Abstract
Were southern hemisphere countries right to undertake national lockdown during their summer time? Were they right to blindly follow the self-isolation wave that hit European countries in full winter? As a southern hemisphere country like South Africa stands now as the most COVID-19 and HIV affected country in Africa, we use in this paper, recent COVID-19 data to provide a statistical and comparative analysis that may alert southern hemisphere countries entering the winter season. After that, we use a generalized simple mathematical model of HIV-COVID-19 together with graphs, curves and tables to compare the pandemic situation in countries that were once the epicenter of the disease, such as China, Italy, Spain, United Kingdom (UK) and United States of America (USA). We perform stability and bifurcation analysis and show that the model contains a forward and a backward bifurcation under certain conditions. We also study different scenarios of stability/unstability equilibria for the model. The fractional (generalized) COVID-19 model is solved numerically and a predicted prevalence for the COVID-19 is provided. Recall that Brazil and South Africa share number of similar social features like Favellas (Brazil) and Townships (South Africa) with issues like promiscuity, poverty, and where social distanciation is almost impossible to observe. We can now ask the following question: Knowing its HIV situation, is South Africa the next epicenter in weeks to come when winter conditions, proven to be favorable to the spread of the new coronavirus are comfily installed?
Keywords: Coronavirus dynamics, Mathematical model, Li Wenliang, Metapopulation movement, Virus spread
MSC: 65P30, 92B05, 26A33, 92C60, 92D30, 62Q05
1. Introduction
It is in December 2019 that a new pneumonia, today known as coronavirus disease 2019 or shorlty COVID-19, locally started off in the Chinese city of Wuhan. As of 30 May 2020, the world recorded almost 5.96 million cases of COVID-19 reported worldwide in about 188 countries, nations and territories. Among those reported cases, almost 366,000 people have succumbed to the disease (Figs. 1 and 8) but fortunately, almost 2.52 million people have recovered. It is only on 11 March 2020 that the World Health Organization (WHO) declared the COVID-19 a pandemic. Maybe this unprecedented situation, since the 1918 Spanish flu pandemic [1], would have been different if the alert call from Li Wenliang [2] was taken into consideration on time by Chinese authorities. Hence, the worldwide epicenter of the disease has since hit several countries, from China to USA via Italy, Spain and UK ( Fig. 2, Fig. 3, Fig. 4 and 6). It has now moved to the southern hemisphere country of Brazil with the winter season (Fig. 4).
Highly contagious, COVID-19 is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and has been proven to spread easily when cold winter conditions are met. In fact, some research made recently [3] have shown that the SARS-CoV-2 can easily spread in communities that live in places where the temperature is relatively low, around 5 to 11 degrees Celsius, all associated with low specific, of around 3 to 6 g/kg and absolute humidity of around 4 to 7 g/m 3. As southern hemisphere moves to the winter season, there are worries to feel for two particular countries whose the number of deaths keeps rising: Chile and South Africa (Figs. 5 and 7 ). More worries for South Africa as the country stands not only as the current most COVID-19 affected country in Africa but also the most HIV affected country. Moreover, the alarming situation in Brazil should be a huge concern for South Africa as both countries face similar precarious social issues as shown in Table 1 . Recent statistics [4], [5] show that COVID-19 mostly kills people with pre-existing diseases such as diabetes, high blood pressure, tuberculosis and also HIV. Hence, this motivated us to study in this paper, a combined HIV-COVID-19 model is order to start another alert call for those concerned countries at risk.
Table 1.
FAVELLAS | TOWNSHIPS | |
---|---|---|
Country | Brazil | South Africa |
Approximative population | 11 million (6%) | 14.7 million (25%) |
(% of the total population) | ||
Residents | Mainly African descents | Mainly Africans |
Characteristics | Poverty, sanitation, water, | Poverty, infrastructure |
garbage collection | problems,water supply problem | |
promiscuity | densely populated | |
COVID-19 state | Most affected in Latin America | Most affected in Africa |
Feature | The country’s president | The country’s president |
chose not to go for a | chose to easy the lockdown | |
hard lockdown despite an | despite an increasing | |
increasing number of deaths | number of deaths |
2. A simple COVID-19 model combined to HIV
2.1. A simple HIV-COVID-19 model formulation and assumptions
As commonly done in mathematical epidemiology for other type of diseases [8], [9], [10], [11], [12], [13], [14], [15], we start by formulating the model and clarifying the assumptions that will be used throughout. In this section, a simple system modeling the temporal dynamics of the Corona virus (2019-nCov) combined to HIV within human population is described. As we don’t have yet all the answers on the real dynamics and spread of the new 2019-nCov, we focus on people who are already COVID-19 infectious (symptomatic or asymptomatic individuals). We assume the people population Np to be constant and divide it into four different compartments according to their status with respect to the diseases. Hence, at the t, we denote by the fraction of the people population that are susceptible, by the fraction of the people population that is COVID-19 only infectious, by the fraction of the people population that is HIV only infectious, by the fraction of the people population that is dually infectious with HIV and COVID-19. We assume that the COVID-19 infection process originates from a reservoir or a source of infection (called Ξ) with animals (pangolin or bats, etc) with a total population of that can be divided into two different compartments: The susceptible to COVID-19 () and COVID-19 infectious (). We assume that individuals in the susceptible compartment are recruited into the people population at a rate Λp which is constant. Infections with COVID-19 of those individuals happen at a rate of λc due to sufficient contact with infected animals in Ξ, and they then move to the compartment of COVID-19 infectious individuals, Ic. Moreover, infections with HIV happen at a rate of λh due to sufficient contact with infected individuals and therefore, susceptible individuals move to the compartment of HIV infectious individuals, Ih. People who are infected with COVID-19 only either recover thanks to their own immunity and are moved, at a rate of γ, into the compartment of susceptible individuals or are infected with HIV due to sufficient contact with infected individuals, at the fraction rate of ελh, (with ε ∈ (0, 1]. Recall [16] that ε is taken as such because we expect an eventual drop of sexual intercourse (principal known cause of HIV transmission) of people who are infected with COVID-19 due to the disease. They then move into the compartment Ihc of dually infectious with HIV and COVID-19. The disease COVID-19 kills people at the rate of κc. People who are infected with HIV only either die due to the disease or get the infection with Corona virus, at the rate of θλh, due to sufficient contact with infected source. They then move into the compartment Ihc of dually infectious with HIV and COVID-19. Here we take θ > 1 since people infected with HIV have a lower immune system and therefore, are highly susceptible to catch COVID-19. Individuals with both HIV and COVID-19 can recover from COVID-19 thanks to own immunity and are moved, at a rate of ϖ into the compartment of individuals infected with HIV only or die from COVID-19 at the rate of τκc. Here we take τ > 1 because of the high probability of mortality within the people in Ihc, with both HIV and COVID-19 compared to individuals infected with COVID-19 only. Furthermore, individuals with both HIV and COVID-19 can also die HIV at a rate of νκh. Here we take ν ≥ 1 because of the high probability of mortality within the people in Ihc, with both HIV and COVID-19 compared to individuals infected with HIV only. We denote by μh the rate at which death due natural causes occurs. We assume that susceptible animals in Ξ, are recruited into the population Nr at a rate of Λr which is constant. We assume that those animals can die the rate of μc or can become infected with COVID-19 at a rate of λr due to sufficient contact with infected animals and then move to the compartment of COVID-19 infectious Ir. Based on the above setting, the dynamics of the system is given by the transfer diagram as depicted in Fig. 10 and expressed by the following differential equations:
(1) |
where λc, λh and λr are respectively the forces of infection reading as
with βh representing the HIV infection effective contact rate, ξhc ≥ 1 representing the regularization parameter modeling the relative infectiousness of people with both HIV and COVID-19 (Ihc) compared to individuals infected with HIV only (Ih). For the new corona virus (2019-nCov), σ is the per capita vector-to-host contact rate of the animals in the reservoir. βc is the parameter accounting for the people transmission probability per vector-to-host contact while βr accounts for the same probability but for animals.
3. Sub-model’s analysis: Well-posedness, feasibility region and stability
In this section we start by analyzing the two sub-models (HIV only and COVID-19 only) contained in the model (1).
4. Sub-model: HIV only
We establish the HIV only sub-model from model (1) by putting which yields
(2) |
with the force of infection λh reading as
where In order analyze the HIV only system (2) of human population, we consider the region of biological feasibility given by.
we have the following results
Proposition 4.1
- 1.
Any solution (Sp(t), Ih(t)) of the HIV only system (2) remains non-negative for all time t > 0 if the corresponding initial condition is non-negative.
- 2.
the region Ωh is positively invariant for the HIV only system (2) when non-negative initial conditions are taken from In fact it is an attracting and absorbing compact set for the system (2) .
- 3.
Moreover, we haveandfor all t > 0 if
Proof
The sum of both equations of (2) gives
(3) proceeding with standard comparison and integration give
Hence we have if (or ). This conclusion also shows the attractiveness and absorbing results for Ω. □
The HIV only system (2) can therefore be treated as dynamical system in Ω in which it is well-posed.
4.1. The basic reproduction number
The disease-free equilibrium (or the DFE) of the HIV only system (2) reads as
Exploiting the next generation operator as detailed in [17] leads to the HIV only system (2) written into the matrix form where the matrices and are respectively given by
and
Evaluated at the DFE E 0, the Jacobian of those matrices yields
and
Hence the basic reproduction number is the spectral radius
4.2. Stability of the DFE E0
Using the linearization of the HIV only system (2) around the DFE E 0 we obtain the Jacobian matrix reading as
(4) |
We easily obtain the eigenvalues that reads as: which is negative and In terms of we have . Hence Thus, we have proven the following result
Proposition 4.2
The DFE E0of the model(2)is locally-asymptotically stable ifand unstable if
For the establishment of global asymptotical stability of the DFE E 0, we can use the method of Lyapunov-LaSalle by considering a Lyapunov function Then its time-derivative along a solution (Sp(t), Ih(t)) reads as
where we have used the fact that Hence, knowing that the system parameters are all non-negative, when Moreover, it happens that
Therefore, L is a Lyapunov function on Ωh and LaSalle’s Invariance Principle [18] implies that all limit points of solutions to the model (2) belong to the largest compact invariance set in In that set, and and thus as Thus, Therefore, every solution (Sp(t), Ih(t)), taking its initial conditions in Ωh, approaches the DFE as when Henceforth, we have proven the following result:
Proposition 4.3
The DFE E0of the model(2)is globally-asymptotically stable whenever
4.3. Endemic equilibrium
From (2) the endemic equilibrium is obtained by solving
(5) |
which yields
(6) |
with the force of infection
(7) |
Simple transformation of (6) and (7) leads to following polynomial in
(8) |
Hence we have which has a biological meaning only if the force of infection is non negative, meaning that Furthermore, in terms of (6) gives
(9) |
We have then shown the results
Lemma 4.4
The model(2)of HIV has a unique endemic equilibrium if and only ifMoreover, that unique endemic equilibrium locally asymptotically stable if
5. Sub-model: COVID-19 only
We establish the COVID-19 only sub-model from model (1) by putting which yields
(10) |
with the force of infection λc and λr reading respectively as
and
5.1. Basic reproduction number
The disease-free equilibrium (or the DFE) of the COVID-19 only system (10) reads as
Exploiting the next generation operator as detailed in [17] leads to the COVID-19 only system (10) written into the matrix form where the matrices and are respectively given by
and
Evaluated at the DFE E 0, the Jacobian of those matrices yields
and
Hence the basic reproduction number is the spectral radius
Following the same approach as in Proposition 4.2, we easily show that
Proposition 5.1
The DFEof the COVID-19 only sub-model(10)is locally-asymptotically stable ifand unstable if
6. Possibility of backward bifurcation for the COVID-19 sub-model
Our aim here in this section is to look at the conditions under which there exists a backward bifurcation for the model (10). Recall that this type of bifurcation happens when a stable DFE and a stable endemic equilibrium exist together for some values of the basic reproduction number less than one. Hence, we have to find conditions for which endemic equilibrium We pose
which yields
(11) |
with the forces of infection
(12) |
Simple transformation of (11) and (12) leads to following polynomial in
(13) |
where
and
We have here many endemic equilibrium points (solutions ) to
(14) |
and the solution () that is related to the DEF. Let
then clearly
(15) |
We have the following results
Proposition 6.1
The necessary condition for the existence of backward (subcritical) bifurcation for the model(10)isFurthermore, there isso that:
- Model(10)has one and only one endemic equilibrium point if
- Model(10)has two endemic equilibrium points if
- Model(10)has one endemic equilibrium point if
- Model(10)has no endemic equilibrium point if
The necessary condition for the existence of transcritical bifurcation for the model(10)is
Proof
To prove this, we use the equivalence relation (13)-(15) where it is obvious to see that Q 1 > 0. Moreover, Q 2 > 0 if and Q 2 < 0 if Also Q 3 > 0 if and Q 3 < 0 if
From (15) we have T < 1 when Hence, when we have Q 2 ≤ 0 meaning and Q 3 ≤ 0, and Eq. (14) has one and only one positive root. However, Eq. (14) has no positive root when meaning Q 2 ≥ 0 and Q 3 > 0.
Now in the case where we also have Q 2 < 0 and Q 3 ≥ 0. If denotes the discriminant of (14) and a functional of then
for F is strictly increasing in (T, 1) and and Therefore, there is so that with F < 0 in and F > 0 in Hence, - when Eq. (14) has two real and positive roots (since Q 2 < 0 and Q 3 > 0). That leads to model (10) having also two endemic equilibrium points. Similarly, - Eq. (14) has one positive root when - Eq. (14) has no positive root when if which concludes the proof. □
Now that we have a conditions on existence of a subcritical bifurcation for the COVID-19 model let us have a look at the full model. Note that according to the definition of the σ and βc it is clear that represents the COVID-19 transmission rate per vector-to-host contact per unit time.
7. The full HIV and COVID-19 combined model (1)
7.1. Stability of the DFE
Rewrite the model (1) as
(16) |
We can state the following result
Proposition 7.1
The DFE E0of the combined HIV and COVID-19 model(1)is locally-asymptotically stable ifand unstable if
Proof
Let and let denotes the disease-free equilibrium point. We can investigate the stability of the DFE E 0 by analyzing the eigenvalues of the Jacobian matrix evaluated at E 0. Linearizing the model (16) at the DFE E 0 yields
(17) where we have set
Assuming that solutions to (17) can take the exponential from
the substitution into (17) and canceling the term eλt yields
(18) This system has a characteristic equation given by
(19) equivalently
(20) with
Hence, from (18) some of the eigenvalues are given by
which are all negative. The fourth eigenvalue is the root of and reads as Obviously, λ 4 < 0 when and λ 4 > 0 when From the previous section where the DEF of the COVID-19 only model was analyzed, refers to the corresponding characteristic equations. Hence, we showed (Proposition 5.1) that has roots all with negative real parts for Moreover, has at least a root with a positive real part when Finally, for Eq. (20) has roots all with negative real parts and has at least a root with a positive real part when □
The bifurcation analysis are depicted in Figs. 11 and 12 showing condition for the model to have forward and backward bifurcations respectively. and show that the model contains a backward bifurcation under certain conditions. We also study different scenarios of stability and unstability state of equilibrium points (the DFE and the endemic equilibrium point) as shown in Fig. 13, Fig. 14, Fig. 15 . The globally stable DFE E 0 is illustrated in Fig. 13 while a stable endemic equilibrium, namely and an unstable endemic equilibrium are shown in Fig. 12 when . Fig. 15 shows that there exists a globally stable endemic equilibrium for the COVID-19 system (10) and an unstable DFE E 0, when
8. Endemic equilibria’s existence for combined HIV and COVID-19 model (1)
The endemic equilibrium, denoted by is obtained by solving
(21) |
where and are respectively the forces of infection a steady-state reading as
(22) |
Hence after solving (21), we obtain
(23) |
with
After some transformations using the later system and the forces of infection (22), we obtain characteristic equations with the following roots: plus the roots of
and
where K 1 and K 2 are respectively complex polynomials of order two in and order four in with coefficients which are also complex polynomials of order two in and order four in respectively.
Hence the later results show that there are some values for both reproduction numbers and and therefore for which the only obvious equilibrium point is the DFE. Similarly there some values for both reproduction numbers and and therefore for which the full combined HIV and COVID-19 model (16) has either a HIV equilibrium point or a COVID-19 equilibrium point. Lastly, there some values for both reproduction numbers and and therefore for which the combined HIV and COVID-19 model (16) a has a co-infection equilibrium point. Let us now study the COVID-19 global picture by numerically investigate the generalized version of the model (16).
9. Generalised COVID-19 model
we generalize the COVID-19 model (10) as
(24) |
with the force of infection λc and λr reading respectively as
and
and where is the classical Caputo fractional derivative that, for the order α, and for any t > 0, is defined as
(25) |
where and is a real and locally integrable function and
(26) |
is the fractional integral of order α associated to
In order to conveniently solve the combined fractional and fractal system (24), it is important to associate it with the following initial conditions:
(27) |
We now transform the system (24)-(27) so that it takes a compact form of the Legendre wavelets approach as described in [19], [20]. So consider
(28) |
Here Ψm(t) is the matrix whose elements define the Legendre wavelets given as
(29) |
with the shifted Legendre polynomial defined on [0, 1] as being the family
(30) |
T M 1, T M 2, T3 and T M 4 are the transpose of the matrices M 1, M 2, M 3 and M 4 respectively. Associating the initial conditions yields
(31) |
where is the Legendre operational matrix of integration and the subscript m denotes its dimension. We know that [19], [20], Legendre wavelets can be expanded into an m-term form as
(32) |
where is the Block Pulse Functions so that
(33) |
for each and Υ the Legendre wavelet matrix
Now the substitution of (32) into system (31) leads to
(34) |
Where
Now let
(35) |
Now Using the collocations points to disperse t, the substitution of (34) and (35) into system (24) and lead to
(36) |
Hence we obtain this non-linear system equations with 4m unknown coefficients which are easily found using Newton iteration method. Then exploiting model (31), leads the south numerical solution (Sp(t), Ic(t), Sr(t), Ir(t)).
10. Numerical simulations with some known COVID-19 data
We can implement in this section the numerical scheme presented above using some data recently given in the literature and summarized in the Table 2 . The numerical simulations for the behavior of the COVID-19 prevalence for the generalized model (24), performed for certain values of α are depicted in Fig. 16 (a) when and and Fig. 16 (b) when and
Table 2.
Parameters | Descriptions | Estimated baseline values |
---|---|---|
Λp | Recruitment rate of people population | 1000 |
Λr | Recruitment rate of susceptible animals | 2500 |
βc | Human transmission probability for COVID-19 | Variable |
βr | Animal transmission probability for COVID-19 | 0.05–1.6 |
σ | Per capita vector-to-host contact rate | –0.217 |
μh | Natural death rate in humans | 0.0131 |
μc | Natural mortality rate of animals | 0.035 |
κc | COVID-19 mortality rate | |
γ | People recovery rate from COVID-19 | 0.005 |
ϖ | HIV People recovery rate from COVID-19 | 0.002 |
θ, ν | Regulation parameters | 1.0021, 1.002 |
ε, τ, ξhc | Regulation parameters | 1,001, 1.001, 1.005, |
11. Concluding remarks
As shown in Fig. 1, Fig. 8 and Fig. 9 , the numbers of victims and fatalities due to HIV and the new coronavirus remain a fateful scourge around the world. The combination of both will certainly be explosive for most affected countries. We especially think of southern hemisphere countries getting out the summer and moving into the winter season. It is urgent for those countries (like South Africa and Chile) to be alerted while it is still time to react efficiently. Indeed, the world has ignored the first alert made before the pandemic, by the young and now late Chinese doctor Li Wenliang and this is paper serves as a COVID-19 alert for southern hemisphere countries like Chile and South Africa that are moving into the winter season and seeing to be heavily hit by the pandemic. As winter moved to the southern hemisphere, we also observed the epicenter of the new coronavirus shifting there to Brazil, which shares similar features (such as Favellas, townships, poverty, promiscuity) with South Africa and Chile. We have then used a generalized simple mathematical model of HIV-COVID-19 together with graphs, curves and tables to compare the pandemic situation in countries that were once the epicenter of the disease, such as China, Italy, Spain, United Kingdom and United States of America. We managed to show conditions for existence of stable equilibria and of different bifurcation (forward and backward) scenarios for the model. The fractional (generalized) COVID-19 model has been solved numerically and a predicted prevalence for the COVID-19 has been provided. There is a ground to be concerned for southern hemisphere countries now since it happens that all those countries that were once epicenter, were in their winter season during their status of epicenter of the COVID-19 and opted to ease the lockdown only after the peak of the disease was reached. The epicenter is now in Brazil, in full winter season, and we observe its health system and emergency services overcrowded by a large number of COVID-19 patients and deaths. Recent data show an increasing number of infections in Chile and South Africa. The combination with HIV cannot help. Moreover, still far from seeing the disease reaching its peak in the country, South Africa who has just enter into the winter season, opted to reopen the country’s activities and schools. This is exactly the opposite of what was observed in western countries. Recall that South Africa stands now as the most COVID-19 affected country in Africa and is it going to be the next epicenter in weeks to come when winter conditions favorable to the spread of the new coronavirus will be comfily installed? The answer is certainly affirmative seeing the social conditions in townships all over the country. The country has however started imposing social distanciation, wearing a face mask in public services, hiring of more health workers and targeted community tests. Will this be enough, as the country chose to reopen most of it economic sectors as from the 1 June 2020, which coincides with beginning of its winter season, we can now ask whether the lockdown that started on the 26 March 2020 was at the right moment. The coming months will tell us. Lastly, another worrying alert is the fact that winter is still going to move to Europe and we may see again the epicenter shifting towards the north, unless a cure or vaccine is found by then. Again the future months will tell us.
CRediT authorship contribution statement
Emile F. Doungmo Goufo: Conceptualization, Methodology, Writing - original draft. Yasir Khan: Data curation. Qasim Ali Chaudhry: Writing - original draft, Writing - review & editing, Investigation.
Declaration of Competing Interest
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
Acknowledgment
The second author extends their appreciation to the Deanship of Scientific Research, University of Hafr Al Batin for partially funding this work through the research group project no. (G-108-2020).
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