOI] [PubMed] [Google Scholar]
- 44.RIEDER SV, ROSE IA. The mechanism of the triosephosphate isomerase reaction. The Journal of biological chemistry. 1959;234:1007–10. [PubMed] [Google Scholar]
- 45.Reis M, et al. The catalytic mechanism of glyceraldehyde 3-phosphate dehydrogenase from Trypanosoma cruzi elucidated via the QM/MM approach. Physical Chemistry Chemical Physics. 2013;15:3772–3785. doi: 10.1039/c3cp43968b. [DOI] [PubMed] [Google Scholar]
- 46.Duquerroy S, Camus C, Janin J. X-ray Structure and Catalytic Mechanism of Lobster Enolase. Biochemistry. 1995;34:12513–12523. [PubMed] [Google Scholar]
- 47.Lebioda L, Stec B. Mechanism of Enolase: The Crystal Structure of Enolase-Mg2+-2-Phosphoglycerate/Phosphoenolpyruvate Complex at 2.2-Å Resolution. Biochemistry. 1991;30:2817–2822. doi: 10.1021/bi00225a012. [DOI] [PubMed] [Google Scholar]
- 48.Hanau S, Montin K, Cervellati C, Magnani M, Dallocchio F. 6-Phosphogluconate Dehydrogenase Mechanism. Journal of Biological Chemistry. 2010;285:21366–21371. doi: 10.1074/jbc.M110.105601. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 49.Reed, G.H., Poyner, R. R., Larsen, T. M., Wedekind, J. E. & Rayment, I. Structural and mechanistic studies of enolase. 1119 (2004). [DOI] [PubMed]
- 50.Aguayo JB, McLennan IJ, Graham C, Cheng H-M. Dynamic monitoring of corneal carbohydrate metabolism using high-resolution deuterium NMR spectroscopy. Experimental Eye Research. 1988;47:337–343. doi: 10.1016/0014-4835(88)90016-4. [DOI] [PubMed] [Google Scholar]
- 51.Lu M, Zhu X-H, Zhang Y, Mateescu G, Chen W. Quantitative assessment of brain glucose metabolic rates using in vivo deuterium magnetic resonance spectroscopy. J. Cereb. Blood Flow Metab. 2017;37:3518–3530. doi: 10.1177/0271678X17706444. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 52.Gunning RR. Bioactivity of Instant Glucose. Jama. 1978;240:1611. [PubMed] [Google Scholar]
- 53.Kondo F. Histological features of early hepatocellular carcinomas and their developmental process: For daily practical clinical application. Hepatology International. 2009;3:283–293. doi: 10.1007/s12072-008-9107-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 54.Sherry AD, Birnbaum ER, Darnall DW. Proton relaxation studies in H2O-D2O mixtures. Analytical Biochemistry. 1973;52:415–420. doi: 10.1016/0003-2697(73)90044-4. [DOI] [PubMed] [Google Scholar]
- 55.Mo H, Raftery D. Improved residual water suppression: WET180. J. Biomol. NMR. 2008;41:105–111. doi: 10.1007/s10858-008-9246-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56.Bharti SK, et al. Improved quantification from 1H-NMR spectra using reduced repetition times. Metabolomics. 2008;4:367–376. [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Data Availability Statement
Data generated or analyzed during this study are included in this article and its Supplementary Information files. Raw data is deposited on the metabolomics workbench.