Abstract
Policymakers make decisions about COVID-19 management in the face of considerable uncertainty. We convened multiple modeling teams to evaluate reopening strategies for a mid-sized county in the United States, in a novel process designed to fully express scientific uncertainty while reducing linguistic uncertainty and cognitive biases. For the scenarios considered, the consensus from 17 distinct models was that a second outbreak will occur within 6 months of reopening, unless schools and non-essential workplaces remain closed. Up to half the population could be infected with full workplace reopening; non-essential business closures reduced median cumulative infections by 82%. Intermediate reopening interventions identified no win-win situations; there was a trade-off between public health outcomes and duration of workplace closures. Aggregate results captured twice the uncertainty of individual models, providing a more complete expression of risk for decision-making purposes.
Uncertainty is pervasive during any emerging infectious disease outbreak. There is limited scientific understanding about epidemiological processes, public health and economic goals may be varied, unclear, conflicting, or not stated at all, and the potential effects of possible interventions are uncertain given the novel circumstances. As illustrated by recent outbreaks of Ebola and Zika viruses, and the COVID-19 pandemic, the complexity of an outbreak motivates quantitative modeling, but a profusion of models often produces conflicting forecasts, projections and intervention recommendations (Thomson et al. 2006, Li et al. 2017, Viboud et al. 2018, Carlson et al. 2018, Kobres et al. 2019, Ray et al. submitted). This poses a challenge for decision makers. To support sound, evidence-based decision making, we believe it is critical to develop an efficient framework for collaborative modeling and for synthesizing results and recommendations from ensemble modeling efforts (Tetlock et al. 2014, den Boon et al. 2019).
We previously proposed a method to harness the power of multiple independent research groups and models (Shea et al. 2020) by drawing from tools in decision analysis (Gregory et al. 2012), expert elicitation (Murphy et al. 1998, Burgman 2015, Mukherjee 2015, Tetlock and Gardner 2016), and model aggregation for decision making (Probert et al. 2016, Li et al. 2017). Our approach is designed to reduce unwanted cognitive biases and linguistic uncertainty (e.g., about the interpretation of the problem setting), while characterizing and preserving genuine scientific uncertainty (e.g., about epidemiological processes or parameters, or intervention efficacy, given limited data) that is relevant to policy development and decision making. In this framework, insights can be shared across modeling groups to inform the collective projections, while retaining the perspective of individual groups. The process involves multiple steps (Fig. 1), including two rounds of modeling with an intervening structured discussion to eliminate unwanted biases and uncertainty (including semantic or linguistic uncertainty), increase consistency in modeling of interventions, share critical insights, and generate a comprehensive picture of relevant uncertainty (loop B in Fig. 1). The projections from the second round of modeling are then used to generate aggregate results under different interventions that encapsulate scientific uncertainty about epidemiological processes and management interventions (Li et al. 2019). We stress that this process is designed primarily to inform decision making, rather than to provide quantitative projections of epidemic trajectory (as in ongoing forecasting challenges; Ray et al. submitted), though such results are also obtained. The multi-model, multi-step process is expected to generate better calibrated projections than individual models. That is, the aggregate distributional forecast will be more consistent with future observations than individual forecasts. More importantly, this process is also expected to produce more robust insights about the ranking of intervention options that improve management outcomes. The COVID-19 pandemic offers a unique opportunity to apply this structured framework.
Based on this framework, we launched the Multiple Models for Outbreak Decision Support (MMODS) project to guide COVID-19 management in the United States, focusing on a generic mid-sized county of approximately 100,000 people that experienced a small outbreak in late April and early May. Control of COVID-19 in such populations has received relatively little attention but is relevant to decisions faced by state and local officials. We solicited participation from multiple modeling groups via the Models of Infectious Disease Agent Study (MIDAS) network and via existing COVID-19 modeling collaborations with the U.S. Centers for Disease Control and Prevention (CDC) to project outcomes for five objectives related to SARS-CoV-2 incidence, hospital resources, and local workplace and school restrictions over a 6-month period (see Materials and Methods for details). We presented information for a generic, mid-sized county with age structure representative of the U.S. population, that pre-emptively initiated, and adhered to, stringent social distancing guidelines (i.e., full stay-at-home orders with workplace and school closures) until May 15, 2020 (so that the 6-month prediction period ran from May 15-November 15, 2020). We provided the modeling groups with baseline epidemiological and intervention information for the county (see Supplemental Material [SM] File 2 containing provided data); some groups incorporated additional data (see SM Table 1). We considered four possible interventions that mirror the responses of different countries, states, and counties to COVID-19. The four interventions addressed decreasingly stringent non-essential workplace re-openings while assuming schools remained closed, and consisted of (1) closure throughout the 6-month prediction period (“closed” intervention), (2) re-opening when cases decline below 5 percent of the peak daily caseload, (3) re-opening two weeks after peak daily caseload, and (4) immediate re-opening (on May 15, “open” intervention). Each modeling group provided a probability distribution of health and economic outcomes for each intervention, from which aggregate results were generated. After the first round of projections, the aggregate results and anonymized individual results were shared with all groups and a discussion was held to clarify terminology, share insights, and discuss differences. Following the discussion, the groups provided updated projections, from which the final results were generated.
Aggregate results anticipate outbreaks for any level of reopening
Sixteen modeling groups participated in this study, contributing 17 distinct models with a variety of structures and assumptions (see Materials and Methods, and SM Table 1) and two rounds of projections. Results are presented using projections from the second round only. The aggregate projections showed a consistent ranking of intervention performance (SM Figs. 1 and 8 and SM Video 1) across the four public health outcomes (cumulative infections, cumulative deaths, peak hospitalization, and probability of an outbreak), and a strong trade-off between public health and economic outcomes (number of days with non-essential workplaces closed over the 6-month period, Fig. 2). For all of the public health-related outcomes, the best intervention was to keep non-essential workplaces closed for the duration of the period investigated. Reopening at 5% of the peak and reopening 2 weeks after the peak were ranked second and third, respectively. Opening fully and immediately led to the greatest public health burden. Keeping restrictive measures in place for 6 months reduced median cumulative infections by 82%, from a median of 48,100 (48.1% of the county population) in the open intervention to 8,527 in the closed intervention; the 5-percent and 2-week interventions reduced the cumulative infection by 66% and 46%, respectively, relative to the open intervention. The reduction in cumulative deaths followed a similar pattern (Fig. 2). Peak hospitalizations ranked the interventions in the same order as cumulative cases and deaths, but the largest decrease was achieved when going from the open intervention to the 2-week intervention.
We asked the modeling groups to estimate the probability of an outbreak after May 15 (defined as a 7-day moving average of reported cases greater than 10 per day). Even under the fully closed intervention, the probability of an outbreak was high (aggregate median, 71%). The median probability of an outbreak increased to 100% for all other interventions. Even relatively stringent re-opening guidelines were insufficient to guarantee success; complete cessation of community spread of the disease was unlikely even with long-term non-essential workplace closure (although widespread transmission has been pre-empted in some settings, such as New Zealand and Taiwan, with high compliance to a package of social distancing measures and travel restrictions). Either additional stay-at-home orders would be required, or other non-pharmaceutical interventions (e.g., testing, contact tracing and isolation, or wearing masks) or pharmaceutical interventions (e.g., vaccination) would be needed to stop transmission while allowing workplace re-opening.
Our results allowed us to examine trade-offs between economic and public health outcomes; how much economic activity might the decision maker be willing to forgo to gain public health improvements of a given magnitude? The number of days of non-essential workplace closure is a coarse and incomplete measure of short-term economic impact, but it highlights an important trade-off. The ranking of interventions in relation to projected days closed was reversed in comparison to the ranking for the public health outcomes (Fig. 2): under the closed intervention, non-essential workplaces were closed for 184 days (May 15 to November 15); under the 5-percent and 2-week interventions, non-essential workplaces were closed for a median of 129 and 96 days (a reduction of 29% and 48%), respectively. We had hypothesized that the 5-percent intervention might be an attractive alternative relative to remaining closed, permitting a reduction in days closed with little or no difference in public health outcomes. However, cumulative infections, deaths, and peak hospitalizations were further reduced under the closed intervention relative to the 5-percent intervention by 48% (8,527 vs. 16,510), 39% (73 vs. 119), and 40% (36 vs. 60), respectively (Fig. 2). This starkly illustrates the tensions between economic and public health goals seen worldwide and suggests that strategies that only consider the timing of re-opening, or focus on a single type of intervention, may not be nuanced enough to manage these trade-offs.
Benefits of the structured MMODS process
The MMODS process outlined here is focused on decision outcomes and, unless a rapid decision is required (necessitating the interim use of round 1 results), only round 2 results are considered. However, as this is a new approach to ensemble decision making for outbreak control (Shea et al. 2020), results about the changes between the first and second rounds are pertinent. The group discussion after the first round identified numerous sources of linguistic uncertainty arising from different interpretations of the objectives and the nature of interventions (for example, the definition of ‘death’; see SM on Resolution of Linguistic Uncertainty for details). Clear guidelines developed during and after the group meeting removed this uncertainty from round 2 projections, improving the comparability of intervention rankings across models. The discussion also motivated the modification of one reopening intervention (Fig.1 loop A; see Materials and Methods). The discussion highlighted additional sources of available data, shared critical insights with all groups, and encouraged a broader expression of scientific uncertainty (including a discussion of different methods used for incorporating such uncertainty), all while maintaining anonymity of results to avoid pressure to conform where true scientific disagreement persisted. As linguistic uncertainty was decreased at the same time as modeling groups were encouraged to more fully express their remaining uncertainty, there is no expectation of directionality in the relative magnitude of uncertainty expressed by models in the two rounds of projections. However, projections of days closed in the two extreme (open and closed) interventions were highly variable in round 1, but are entirely consistent in round 2 (compare Fig. 3 for open and closed interventions, top and bottom panels in column 5, with SM Fig. 9), demonstrating the complete removal of linguistic uncertainty that would have confounded results.
Individual models are consistent in ranking of interventions, but projections are variable in magnitude and uncertainty
The rankings of interventions from the individual models are generally consistent with each other and with the aggregate results (Fig. 3 and SM Video 1); however, there are some interesting differences. Three models ranked the closed and 5-percent interventions as identical for several metrics; 6 groups reported that for at least some simulations the 5-percent reopening criterion was never met in the 6-month period. Two models ranked the 5-percent intervention as better than the closed intervention based on the medians of health outcomes; both models had wide priors on parameters governing compliance with interventions. Three of the 17 models ranked the 5-percent intervention worse than the 2-week intervention for public health measures (Fig. 4A i-iii), a result that was driven by different timing in the triggering of re-opening (Fig. 4A iv). Another notable result is that the ranking of the 2-week intervention for the peak hospitalization metric spanned the gamut from worst rank (in submission M) to first-tied rank (in submission A) (Fig. 3). Otherwise, rankings were remarkably consistent overall.
Importantly, the individual models display considerable variation in terms of the magnitude and uncertainty of projections (Fig. 3). Reliance on a single model, rather than an ensemble, is inherently less reliable for providing insights on the magnitude of differences between interventions, even if the ranking of interventions is relatively robust (SM Fig. 1). In fact, there are numerous examples where even the 90% prediction intervals (PIs) do not overlap for different models in the same intervention scenario (for example, see cumulative infections for the open intervention, where all models rank the intervention as worst, but the range of the population infected nearly covers 0 to 100%). The differences in model structure, parameterization, and assumptions that the groups were asked to provide did not explain differences in the results (see Materials and Methods and SM Tables 1, 2, Figs. 15, 16); such an evaluation, facilitated by a thorough model description checklist, would be impossible with individual experts. This pattern of consistent rankings across models despite a wide variation in projected outcomes was also seen for Ebola (Li et al. 2017). Estimating the relative difference in an outcome across different courses of action (a decision-making task) is almost always more straightforward than estimating an absolute value (a prediction task), as the former simply involves a rearrangement of ordinal rankings, while the latter has to account for many more factors.
Aggregate results provide an integrated expression of uncertainty
It is challenging for any individual model alone to fully account for uncertainty. The aggregate results provided a more comprehensive measure of uncertainty by integrating over the individual team assumptions about disease dynamics, population behavior, public health surveillance, and the effectiveness of interventions. Deploying multiple models in parallel also speeds up the process of exploring relevant uncertainty. Individual models tended to capture less than 50% of the uncertainty of the aggregate (as measured by the relative interquartile range, IQR, Fig. 5). As a result, individual models were generally more confident than the ensemble, echoing findings from studies of expert judgment that individual experts tend to be over-confident (Teigen and Jørgensen 2005). The importance of a well-calibrated expression of uncertainty in projections can be seen in the context of hospital planning, and the risk tolerance a hospital administrator needs to contemplate.
For example, if the county has 200 hospital beds, while median peak hospitalization is comparable for the remain-closed and 2-week interventions, the 2-week intervention was three times as likely to exceed capacity as the remain-closed intervention (34% vs. 11% chance of exceedance based on the aggregate results, Fig. 2). These risk estimates allow the administrator to gauge how much to prepare for exceedance. If a local official or hospital administrator, however, had to rely on only a single model to estimate the exceedance risk, they may mis-estimate the risk and possibly over- or under-prepare.
Model projections are comparable with real-world data
We identified 66 mid-sized (90,000 to 110,000 people) US counties that approximated the profile of the setting presented to the modeling groups and that have implemented and followed a closed intervention (e.g., a stay-at-home order) through October 15, 2020 (Dong et al. 2020) (see SM section: Comparison of county data with aggregate model results and MMODS code repository). The distribution of reported deaths due to COVID-19 in the closed counties (median 31; 50% IQR, 16 to 56) was comparable to the aggregate projection of total deaths (both reported and undetected, median 73; 50% IQR, 12 to 228). The confidence intervals for projected deaths were wider than the observed distributions, which is expected as the observations represent a subset of the possible paths that the outbreak might have taken (see SM Figs. 1, 3, 13 and text in SM section: Comparison of county data with aggregate model results). This analysis will be updated and posted to the SM after November 15, 2020 (once the prediction period is complete). If the MMODS decision process were used to guide decision making (Fig. 1, loop C), there is the opportunity to weight models in the ensemble as we learn about their performance, or for modeling teams to learn from data and improve their models in an adaptive management framework (Shea et al. 2014, Probert et al. 2018, Shea et al. 2020a, b).
Discussion
The abundance of uncertainty that accompanies pathogen emergence presents a uniquely difficult challenge for public health decision making. The multi-stage, multi-model process revealed some important epidemiological and policy insights about county re-openings. The aggregate results, and most individual models, ranked the interventions consistently for any given objective. While more stringent reopening rules generally performed better, public health strategies designed only around one-time re-opening guidelines were inadequate to control the COVID-19 epidemic at the county level, as reflected in the resurgence of COVID-19 over the summer of 2020 in the United States. Our results reinforce the importance of coupling these strategies with other pharmaceutical, non-pharmaceutical, and behavioral interventions (e.g. vaccine deployment, mask usage, and social distancing).
The descriptions of the objectives and interventions for this elicitation were motivated by public discussions and guidance issued by federal and state governments in April 2020. However, concepts presented in colloquial language can be difficult to precisely define mathematically. All groups found that the initial wording in the guidance provided was difficult to interpret and model, suggesting it could invite considerable discretion in implementation. For example, the wording on reopening ‘2 weeks after peak’ engendered considerable confusion in the first round of modeling. How is a peak defined? Is it in reported deaths or cases? Is it measured on a daily or a moving-average basis? Likewise, how should a model determine whether 2 weeks have passed since the peak? A continuous monotonic decline was never seen; should a moving average be used? And, if so, for 7 or 14 days? We provided a clear definition of such terms for the second round of projections (see Materials and Methods for definitions, and SM on Resolution of Linguistic Uncertainty for discussion). Even so, there was still considerable variation across modeling groups in how these openings were triggered, in part because the triggering events were sensitive to how daily variation in the projections was handled (Fig. 4B). More precisely worded guidelines, and crucially, clear lines of communication and open collaboration between decision makers and modelers (Fig. 1, loop A), could reduce confusion, and would permit consistent evaluation and application of management interventions. Our process illuminated this issue and created a well-defined and timely opportunity to resolve it, ensuring more comparable results on which to base decisions.
Balancing public health outcomes and economic considerations is an important aspect of pandemic decision making, but needs a more nuanced treatment, particularly on the economic side. If we compare each of our four interventions to a hypothetical “no disease” scenario, we can identify four broad groups of costs from multiple perspectives: (a) financial costs caused by the disease itself (e.g., reduced economic output due to absence from work due either to illness or voluntary isolation, direct and indirect costs of medical treatment, or costs associated with funerals); (b) non-financial costs caused by the disease itself (e.g., mortality, morbidity, long-term health impacts); (c) financial costs caused by the strategic response to the disease (e.g., reduced economic output due to a lockdown, costs of monitoring and enforcing a lockdown or of quarantining incoming travelers) or by individual responses that go beyond local policy; and (d) non-financial costs caused by strategic or personal responses (e.g., mental health challenges due to isolation, forgoing preventive medical care such as routine childhood vaccinations, relationship stressors, reduced access to opportunities for recreation). There may also be economic benefits associated with the mitigation activities. For example, some firms have found that having staff work from home can increase efficiency and reduce operational costs (OECD 2020), which could have ongoing benefits. In principle, the optimal strategy would be that which minimizes the sum of all these costs, less any benefits. Our analysis does not quantify all of these costs and benefits but does provide evidence that could be used as key inputs to a comprehensive economic analysis. Feedback to decision makers from this process may lead to refined or multi-criteria objectives (via loop A in Fig. 1).
Running the models twice, with an intervening discussion, is essential. In our elicitation, we removed different interpretations of terminology that would have confounded the ensemble results. For example, the trade-off between days closed and public health outcomes would have been obscured by linguistic uncertainty surrounding “closure” (see SM Fig. 9). The importance of consultation and open collaboration between decision makers and modelers (Fig. 1, loop A) to clarify objectives and interventions is also strongly supported. Initially it might seem that adding a second step would delay decision-making; this is a valid concern in time-sensitive circumstances. In an emergency, results from round 1 could be used to inform an interim decision. However, in practice, the two-round process generally can be more efficient. Clarification often happens on an ad hoc basis anyway as, despite best efforts, it is fundamentally difficult to anticipate everything that groups might interpret differently a priori (though it will be possible to learn and streamline across exercises), and uncertainties often arise as models are developed and implemented. Our process is deliberate in explicitly planning for and appropriately managing this process, so that all groups are equally informed and use the same interpretations. Formally building the discussion phase into the modeling and decision-making process manages decision-maker expectations and saves time in the long run, by avoiding multiple, unplanned reassessments. This would be particularly valuable in situations where the same models are used to make repeated decisions. Modeling teams also commented that they found the well-defined structure in Fig. 1 to be valuable. We further note that resolution of unwanted linguistic uncertainty via facilitated group discussions would likely also improve forecasts outside the decision-making setting.
Multiple model approaches such as MMODS come with challenges, not least of which is coordinating multiple, disparate groups’ efforts. Participating modeling groups refocused their efforts on COVID-19 during the past year, and contributed considerable, mostly unfunded, time and effort (see SM Table 1) to participate in this project on a voluntary basis. Not all models were initially structured to address the questions or interventions we considered, and the methods for handling uncertainty were novel for some of the groups. Additionally, we found some trade-offs were necessary. A number of the models (e.g., those with substantial simulation time, or requiring extensive changes to implement new interventions) could not assess the impact of many distinct interventions, so we limited our study to four workplace-related interventions to encourage participation. However, this need not constrain the number of interventions for critical decisions and situations; it is possible to augment computational resources, or different subsets of the contributing models could assess different subsets of interventions. Most of these challenges could be addressed via planning and preparedness efforts to build a community of epidemiological and decision-making experts in anticipation of need (Drake 2020, National Academies of Sciences, Engineering, and Medicine 2020, Rivers et al. 2020). The success of future collaborative efforts will depend on the sustained availability of financial and logistical support, for both the coordination of collaborations, and for the individual modeling groups. Such coordinated efforts could then provide rapid, informed support to decision makers at critical junctures, to enable effective decision making in the face of uncertainty, as well as the opportunity for rapid, focused learning through monitoring and model-weight updating (Shea et al. 2014).
Our project is the first open study to use multiple models, instead of multiple individual experts, in a structured expert elicitation process focused on real-time disease mitigation decisions. As with well-designed expert elicitations, using multiple models produces a more complete description of uncertainty and provides more robust projections to decision makers. While we have drawn from the expert elicitation literature (Runge et al. 2011, Burgman 2015) to design this process, more work is needed to optimize the approach (Shea et al. 2020a). For example, a key question that has not yet been addressed in model elicitations is whether an open call for participation or a curated set of established models produces better results. Both approaches (open participation and careful selection) are used with expert panels, but often rely on different analytical methods. Second, how many models are needed to produce stable and robust results? In individual expert judgment approaches, between 5 and 20 experts are recommended (Rowe and Wright 2001); however, it is not clear if the same guidance applies for models.
We have outlined these methods, and their benefits and challenges, for reopening decisions in mid-sized US counties facing the COVID-19 pandemic. However, this approach can be applied to a wide range of other settings or to other critical decisions, such as: when to reimpose or relax interventions in a sequence; context-dependent state- and country-level interventions (including in low- and middle-income countries where constraints and available resources may differ markedly on a case-by-case basis, e.g., Walker et al. 2020); where best to trial vaccines and drugs; how to prioritize testing; and how to optimize the roll-out of other medical interventions. In all cases, the MMODS approach demonstrated here could reduce unnecessary uncertainty in terminology and interpretation, better characterize the remaining scientific uncertainty, reduce bias and minimize the temptation to rapidly reach premature consensus. This approach can also be used for critical management decisions for endemic diseases, and for elimination and eradication planning, as well as in any non-epidemiological setting where models are used to inform decision making (e.g., Milner-Gulland and Shea 2017). We also stress that our approach encourages an integration of science and policy-making – efforts that are often separated to the detriment of public health outcomes when semantic uncertainties cannot be clarified and may thus interfere with success. Modelers intend their forecasts to ‘inform management decisions,’ yet the common separation of model outputs from the decision context increases the chance of misunderstandings and errors. Continued efforts to foster collaboration and streamline communication between modelers and decision makers, as well as to shift the focus from solely providing projections to evaluating proposed interventions, are essential steps towards effectively leveraging modeling efforts to inform decisions. Such advances will be essential to support real-time decision making on many critical problems.
Materials and Methods
We solicited participation from multiple modeling groups via the Models of Infectious Disease Agent Study (MIDAS) network and via working groups involving modelers and the U.S. Centers for Disease Control and Prevention (CDC) facilitated by the MIDAS Coordination Center at the end of May 2020. Information about the collaboration opportunity was communicated via conference calls and listservs. This activity was reviewed by CDC and was conducted consistent with applicable federal law and CDC policy (45 C.F.R. part 46, 21 C.F.R. part 56; 42 U.S.C. §241(d); 5 U.S.C. §552a; 44 U.S.C. §3501 et seq). Full information for the elicitation, including the setting, epidemiological data, and intervention descriptors was posted at a dedicated website at https://midasnetwork.us/mmods/ (including daily reported cases, deaths, mobility, and testing data, State of Emergency and stay-at-home orders, and age structure). The initial conditions for the forecasts included cumulative cases and deaths within the county on a daily basis from January 22 to May 15, 2020. As of May 15, the county had recorded 180 confirmed cases and 6 deaths due to COVID-19. Groups were also permitted to incorporate additional data sets, as they saw fit (e.g., national data on hospital, Intensive Care Unit and ventilator availability, household size data, and work, school, community, and home mixing data). We asked the modeling groups to assume that travel restrictions remained in place throughout (so that there was no international importation of cases and domestic importations were limited), and that there was no local contact tracing or isolation of infected individuals. We did not specify guidelines regarding mask use but specified that schools would remain closed through November 15 (just prior to the start of peak flu season). First round results were due on June 15, 2020 and the group discussion of preliminary results took place on June 24, 2020. Second round model results were due 12 July, 2020 and preliminary analyses of second round results were reported to the modeling groups and others on July 17, 2020.
The five objective metrics were: (1) cumulative number of infected individuals (May 15 to November 15); (2) cumulative number of COVID-related deaths over the same period; (3) peak hospitalizations during the period May 15 to November 15; (4) probability of a new local outbreak (more than 10 new reported cases per day); and (5) total number of days workplaces closed. The four interventions focused on strategies for re-opening non-essential workplaces, while assuming all involved schools remaining closed: (1) continue with current non-essential workplace closures at least through November 15 (“closed intervention”), (2) open non-essential workplaces when the number of new daily reported cases is at 5% of peak (“5-percent intervention”), (3) open non-essential workplaces two weeks after peak (“2-week intervention”), and (4) immediately relax all current restrictions on non-essential workplaces on May 15 (“open intervention”).
All objective-intervention combinations were assessed for feasibility in an in-house model prior to developing the elicitation. However, intervention (2), which was set at 1% in round 1, was identified as too restrictive (i.e., the condition was never met) by several models during the discussion, and therefore changed accordingly (i.e., modeling groups provided feedback on interventions as anticipated in Fig. 1 loop A). In a single-round elicitation such a situation would have effectively reduced the number of interventions examined overall, as the 1% trigger was essentially congruent with the fully-closed intervention.
For the 5-percent and 2-week interventions (interventions 2 and 3), following the resolution of linguistic uncertainty in the discussion (see SM: Resolution of linguistic uncertainty), we asked all groups to use the same metric and method for calculating the peak, acknowledging that this is only one of several metrics and methods that could be used to determine the peak. We chose a definition that could be implemented by a decision maker (as opposed to an omniscient approach). For both the 2-week and 5-percent interventions, all teams used the 7-day trailing moving average of the number of new daily reported cases (as opposed to all infections, which may or may not result in reported cases); the moving average smooths out noise due to reporting and low population size. Peak is then defined as the maximum 7-day moving average of daily reported cases. The trigger to open for the 2-week intervention is the first day for which the 7-day trailing moving average has been lower than the maximum for at least 14 days, and has shown a day-to-day decline in smoothed case data for at least 10 of the last 14 days (or, there have been 7 days without any new cases). The trigger to open for the 5-percent intervention is the first day for which the 7-day trailing moving average of the number of new daily reported cases drops below 5% of the peak after May 15th. Note that the peak that triggers a 2-week intervention may not be the same peak that triggers a 5-percent intervention (e.g., if there is a second peak that is larger than the first one).
Each group completed an extensive checklist (see SM File 3 and SM Table 1) for each round, to document a wide range of information on model structure and parameterization, the efficacy of interventions, additional setting information, assumptions and the associated uncertainty, as well as other sources of stochasticity (see SM Tables 1, 2 and SM Figs 15 to 17). Of the 17 models contributed by 16 scientific research groups, 10 were compartmental, 5 individual-based, 3 spatially explicit, 1 neural network, and 1 fractional order model. Eleven models included age-structure explicitly for some model components. Models handled uncertainty using different methods for different components (e.g., expert judgment, likelihood-based, or simulation methods). As part of the submission checklist, model groups were asked to provide an estimate of the number of Full Time Equivalent (FTE) hours allocated to their modelling effort, so we could assess the resources required to undertake such a multi-model effort. Modeling groups allocated an estimated 64 median FTE hours (Q1: 40 FTE hours, Q3: 100 FTE hours, Max: 1000 FTE hours). No groups dropped out between rounds. One group did not submit a model for round 1, but participated in the discussion and submitted to round 2.
We requested 100 quantiles for each model-objective-intervention combination such that tail probabilities for the 2nd and 98th quantiles were relatively stable (i.e., we requested the probability distribution for each outcome for each intervention, via the cumulative distribution function (CDF) in 100 quantiles). Requesting quantiles (rather than, for example, epidemiological curves) enables all types of different models to participate and allows a better expression of uncertainty for decision making. Collecting 100 quantiles allows the tail probabilities to be estimated. We deliberately did not request information on the correlation structure between interventions within a model, as not all models were equipped to provide results for the same initial conditions or seed values.
Submissions were received by the MIDAS Coordination Center through the MMODS website, verified for format compliance, transformed into a consistent format for analysis, and deposited in an internal project GitHub repository.
Aggregate results were produced by taking a weighted average of the individual cumulative distribution functions (SM Fig. 7); this provides critical information about the mean as well as higher order moments. Each group received equal weight in the aggregate results. For research groups submitting more than one model, the group weight was divided equally among their models (one group submitted two models). Based on the detailed checklist information, we can explicitly document the differences between models and the CDFs reflect the full degree of uncertainty considered. This model-based approach presents two advantages over human experts, who generally provide 3 to 5 quantiles at most, and generally do not document explicit differences in their thought processes that might generate different rankings (Burgman 2015). While it is impossible to do a full analysis of every difference between all the models, we explored multiple potential correlates of model result rankings and magnitudes. Ancillary information was examined to assess whether model assumptions (e.g., model structure, assumptions about importations, etc.) predicted ranks or magnitudes of projections, or various other aspects of epidemic dynamics (e.g., projected number of people who are susceptible on November 15): nothing obvious emerged (see SM: Checklist data and SM Table 1). There also was no obvious uncertainty that would reverse the choice of optimal intervention (e.g., a factor whose inclusion or exclusion leads to different rankings); had such a factor arisen, this would be a top priority for research to improve decision-making outcomes. We also document where differences in magnitude between two strategies are not large; this is only the case for individual models, but not in the aggregate. In such cases, the decision maker may have flexibility of choice, and may choose to weigh other considerations (such as costs) that have not been explicitly included in the models. Magnitude was not our primary interest, but is important in determining whether the overall benefits of an intervention are sufficient to outweigh the overall costs.
Supplementary Material
Acknowledgements
The MMODS team acknowledges Bryan Grenfell and Ottar Bjørnstad. Individual modeling team acknowledgements are listed in the SM.
USGS Disclaimer: Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.
CDC Disclaimer: The findings and conclusions of this report are those of the author(s) and do not necessarily represent the official position of the Centers for Disease Control and Prevention.
NIST Disclaimer: These opinions, recommendations, findings, and conclusions do not necessarily reflect the views or policies of the National Institute of Standards and Technology or the United States Government.
Funding
We acknowledge support from NSF COVID-19 RAPID awards 2028301 and 2037885, the Huck Institutes for the Life Sciences at The Pennsylvania State University, the National Institutes of Health, and the U.S. Geological Survey. WJMP is funded by the Li Ka Shing Foundation. WGVP, John Levander, Jeff Stazer, and Jessica Salerno are funded by the MIDAS Coordination Center (U24GM132013).
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