Abstract
Virus-specific T cell-mediated immunity is severely impaired in chronic hepatitis B virus (HBV) patients. HBV-specific T cells in chronic HBV patients show a low ability to produce cytokines and to exert their cytotoxic activity. A prominent characteristic of these exhausted T cells is overexpression of inhibitory receptor molecules which negatively regulate T cell function. In this study, we examined in vitro regulation of two inhibitory receptor expressions, programmed death 1 (PD-1) and T cell immunoglobulin mucin domain-containing molecule 3 (TIM-3). Peripheral blood mononuclear cells (PBMCs) obtained from healthy individuals were in vitro stimulated with a panel of cytokines. PD-1 and TIM-3 expression levels on CD4+ and CD8+ T cells were examined at days 2 and 7 post stimulation. We demonstrated that PD-1 and TIM-3 were induced via polyclonal (anti-CD3) and cytokine (interleukin 15 [IL-15]) stimulations. Noteworthy, there was a significantly increased induction of TIM-3 on CD8+ T cells as compared to CD4+ T cells. Our study thus contributes to further understanding the regulation of T cell exhaustion markers PD-1 and TIM-3.
Keywords: Inhibitory receptors, interleukin 15, PD-1, T cells, TIM-3
Introduction
An estimated 350 million individuals are chronically infected with the hepatitis B virus (HBV), and these infections cause significant morbidity and mortality worldwide. HBV-infected patients are at risk for chronic progressive liver disease such as liver cirrhosis and hepatocellular carcinoma [1]. Current treatment of chronic HBV using pegylated interferon-α (PEG-IFN-α)-based therapy or nucleos(t)ide analogs (NUC) have improved clinical outcome [2]. However, still a substantial number of patients fails to respond to the treatment. Moreover, several limitations of PEG-IFN-based treatment remain such as frequent side-effects on multiple organ systems that lead to discontinuation of the therapy in a group of patients. For NUC-based therapy, the side-effects are lower, yet the patients require long duration of treatments [2]. Immune-modulation therapy, either as mono or combination therapy, has been considered to achieve improved control of the viruses [3].
The persistence of HBV in hepatocytes of infected hosts has been facilitated by weak or absent HBV-specific immune responses [4,5]. Due to continuously high viral antigen pressure, the HBV-specific T cells in chronic HBV patients have a decreased ability to perform anti-viral actions either through direct cytolytic (production of perforin and granzymes) and non-cytolytic (production of IFN-γ) pathways [6]. The impaired T cell activity, termed as T cell exhaustion, was first demonstrated in chronic lymphocytic choriomeningitis virus (LCMV)-infected mice [7] and subsequently identified in chronic human viral infections, including human immunodeficiency virus (HIV), HBV and hepatitis C virus (HCV) as well as in cancer [8]. Noteworthy, due to the availability of tetramer staining, many studies focused on T cell exhaustion in CD8+ T cells, although it can also occur in CD4+ T cells [9-12].
T cell function is regulated by several extrinsic regulatory pathways, such as via the inhibitory cytokines interleukin 10 (IL-10) and transforming growth factor β (TGF-β) as well as regulatory T cells (Treg) [8]. In addition, T cell function is intrinsically modulated by expression of inhibitory receptor molecules such as PD-1, cytotoxic T-lymphocyte associated protein 4 (CTLA-4) and TIM-3 on the surface of T cells [8]. In chronic HBV and HCV patients, it has been shown that overexpression of these inhibitory receptors may have a negative impact on the functionality of T cells. Total and HBV- and HCV-specific T cells in chronic HBV and HCV patients overexpress many inhibitory receptor molecules, such as PD-1, 2B4 and TIM-3 [13-17]. Importantly, single or combination blockade of these inhibitory receptor molecules in vitro can enhance the functionality of exhausted T cells, as indicated by increased proliferation, cytokine production and cytotoxic activity [12,18,19].
This approach to reactivate exhausted virus-specific T cells was rapidly translated into clinical setting, especially for HCV [20,21]. Out of 56 chronic HCV patients who received a single dose of anti-PD-1 antibody, 6 patients showed a decline in their serum HCV RNA level of more than 0.5 log [21]. Tremelimumab, a fully human monoclonal antibody against CTLA-4, has been tested in advanced hepatocellular carcinoma (HCC) in combination with ablative therapies. A significant portion of patients with quantifiable HCV demonstrated a notable reduction in viral load [22]. Nivolumab, an anti-PD-1 human monoclonal antibody is currently being tested in Phase 1/2 trials for HBV- and HCV-associated HCC (NCT01658878). The role of inhibitory receptor molecules during chronic HBV and HCV infections and also their potential to be manipulated as a novel target for immunotherapy have previously been extensively reviewed by us [23,24] and others [25,26].
Despite significant achievements in understanding the immunoregulatory role of inhibitory receptors on HBV-specific T cells and their application in the clinic, their regulation of expression is still poorly understood. In fact, this is a foundation for understanding T cell responses during acute and chronic HBV and HCV, as well as other viral infections. Therefore, we investigated whether cytokines could modulate the expression of PD-1 and TIM-3 to improve our understanding on T cell regulation during inflammation or acute infections. During those conditions, T cells are highly exposed to various cytokines produced by immune or non-immune cells. Thus, our study may contribute to further understanding the regulation of inhibitory receptors PD-1 and TIM-3. In translational settings, findings of this study may provide guidance to more optimize immune-based therapy targeting the inhibitory receptors in chronic HBV and HCV infections.
Methods
Isolation and cullture of peripheral blood mononuclear cells (PBMCs)
PBMCs of healthy individuals were isolated from venous blood by ficoll separation according to the manufacturer instructions (Ficoll-PaqueTM plus, Amersham). PBMCs were cultured at 2×105 cells per well in RPMI 1640 medium supplemented with 5% human serum, penicillin, streptomycin, HEPES and L-glutamine.
In vitro stimulation of PBMCs
Cells were stimulated with complete medium alone or with 400 ng/ml soluble anti-CD3 clone OKT3 (eBioscience), 1 µg/ml anti-CD28 clone CD28.6 (eBioscience), 10 ng/ml IFN-α (Schering-Plough), 10 ng/ml IFN-γ (Miltenyi Biotec), 10 ng/ml IL-15 (PeproTech), 25 ng/ml IL-10 (R&D Systems), 1 ng/ml TGF-β (PeproTech), and a pro-inflammatory cytokine cocktail consisting of 10 ng/ml IL-1β (Miltenyi Biotec), 10 ng/ml IL-6 (Miltenyi Biotec) and 2.5 ng/ml tumor necrosis factor (TNF) (R&D Systems). Experiments were performed in 4 wells per condition and repeated at least three times. All cells were cultured at 37°C with 5% CO2.
On day 2 and 7, cells were pooled and stained with anti-CD3 FITC clone UCHT1, anti-CD8 PE clone B9.11 (both from Beckman Coulter), anti-CD4 APC-H7 clone SK3 (BD Biosciences), anti-PD-1 PerCPeFluor 710 clone eBioJ105, and anti-TIM-3 APC clone F38-2E2 (both from eBiosciences). Cells were measured using FACSCanto II and analyzed by FACSDiva software (both from BD Biosciences).
Study approval
A written informed consent was signed by the healthy volunteers who agreed to participate, and data was anonymized. Ethical approval was obtained from the ethical review board of the Erasmus MC.
Statistical analysis
Statistical analysis was performed using the nonpaired, nonparametric test (Mann-Whitney test; GraphPad Prism software, GraphPad Software Inc., La Jolla, CA). P values < 0.05 were considered statistically significant.
Results
PD-1 expression on CD4+ and CD8+ T cells following in vitro cell stimulation
In order to investigate the regulation of inhibitory receptors PD-1 and TIM-3, PBMCs from healthy donors were stimulated with various stimulation conditions. The frequency of PD-1+ and TIM-3+ within CD4+ and CD8+ T cells were analyzed following 2 and 7 days of total PBMC stimulation and compared with the frequency of positive cells at baseline (day 0).
Gating strategy to identify CD4+ and CD8+ T cells after culture with medium or anti-CD3 was shown in Figure 1A. Representative figures to identify PD-1+ expressing CD8+ and CD4+ T cells were shown in Figure 1B and 1C, respectively. The mean frequency of PD-1+ expressing CD8+ T cells at baseline (day 0) was 14.2% (ranging from 8.5% until 20.1%). PBMCs stimulated with IL-15 demonstrated increased frequency of PD-1+ CD8+ T cells (the mean frequencies of PD-1+ CD8+ T cells were 10.1%; 13.4%; and 21.7% at day 0, 2, and 7 respectively; P < 0.05 for comparison between day 0 and day 7) (Figure 2A). For other stimuli, including IFN-α, IFN-γ, IL-10, TGF-β, and combination of IL-1β, IL-6 and TNF, no significant differences were observed (Figure 2A). Analysis on CD4+ T cell populations demonstrated similar findings, in which only IL-15 significantly induced the expression of PD-1 (Figure 2A).
Next, we combined those cytokines with anti-CD3 stimulation to examine the influence of those cytokines during anti-CD3-mediated T cell activation [27]. Combination of anti-CD3 and IL-15 stimulation resulted in a trend towards increased frequency of PD-1+ CD8+ T cells compared to anti-CD3 stimulation alone at day 2, but not at day 7 (Figure 2B). The differences between mean frequency of PD-1+ CD8+ T cells at day 2 and day 0 were 28.0% for anti-CD3 versus 60.8% for combined anti-CD3 and IL-15 stimulation (P < 0.01). There was a marked decrease of PD-1+ CD8+ T cells (14.7%) at day 7 with anti-CD3 and IL-15 stimulation (Figure 2B and Supplementary Figure 1). For CD4+ T cells, we found a similar trend only at day 2, although the difference was not significant. The differences between mean frequency of PD-1+ CD4+ T cells at day 2 and day 0 were 28.3% for anti-CD3 versus 52.0% for combined anti-CD3 and IL-15 stimulation (Figure 2B and Supplementary Figure 1).
Interestingly, there was a trend towards lower induction of PD-1 expression with anti-CD3 and IL-10 stimulation as compared to anti-CD3 stimulation alone. The differences between mean frequency of PD-1+ CD8+ T cells at day 2 and day 0 were 28.0% for anti-CD3 versus 12.6% for combined anti-CD3 and IL-10 stimulation (P = n.s.). Between day 7 and day 0, the differences in mean frequency were 37.4% for anti-CD3 and 24.1% for combined anti-CD3 and IL-10 stimulation (P = n.s). We also found a trend towards lower induction of PD-1 expression with anti-CD3 and IL-10 stimulation compared to anti-CD3 stimulation alone in CD4+ T cells. The differences between mean frequency of PD-1+ CD4+ T cells at day 2 and day 0 were 28.3% for anti-CD3 versus 12.5% for combined anti-CD3 and IL-10 stimulation (P = n.s). Between day 7 and day 0, the differences in mean frequency were 50.6% for anti-CD3 and 15.3% for combined anti-CD3 and IL-10 stimulation (P < 0.01). Combination of anti-CD3 and other stimuli were not able to modulate PD-1 expression on both CD4+ and CD8+ T cells (Figure 2B).
TIM-3 expression on CD4+ and CD8+ T cells following in vitro cell stimulation
Representative figures to identify TIM-3+ expressing CD8+ and CD4+ T cells were shown in Figure 3A and 3B, respectively. In contrast to PD-1, the mean frequency of TIM-3+ expressing CD8+ T cells at baseline was very low (0.6%, ranging from 0.1% until 1.1%) (Figures 3A and 4A). Similar with PD-1 expression, only IL-15 stimulation was able to induce the expression of TIM-3 on CD8+ T cells (the mean frequencies of TIM-3+ CD8+ T cells were 0.4%; 14.9%; and 42.8% at day 0, 2, and 7 respectively; P < 0.05) (Figure 4A). For other stimuli, including IFN-α, IFN-γ, IL-10, TGF-β, and combination of IL-1β, IL-6 and TNF, no significant differences of TIM-3 inductions were observed (Figure 4A). Similarly, analysis on CD4+ T cell populations demonstrated that only IL-15 induced the expression of TIM-3 (Figure 4A).
We then combined those cytokines with anti-CD3 stimulation to examine the influence of those various cytokines during anti-CD3-mediated T cell activation [27]. Combination of anti-CD3 and IL-15 stimulation showed a trend towards increased up-regulation of TIM-3+ CD8+ T cells compared to anti-CD3 stimulation alone (Figure 4B). The differences between mean frequency of TIM-3+ CD8+ T cells at day 2 and day 0 were 23.2% for anti-CD3 stimulation versus 58.7% for combined anti-CD3 and IL-15 stimulation (P < 0.01). Between day 7 and day 0, the differences in mean frequency of TIM-3+ CD8+ T cells were 67.0% for anti-CD3 and 95.4% for the combination of anti-CD3 and IL-15 stimulation (P < 0.01) (Figure 4B and Supplementary Figure 1). Similar with PD-1 expression, there was a trend towards lower induction of TIM-3 expression with combination of anti-CD3 and IL-10 stimulation as compared to anti-CD3 stimulation alone. For combination of anti-CD3 and IL-10 stimulation, the difference between mean frequency of TIM-3+ CD8+ T cells at day 2 and day 0 was 11.7% (P < 0.05) and at day 7 and day 0 was 33.5% (P < 0.01) (Figure 4B and Supplementary Figure 1).
We obtained similar trends on TIM-3 induction CD4+ T cells following combined stimulation with anti-CD3. We found that combination of anti-CD3 and IL-15 stimulation resulted in a trend towards increased frequency of TIM-3+ CD4+ T cells compared to anti-CD3 stimulation alone. The differences between mean frequency of TIM-3+ CD4+ T cells at day 2 and day 0 were 9.9% for anti-CD3 stimulation versus 26.3% for combined anti-CD3 and IL-15 stimulation (P < 0.01). Between day 7 and day 0, the differences in mean frequency of TIM-3+ CD4+ T cells were 30.8% for anti-CD3 and 73.2% for the combination of anti-CD3 and IL-15 stimulation (P < 0.01) (Figure 4B and Supplementary Figure 1). We also found a trend towards lower induction of TIM-3 expression with anti-CD3 and IL-10 stimulation compared to anti-CD3 stimulation alone. For combination of anti-CD3 and IL-10 stimulation, the difference between mean frequency of TIM-3+ CD4+ T cells at day 2 and day 0 was 4.2% (P < 0.01) and at day 7 and day 0 was 7.5% (P < 0.01) (Figure 4B and Supplementary Figure 1). Combination of anti-CD3 and other stimuli were not able to modulate TIM-3 expression on CD4+ T cells compared to anti-CD3 stimulation alone (Figure 4B).
Differential inductions of PD-1 and TIM-3 expression on CD4+ and CD8+ T cells
Since anti-CD3 and IL-15 stimulation induced the expression of PD-1 and TIM-3 expression on both CD4+ and CD8+ T cells, we determined whether any difference exists in their inductions levels. PD-1+ expression showed a comparable induction between CD4+ and CD8+ T cells at day 2 and at day 7 following anti-CD3 stimulation [the mean induction of PD-1+ after correction for the background in the medium condition were 31.9% and 33.5% at day 2 (P = n.s) and 44.4% and 41.0% at day 7 (P = n.s) for CD4+ and CD8+ T cells, respectively] (Figure 5A). A similar trend was observed with IL-15 stimulation at day 7, but the difference was not significant (Figure 5B). For combined anti-CD3 and IL-15 stimulation, there was a similar induction of PD-1 on CD4+ and CD8+ T cells at day 2. However, at day 7 post stimulation, the induction level was notably higher in CD4+ compared to CD8+ T cells. This was due to considerable downregulation of PD-1 on CD8+ T cells at day 7 [the mean induction of PD-1+ 43.3% and 14.7% at day 7 (P < 0.05) for CD4+ and CD8+ T cells, respectively] (Figure 5C).
For TIM-3 induction, there was a significantly increased frequency of TIM-3+ on CD8+ T cells compared to CD4+ T cells both at day 2 and day 7 following stimulation with anti-CD3 [the mean frequencies of TIM-3+ after correction for the background in the medium condition were 10.0% and 23.5% at day 2 (P < 0.001) and 26.4% and 65.4% at day 7 (P < 0.001) for CD4+ and CD8+ T cells, respectively] (Figure 5A). Similar findings were observed with IL-15 stimulation and also combined anti-CD3 and IL-15 stimulation (Figure 5B and 5C).
Discussion
Understanding regulation of T cell function is highly important to delineate T cell response during viral infections as well as in cancer. These responses can be manipulated to develop immune-based therapy that has currently been used in cancer treatment. Our results demonstrated that of the separate cytokines studied, only IL-15 was found to induce expression of PD-1 and TIM-3 on T cells. For TIM-3 expression, this induction was more significant on CD8+ T cells than on CD4+ T cells. Our study, therefore, provide a basis for understanding T cell function by examining the regulation of inhibitory receptor expressions PD-1 and TIM-3.
In order to investigate the regulation of inhibitory receptors PD-1 and TIM-3, we selected several stimulation conditions for different reasons. IFN-α and IFN-γ have been reported to induce up-regulation of PD-1 or TIM-3 ligands (PD-L1 and galectin-9 [gal-9], respectively) [28-31]. In addition, IFN-α has been used in the clinic for chronic HBV and HCV therapy [2,32]. However, it is unknown whether IFN-α and IFN-γ can modulate PD-1 and TIM-3 expression. IL-10 and TGF-β are two inhibitory cytokines that negatively regulate T cell function in chronic HBV and HCV infections [33]. Whether these cytokines exert their suppressive effects in part by inducing inhibitory receptor expression on T cells have not been investigated yet. PD-1 and TIM-3 are highly expressed in acute hepatitis B and C patients. It is unknown whether pro-inflammatory cytokines induced during acute infection, such as IL-1β, IL-6 and TNF, can influence the expression of PD-1 and TIM-3. Since it is known that IL-15 induces T cell expansion [34], we were also interested to see whether IL-15 could up-regulate inhibitory receptor molecule expression as part of a negative feedback mechanism.
Understanding T cell immunity in chonic viral infections is highly important to comprehend pathogenesis of these high burden diseases [4]. Our study contributes to further understanding the regulation of T cell inhibitory receptors PD-1 and TIM-3. We demonstrate that PD-1 and TIM-3 can be up-regulated following polyclonal (anti-CD3) and cytokine (IL-15) stimulation, suggesting their role during T cell activation. Interestingly, co-stimulation through anti-CD28 was not able to induce expression of PD-1 and TIM-3. In addition, pro-inflammatory cytokines, such as IL-1β, IL-6 and TNF, which are normally enriched in acute inflammatory states, did not modulate PD-1 and TIM-3 expression.
It is hypothesized that induction of PD-1 and TIM-3 expression during T cell activation may be necessary to inhibit excessive activation of naïve T cells. Indeed, it has been shown that blockade of TIM-3 during in vitro CD4+ T cell stimulation with anti-CD3 and anti-CD28 increased the production of several cytokines, such as IL-2, IL-6, IL-17 and IFN-γ [35]. Two inhibitory cytokines investigated in our study, IL-10 and TGF-β, were unable to induce PD-1 and TIM-3 expression. However, combination of anti-CD3 and IL-10 stimulation reduced the mean frequency of PD-1+ and TIM-3+ T cells compared to anti-CD3 stimulation alone. This finding is consistent with the direct or indirect effects of IL-10 to inhibit T cell activation process [36]. Anti-viral cytokines IFN-α and IFN-γ had no effect on PD-1 and TIM-3 expression. Therefore, it seems that up-regulation of PD-L1 and gal-9 by IFN-α and IFN-γ is one of the mechanisms to prevent excessive host damage in inflamed tissues [28-31]. The effects of IFN-α and IFN-γ on the expression of other inhibitory receptors should be further investigated to determine whether negative feedback mechanisms may exist through upregulation of inhibitory receptors on T cells.
The only cytokine investigated in this study which was able to induce expression of PD-1 and TIM-3 is IL-15. IL-15 is a T cell growth factor required for proliferation and maintenance of naïve and memory T cell pools [37,38]. Mechanistically, IL-15 triggers multiple downstream signaling pathways resulting in decreased apoptosis and enhanced cell growth, activation, and migration of T cells and innate immune cells, including natural killer (NK) cells [39]. Here, IL-15 stimulation alone was sufficient to induce expression of PD-1 and TIM-3 on T cells. This observation could also be mediated by the effects of IL-15 on other innate immune cells which then influence T cells. This possibility was because of the use of PBMC in our study [39]. In addition, T cells stimulated with anti-CD3 and IL-15 together had higher PD-1 and TIM-3 expression compared to anti-CD3 stimulation alone, suggesting that these two pathways can function in a synergistic manner. It suggests that IL-15 may negatively modulate the survival of T cells by inducing PD-1 and TIM-3 expression since PD-1+ and TIM-3+ T cells are less functional in producing cytokines and are more susceptible to apoptosis [40,41]. Indeed, there was a significant decrease of PD-1+ CD8+ T cells at day 7 with anti-CD3 and IL-15 stimulation (Figure 2B and Supplementary Figure 1), which might be the result of excessive stimulation of T cells or apoptosis of PD-1 expressing cells at day 7.
The finding that antigen-independent stimulation through IL-2, IL-7 and IL-15 can induce PD-1 and TIM-3 expression [41,42] may partially explain why the frequency of PD-1+ and TIM-3+ is increased not only on virus-specific T cells but also on total T cell population in chronic HBV and HCV patients as compared to normal individuals [19,43-45]; since these cytokines may increase in chronic inflammatory state. IL-15 can be used as a vaccine adjuvant to improve immunity againts many pathogens [38]. IL-15 has also been tested to reactivate exhausted T cells during chronic simian immunodefiency virus (SIV) infection in macaques [46] and is considered as cytokine therapy in chronic HIV patients to boost HIV-specific T cells [37]. Considering the effect of IL-15 on PD-1 and TIM-3 induction and also the fact that exhausted HIV-specific T cells have increased expression of PD-1 and TIM-3 [47,48], it should be considered that this approach is preceded with blockade of inhibitory receptor molecules to more optimally restore T cell function [49].
Conclusions
One limitation of our study that we used PBMC collected from healthy individuals. Thus, findings of this study might be different in PBMC collected from chronically infected HBV and HCV patients. In conclusion, our study demonstrated that PD-1 and TIM-3 were induced via polyclonal (anti-CD3) and cytokine (IL-15) stimulation. We observed a significantly increased up-regulation of TIM-3 on CD8+ T cells compared to CD4+ T cells. Thus, our study contributes to further understanding the expression regulation of T cell exhaustion markers PD-1 and TIM-3.
Acknowledgements
M. S. H. is financially supported by the Directorate General of Higher Education, Ministry of Education and Culture, Indonesia (2011-2013).
Disclosure of conflict of interest
None.
Abbreviations
- CTLA-4
T-lymphocyte associated protein 4
- gal-9
galectin-9
- HBV
hepatitis B virus
- HCV
hepatitis C virus
- HIV
human immunodeficiency virus
- IL
interleukin
- LCMV
lymphocytic choriomeningitis virus
- NK
natural killer
- NUC
nucleos(t)ide analogs
- PBMCs
peripheral blood mononuclear cells
- PD-1
programmed death 1
- PEG-IFN-α
pegylated interferon-α
- SIV
simian immunodefiency virus
- TGF-β
transforming growth factor β
- TIM-3
T cell immunoglobulin mucin domain-containing molecule 3
- Treg
regulatory T cells
Supporting Information
References
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