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. 2021 Feb 10;17(2):e1008639. doi: 10.1371/journal.pcbi.1008639

Adaptive social contact rates induce complex dynamics during epidemics

Ronan F Arthur 1, James H Jones 2, Matthew H Bonds 3, Yoav Ram 4,5,6, Marcus W Feldman 7,*
Editor: Rustom Antia8
PMCID: PMC7875423  PMID: 33566839

Abstract

Epidemics may pose a significant dilemma for governments and individuals. The personal or public health consequences of inaction may be catastrophic; but the economic consequences of drastic response may likewise be catastrophic. In the face of these trade-offs, governments and individuals must therefore strike a balance between the economic and personal health costs of reducing social contacts and the public health costs of neglecting to do so. As risk of infection increases, potentially infectious contact between people is deliberately reduced either individually or by decree. This must be balanced against the social and economic costs of having fewer people in contact, and therefore active in the labor force or enrolled in school. Although the importance of adaptive social contact on epidemic outcomes has become increasingly recognized, the most important properties of coupled human-natural epidemic systems are still not well understood. We develop a theoretical model for adaptive, optimal control of the effective social contact rate using traditional epidemic modeling tools and a utility function with delayed information. This utility function trades off the population-wide contact rate with the expected cost and risk of increasing infections. Our analytical and computational analysis of this simple discrete-time deterministic strategic model reveals the existence of an endemic equilibrium, oscillatory dynamics around this equilibrium under some parametric conditions, and complex dynamic regimes that shift under small parameter perturbations. These results support the supposition that infectious disease dynamics under adaptive behavior change may have an indifference point, may produce oscillatory dynamics without other forcing, and constitute complex adaptive systems with associated dynamics. Implications for any epidemic in which adaptive behavior influences infectious disease dynamics include an expectation of fluctuations, for a considerable time, around a quasi-equilibrium that balances public health and economic priorities, that shows multiple peaks and surges in some scenarios, and that implies a high degree of uncertainty in mathematical projections.

Author summary

Epidemic response in the form of social contact reduction, such as has been utilized during the ongoing COVID-19 pandemic, presents inherent tradeoffs between the economic costs of reducing social contacts and the public health costs of neglecting to do so. Such tradeoffs introduce an interactive, iterative mechanism that adds complexity to an infectious disease system. Consequently, infectious disease modeling typically has not included dynamic behavior change that must address such a tradeoff. Here, we develop a theoretical strategic model that introduces lost or gained economic and public health utility through the adjustment of social contact rates with delayed information. This model produces an equilibrium, a point of indifference where the tradeoff is neutral, and at which a disease will be endemic for a long period of time. Under small perturbations, this model exhibits complex dynamic regimes, including oscillatory behavior, runaway exponential growth, and eradication. These dynamics suggest that for epidemic responses that rely on social contact reduction, secondary waves and surges with accompanied business and school re-closures and shutdowns may be expected, and that accurate projection under such circumstances is unlikely.

Introduction

Adapting to a changing landscape of risk during an infectious disease epidemic may pose a significant dilemma for a susceptible individual or for a governing body responsible for the health of susceptible individuals. On the one hand, changing behavior (e.g. through social distancing) can reduce the reproduction number (R0) of an epidemic and save many from death or morbidity [1, 2]. On the other hand, behavior change can reduce an individual’s ability to make a living or, for a group of people, can hamper or cause a recession in the economy through decreased production, sales, and investment and increased unemployment, inflation, and debt [3]. This dilemma introduces a behavior change trade-off for the decision-maker, a balancing act between epidemiological interests and economic interests.

There is growing interest in the role of behavior in infectious disease dynamics (see Funk et al., 2010 [4] for a general review). Behavior relevant to epidemic outcomes is known to change in response to perceived risk during epidemics (e.g. measles-mumps-rubella (MMR) vaccination choices [5], condom purchases in HIV-affected communities [6], and social distancing in influenza outbreaks [7] and during the ongoing COVID-19 pandemic [8]). Although behavior is difficult to measure, quantify, and predict [9], modelers have adopted a variety of strategies to investigate its role in epidemic outcomes. These strategies include agent-based modeling [10], network structures that model behavior as a social contagion process [11] or that replace central nodes when sick [12], and game theoretic descriptions of rational choice under changing incentives, as in the case of vaccination [7, 13, 14]. A common approach to incorporating behavior into epidemic models is to track co-evolving dynamics of behavior and infection [11, 1517].

In epidemic response policy, it is typical to think of behavior change as an exogenously-induced intervention without considering associated incentives for the individual or the collective. Due to the interactive relationship between behavior and epidemic dynamics, adaptive behavior should instead be thought of as endogenous to an infectious disease system because it is, in part, a consequence of the prevalence of the disease, which in turn responds to changes in behavior [9, 18]. An epidemic system with adaptive behavior responds to the conditions it itself creates, and is thus a complex, adaptive system [19], subject to the properties and tendencies of such systems.

The interaction between behavioral incentives and epidemic dynamics introduces a negative feedback into the epidemic system. In an important early expansion of Kermack and McKendrick’s seminal Susceptible-Infectious-Removed (SIR) model [20], Capasso and Serio built a self-iterative epidemic model by making the transmission parameter (β) a negative function of the number of infected because “in the presence of a very large number of infectives the population may tend to reduce the number of contacts per unit time.” [21] A negative feedback such as this may lead to an endemic equilibrium [22]. This happens because, at low levels of prevalence, the cost of behavior change to avoid disease relative to the risk of infection may not be justified, even though the collective, public benefit in the long-term may be greater. Conversely, as prevalence increases, the probability of infection also increases, thus increasing incentives to adopt protective behavior [13]. If responses are based on outdated information, a negative feedback between prevalence and social contact can produce sustained oscillations in time-series data [23].

Such periodicity (i.e. multi-peak dynamics) has long been documented empirically in epidemiology [24, 25]. Periodicity can be driven by seasonal contact rate changes (e.g. when children are in school) [26], seasonality in the climate or ecology [27], sexual and social behavior change [23, 28], and host immunity cycling through new births of susceptibles or a decay of immunity over time. Some papers in nonlinear dynamics have studied delay differential equations in the context of epidemic dynamics and found periodic solutions as well [29]. Although it is atypical to include delay in modeling, delay is an important feature of epidemics. Delays of information acquisition, behavioral response, scientific investigation, and those inherent in natural biological processes can affect epidemic outcomes. In the ongoing COVID-19 pandemic, for example, there have been delays in the international recognition of the outbreak [30], delays in the identification of the virus, delays in the acquisition of reliable information on suspected and confirmed cases [31], and delays in the development and deployment of competent diagnostics [32].

Although infectious disease modelers have begun to incorporate adaptive behavior into their models, few studies in the literature capture the competing economic and public health incentives that drive delayed behavioral responses in both individual and group settings during epidemics [33, 34]. Here we develop a theoretical model using both discrete and continuous time and both SIR and SIS compartmental epidemic structures. The model, which is designed to be strategic rather than tactical (sensu Holling [35]), is adjusted on the principle of endogenous behavior change through an adaptive social-contact rate that can be thought of as either individually motivated or institutionally imposed. We introduce a novel utility function that motivates the population’s effective contact rate at a particular time period. This utility function is based on information about the epidemic size that may not be current. This leads to a time delay in the contact function that increases the complexity of the population dynamics of the infection. Results from the discrete-time model show that the system approaches an equilibrium in many cases, although small parameter perturbations can lead the dynamics to enter qualitatively distinct regimes. The analogous continuous-time model retains periodicities for some sets of parameters, but numerical investigation shows that the continuous time version is much better behaved than the discrete-time model. This behavior is similar to that in models of ecological population dynamics, and a useful mathematical parallel can be drawn between these systems.

Model specifications

SIS

To represent endogenous behavior change, we start with the classical discrete-time susceptible-infected-susceptible (SIS) model [20], which, when incidence is relatively small compared to the total population [36, 37], can be written in terms of the recursions

St+1=St-bStIt+γIt (1)
It+1=It+bStIt-γIt (2)
St+It=Nt, (3)

where at time t, St represents the number of susceptible individuals, It the infected individuals, and Nt the number of individuals that make up the population, which is assumed fixed in a closed population. We can therefore write N for the constant population size. Here γ, with 0 < γ < 1, is the rate of removal from I to S due to recovery. This model in its simplest form assumes random mixing, where the parameter b represents a composite of the average contact rate and the disease-specific transmissibility given a contact event. In order to introduce human behavior, we substitute for b a time-dependent bt, which is a function of both b0, the probability that disease transmission takes place on contact, and a dynamic social contact rate ct whose optimal value, ct*, is the number of contacts per unit time that maximize utility for the individual. ct* is determined at each time t as in economic epidemiological models [34], namely

bt=b0ct*, (4)

where ct* represents the optimal contact rate, defined as the number of contacts per unit time that maximize utility for the individual. Here, ct* is a function of the number of infected in the population according to the perceived risks and benefits of social contacts, which we model as a utility function. We assume that there is a constant utility independent of contact, a utility loss associated with infection, and a utility derived from the choice of number of daily contacts with a penalty for deviating from the choice of contacts which would yield the most utility.

This utility function is assumed to take the form

U(c)=α0-α1(c-c^)2-α2{1-[1-(It-ΔN)b0]c}. (5)

Here U represents utility for an individual at time t given a particular number of contacts per unit time c, α0 is a constant that represents maximum potential utility achieved at a target contact rate c^. The second term, -α1(c-c^)2, is a concave function that represents the penalty for deviating from c^. The third term, α2{1-[1-(It-ΔN)b0]c}, is the cost of infection (i.e. morbidity), α2, multiplied by the probability of infection over the course of the time unit. The time-delay Δ represents the delay in information acquisition and the speed of response to that information. We note that (1-INb0)c can be approximated by

[1-(IN)b0]c1-c(IN)b0, (6)

when INb0 is small and cINb01. We thus assume IN(b0) is small, that is, prevalence is low, and approximate U(c) in Eq 5 using Eq 6. Eq 5 assumes a strictly negative relationship between number of infecteds and contact.

We assume an individual or government will balance the cost of infection, the probability of infection, and the cost of deviating from the target contact rate c^ to select an optimal contact rate ct*, namely the number of contacts, which takes into account the risk of infection and the penalty for deviating from the target contact rate. This captures the idea that individuals trade off how many people they want to interact with versus their risk of becoming infected, or that authorities want to reopen the economy during a pandemic and have to trade off morbidity and mortality from increasing infections with the need to allow additional social contacts to help the economy restart. This optimal contact rate can be calculated by finding the maximum of U with respect to c from Eq 5 with substitution from Eq 6, namely

U(c)=α0-α1(c-c^)2-α2c(It-ΔN)b0. (7)

Differentiating, we have

dU(c)dc=-2α1(c-c^)-α2b0It-ΔN, (8)

which vanishes at the optimal contact rate, c*, which we write as ct* to show its dependence on time. Then

ct*=c^-α22α1b0It-ΔN, (9)

which we assume to be positive. Therefore, total utility will decrease as It increases and ct* also decreases. Utility is maximized at each time step, rather than over the course of lifetime expectations. In addition, Eq 9 assumes a strictly negative relationship between number of infecteds at time t − Δ and ct*. While behavior at high degrees of prevalence has been shown to be non-linear and fatalistic [38, 39], in this model, prevalence (i.e., b0ItN) is assumed to be small, consistent with Eq 6.

We introduce the new parameter α=α22α1b0, so that

ct*=c^-αIt-ΔN. (10)

We can now rewrite the recursion from Eq 2, using Eq 4 and replacing ct with ct* as defined by Eq 10, as

It+1=It2(b0αNIt-Δ-b0c^)+It(b0Nc^-αb0It-Δ+1-γ)=f(It,It-Δ). (11)

When Δ = 0 and there is no time delay, f(⋅) is a cubic polynomial, given by

f(It)=b0αNIt3-b0(c^+α)It2+(Nb0c^+1-γ)It. (12)

SIR

For the susceptible-infected-removed (SIR) version of the model, we include the removed category and write the (discrete-time) recursion system as

St+1=St-btStIt (13)
It+1=It+btStIt-γIt (14)
Rt+1=Rt+γIt, (15)

where Rt = NItSt, bt=b0ct* with b0 the baseline contact rate and ct* specified by Eq 10. With bt = b, say, and not changing over time, Eqs 1315 form the discrete-time version of the classical Kermack-McKendrick SIR model [20]. The inclusion of the removed category entails that I˜=0 is the only equilibrium of the system Eqs 1315; unlike the SIS model, there is no equilibrium with infecteds present. In general, since ct* includes the delay Δ, the dynamic approach to I˜=0 is expected to be quite complex. Numerical analysis of this SIR model shows strong similarity between the SIS and SIR models for several hundred time steps before the SIR model converges to I˜=0. In the section “Numerical Iteration and Continuous-Time Analog” we compare the numerical iteration of the SIS (Eq 11) and SIR (Eqs 1315) and integration of the continuous-time (differential equation) versions of the SIS and SIR models.

Analytical results

Equilibria

To determine the dynamic trajectories of (11) without time delay, we first solve for the fixed point(s) of the recursion (11) (i.e., value or values of I such that f(It+1) = It = It−Δ). That is, we solve

I=b0αNI3-b0(c^+α)I2+(Nb0c^+1-γ)I. (16)

From Eq 16, it is clear that I = 0 is an equilibrium as no new infections can occur in the next time-step if none exist in the current one. This is the disease-free equilibrium denoted by I˜. Other equilibria are the solutions of

b0αNI2-b0(c^+α)I+Nb0c^-γ=0, (17)

namely

α+c^±(α-c^)2+4αγNb02α/N. (18)

We label the solution with the + sign I* and the one with the − sign I^. I* > 0 but I* ≤ N if 4αγ/Nb0 ≤ 0, which is impossible under our assumptions that α and γ are positive. Hence I* is not feasible. Further, under these same conditions, I^N, and I^>0 if

Nc^b0>γ. (19)

It is important to note that under these conditions I^ is an equilibrium of the recursion (11) for any Δ ≥ 0. Recall that for the SIR version of this model the only equilibrium is I˜=0.

Stability of the equilibria

Assessing global asymptotic stability in epidemic models is an important task of mathematical epidemiology [40, 41]. The three equilibria of the SIS recursion (11) are qualitatively different. I˜=0 corresponds to a disease-free population; I* is greater than N and is therefore not feasible; I^ is the only positive feasible equilibrium if c^b0>γ/N (this is equivalent to R0 > 1, where R0=Nc^b0+1-γ) and is, therefore, the most interesting for the asymptotic stability behavior of the epidemic. Mathematical stability analysis of recursion (11) is complicated because of the delay term Δ. However, from (11), if Nc^b0>γ, the disease-free equilibrium I˜=0 is locally unstable, and in this case I^ is indeed feasible.

Local stability of I^ in (18) is discussed in detail in S1 Appendix. First, in the absence of delay (i.e., Δ = 0), I^ is locally stable if |ddIf(I)|I=I^<1, and the condition for this to hold when I^ is legitimate is

b0I^(α-c^)2+4αγNb0<2. (20)

If inequalities (20) and Nc^b0>γ hold, then I^ is locally stable. However, even if both of these inequalities hold, the number of infecteds may not converge to I^. It is well known that iterations of discrete-time recursive relations, of which (12) is an example (i.e., with Δ = 0), may produce cycles or chaos depending on the parameters and the starting frequency I0 of infecteds.

Numerical iteration and continuous-time analog

We begin with numerical analysis of the discrete-time SIS recursion (11), which includes the delay parameter Δ. Local stability properties of the equilibrium state I^, with 0<I^<N, are shown in the Appendix under the assumption Nc^b0>γ, which also entails that the disease-free equilibrium I˜=0 is locally unstable. In the recursion (11), the number of infecteds at time t will not, in general, be integers, but can be interpreted as the expected number of infected in the population. Further, the dynamics of It under such a recursion can be very sensitive to the starting condition I0, the size of the time delay Δ, and the parameters: N,b0,γ,c^, and α. The local stability of I^, namely whether It converges to I^ from a starting number of infecteds close to I^, may tell you little about the actual trajectory of It from other starting conditions.

Table 1 reports an array of dynamic trajectories without delay (Δ = 0) for some choices of parameters. In seven cases, I0 = 1, and in two cases the numerical iteration of Eq 12 was initiated with I0 ≠ 1. The first three rows show three sets of parameters for which the equilibrium values of I^ are very similar but the trajectories of It are different: a two-point cycle, a four-point cycle, and apparently chaotic cycling above and below I^. In all of these cases, df(I)/dI|I=I^<-1. Clearly the dynamics are sensitive to the target contact rate c^ in these cases. The fourth and eighth rows show that It becomes unbounded (tends to + ∞) from I0 = 1, but a two-point cycle is approached if I0 is close enough to I^:df(I)/dI|I=I^<-1 in these cases. For the parameters in the ninth row, if I0 is close enough to I^ there is damped oscillation into I^: here -1<df(I)/dI|I=I^<0. In the case marked *, I^ is locally stable and with a large enough initial number of infecteds, there is damped oscillatory convergence to I^. In the case marked **, with I0 = 1 the number of infecteds becomes unbounded, but in this case, I^ is locally unstable (df(I)/dI|I=I^<-1), and starting from I0 close to I^ a stable two-point cycle is approached. S5 Fig is a bifurcation diagram for recursion (11) with Δ = 0 and the other parameters from the first three lines of Table 1. As c^ increases, first there is convergence to I^, then period doubling to chaos and finally passage to negative infinity.

Table 1. Some results for dynamics of infection with Δ = 0.

Parameters Equilibrium
N b0 γ c^ α I^ Dynamics
250 0.1 0.1 0.2 0.1 240.371 I0 = 1: two-point cycle 110.436, 339.564
250 0.1 0.1 0.205 0.1 240.799 I0 = 1: four-point cycle above and below I^
250 0.1 0.1 0.209 0.1 241.115 I0 = 1: apparent chaos around I^
250 0.5 0.1 0.1 0.1 227.639 I0 = 1: becomes unbounded.
I0 = 226: converges to two-point cycle.
250 0.115 0.1 0.1 0.1 203.375 I0 = 1: overshoots I^, then decreases to I^
350 0.1 0.1 0.1 0.1 290.839 I0 = 1: overshoots I^, then decreases to I^
1,000 0.1 0.1 0.1 0.1 900.000 I0 = 1: damped oscillation to I^
1,100 0.1 0.1 0.1 0.1 995.119 I0 = 1: It becomes unbounded
I0 = 990: damped oscillation to I^
10,000 0.05 0.08 0.0015 0.375 35.718 I0 = 1: monotone convergence to I^

Stability analysis of the SIS model is more complicated when Δ ≠ 0, and in S1 Appendix we outline the procedure for local analysis of the recursion (11) near I^. Local stability is sensitive to the delay time Δ as can be seen from the numerical iteration of (11) for the specific set of parameters shown in Table 2. Some analytical details related to Table 2 are in S1 Appendix.

Table 2. The effect of the delay, Δ, on dynamics of infecteds*.

Δ Outcome
0 Monotone convergence to I^
1 Damped oscillation to I^
2 I^ locally unstable; I0 < 72 bounded oscillation; I0 > 73 unbounded oscillation
3 I^ locally unstable; collapse (−∞)
4 I^ locally unstable; collapse (−∞)

* In all cases, N = 10, 000, b0 = 0.05, γ = 0.08, c^=0.0015, α = 0.375, I^=35.718. I0 = 1 unless stated.

The fifth and sixth rows of Table 1 exemplify another interesting dynamic starting from I0 = 1. It becomes larger than I^ (overshoots) and then converges monotonically down to I^; in each case 0<df(I)/dt|I=I^<1. For the parameters in the seventh row, there is oscillatory convergence to I^ from I0 = 1 (-1<df(I)/dI|I=I^<0), while in the last row there is straightforward monotone convergence to I^. The dependence of the dynamics for recursion (11) on the delay Δ and target contact rate c^ is illustrated for Δ = 0, 1, 2 in S6 Fig. The bifurcation diagram for each Δ shows the shift, summarized in Table 2, from convergence to period doubling, chaos, and negative infinity, which occurs for smaller values of c^ as Δ increases.

A continuous-time analog of the discrete-time recursion (11), in the form of a differential equation, substitutes dI/dt for It+1It in (11). We then solve the resulting delay differential equation numerically using the VODE differential equation integrator in SciPy [42, 43] (source code available at https://github.com/yoavram/SanJose). Using the parameters in Table 2, Figs 14 compare the effect of the parameters on the trajectories of the discrete-time and continuous-time SIS model specified in (11). The number of time steps used in the computations illustrated in these figures is less than 250 in each case. In Fig 1 the delay ranges from Δ = 0 to Δ = 5, while in Fig 2 the delay is Δ = 2 and Figs 3 and 4 have delay Δ = 3. In the supplementary material S1S4 Figs, the discrete-time and continuous-time recursions of the SIR model are compared for short and much longer durations.

Fig 1. Discrete-time SIS (blue) and continuous-time SIS (orange) dynamics for delays Δ = 0 to Δ = 5.

Fig 1

N = 10, 000, b0 = 0.05, γ = 0.08, c^=0.0015, α = 0.375, and I0 = 1. Here the epidemic equilibrium is I^=35.72.

Fig 4. Effect of removal rate γ on dynamics with delay Δ = 3.

Fig 4

Discrete- and continuous-time results are in blue and orange, respectively. Other parameters as in Fig 1 with I0 = 1.

Fig 2. Effect of initial number of infecteds I0 on the dynamics for delay Δ = 2.

Fig 2

Discrete- and continuous-time results are in blue and orange, respectively. Other parameters as in Fig 1. As in Fig 1, I^=35.72.

Fig 3. Effect of baseline contact rate b0 on dynamics with delay Δ = 3.

Fig 3

Other parameters as in Fig 1 with I0 = 1. Discrete- and continuous-time results are in blue and orange, respectively. Note that α changes with b0 as α = b0 α2/2α1: (A) α = 0.0375; (B) α = 0.075; (C) α = 0.225; (D) α = 0.3; (E) α = 0.375; (F) α = 0.75.

In Fig 1, with no delay (Δ = 0) and a one-unit delay (Δ = 1), the discrete and continuous dynamics are very similar, both converging to I^. However, with Δ = 2 the differential equation oscillates into I^ while the discrete-time recursion enters a regime of inexact cycling around I^, which appears to be a state of chaos. For Δ = 3 and Δ = 4, the discrete recursion “collapses”. In other words, It becomes negative and appears to go off to −∞; in Fig 1, this is cut off at I = 0. The continuous version, however, in these cases enters a stable cycle around I^. It is important to note that in Fig 1 for each panel the initial frequency was I0 = 1 infected individual. For Δ = 2, for example, with an initial value of I0 higher than about 73, instead of the inexact cycle, which is approached for smaller values of I0, the discrete recursion goes off and becomes negatively unbounded. This dependence of the dynamics on I0 is illustrated for Δ = 2 in Fig 1, where the continuous-time version of the SIS model (11) oscillates into I^. Two expanded views of the inexact cycling seen for I0 = 1 in Fig 1 are presented in S7 Fig.

Figs 3 and 4 focus on a delay of Δ = 3 and show the dependence of the discrete- and continuous-time dynamics on parameters b0 and γ, respectively. For b0 increasing from 0.005 to 0.05 the pattern of trajectories from I0 = 1 is remarkably similar to that for γ decreasing from 0.75 to 0.1. First, both converge to I˜=0, then both converge to I^, then there is stable oscillation into I^. For b0 = 0.04 and γ = 0.2, however, the continuous trajectory enters a stable cycle while the discrete trajectory cycles inexactly around I^. For higher values of I0, however, the discrete-time trajectory may become unbounded. Finally, for b0 = 0.05 and γ = 0.75, the discrete-time trajectory goes to −∞, but is shown stopped at 0, while the continuous case develops a stable cycle.

The discrete- and continuous-time trajectories for the SIR model (1315) were studied with the same parameters as used in Figs 14. Each computation is presented twice: first, for the same length of time as the SIS discrete- and continuous-time in Figs 14, and second, for up to 5,000 time units. The trajectories are shown in the Supplementary material, where S1S4 Figs show short and longer run times. For the longer run times, as expected, in both discrete-time and continuous-time versions of the SIR model, there are eventually no infecteds. Comparing the short-run and long-run figures, the former are not good predictors of the latter in the SIR setting. The short-run behavior of the discrete-time model usually involves a great deal of cycling, which is difficult to see on the longer time scales. S8 Fig compares the SIR and SIS dynamics for the model in Fig 2A with I0 = 1 (see also S7 Fig), with panels A and B illustrating the short term and panels C and D the longer term dynamics. Panels A and B appear to show convergence to I^, but in panels C an D, after about 500 time units, both discrete- and continuous-time versions show the number of infected declining to zero.

It is worth noting that if the total population size of N decreases over time, for example, if we take N(t) = Nexp(−zt), with z=50b0c^γ, then the short-term dynamics of the SIS model in (11) begins to closely resemble the SIR version. This is illustrated in S9 Fig, where b0,c^,γ are, as in S8 Fig, the same as in Fig 2A. With N decreasing to zero, both S and I will approach zero in the SIS model, which explain its apparent similarity to the SIR model.

Discussion

This simple epidemic model with adaptive social contact produces two possible equilibria, one with zero infecteds, where the disease is eradicated, and one between zero and N, the population size, where the disease is endemic. These equilibria are locally stable under different conditions. Dynamics produced by this model are complex and subject to regime shifts across thresholds in the initial conditions and parameter settings. These dynamics include damped oscillation to the equilibrium, periodic oscillation, chaotic oscillation, and regression to positive or negative infinity. Our stability analysis is carried out in the neighborhood of the equilibria. Although global asymptotic stability analysis of some epidemic models has been possible [29, 40, 41], the inclusion of the delay Δ seems to make global analysis extremely difficult in general [29].

Our model makes a number of simplifying assumptions. We assume that all individuals in the population will respond in the same fashion to government policy and that governments or individuals choose a uniform contact rate according to an optimized utility function, which is homogeneous across all individuals in the population. This contact rate will, in practice, vary across the population according to a variety of drivers including, but not limited to, disease state, cultural and religious practices, political affiliation, housing density, occupation, risk tolerance, and age. Finally, we assume that the utility function is symmetric around the optimal number of contacts so that increasing or decreasing contacts above or below the target contact rate, respectively, yield the same reduction in utility. These assumptions allowed us to create the simplest possible model that includes adaptive behavior trade-offs and time delay.

Convergence to an endemic equilibrium when economic and public health trade-offs are included in an epidemic model is consistent with both theory [22] and other models [33]. Our results show certain parameter sets can lead to limit-cycle dynamics, consistent with other behavior change models [23, 44] and negative feedback mechanisms with time delays [45, 46]. This is because the system is reacting to conditions that were true in the past, but not necessarily true in the present. The time scale and the meaning of the delay, Δ, can influence the qualitative dynamics of the epidemic and, under certain conditions, can lead to a stable cyclic epidemic even in the continuous-time version of our model. We note that these distinct dynamical trajectories as seen in our computational experiments come from a purely deterministic recursion. This means that oscillations and even erratic, near-chaotic dynamics and collapse in an epidemic may not necessarily be due to seasonality, complex agent-based interactions, changing or stochastic parameter values, demographic change, host immunity, or socio-cultural idiosyncrasies. In our discrete-time model, there is the added complexity that the non-zero equilibrium may be locally stable but not attained from a wide range of initial conditions, including the most natural one, namely a single infected individual.

This dynamical behavior in number of infecteds can result from mathematical properties of a simple deterministic system with homogeneous endogenous behavior change, similar to complex population dynamics of biological organisms [47]. The mathematical consistency with population dynamics suggests a parallel in ecology, that the indifference point for human behavior functions in a similar way to a carrying capacity in ecology, below which a population will tend to grow and above which a population will tend to shrink. For example, the Ricker Equation [48], commonly used in population dynamics to describe the growth of fish populations, exhibits similar complex dynamics and qualitative state thresholds. These ecological models are typically structured mathematically in discrete time, while continuous time models are more commonly used in modeling epidemics. There is no a priori reason to prefer the continuous time framework over that in discrete time. It is not clear which strategic approach is more realistic as transmission from an infected to a susceptible individual may happen at anytime, but epidemiologists do tend to frame their thinking in discrete time-steps of days and weeks.

Observed epidemic curves of many transient disease outbreaks typically inflect and go extinct, as opposed to this model that may oscillate perpetually or converge monotonically or cyclically to an endemic disease equilibrium. Including institutional and public efforts that are further incentivized to eradicate, rather than to optimize short-term utility trade-offs, would alter the dynamics to look more like real-world epidemic curves. Beyond infectious diseases that remain endemic to society, outbreaks may also flare up once or multiple times, such as the double-peaked outbreaks of SARS in three countries in 2003 [49], and surges in fluctuations in COVID-19 cases globally in 2020 [50]. There may be many causes for such double-peaked outbreaks, one of which may be a lapse in behavior change after the epidemic begins to die down due to decreasing incentives [11], as represented in our simple theoretical model. This is consistent with findings that voluntary vaccination programs suffer from decreasing incentives to participate as prevalence decreases [51, 52]. A recent analysis [53] that incorporated epidemic-like transmission of sentiment opposed to vaccination against an infection found that the transient dynamics of the anti-vaccine sentiment could induce complex dynamics of the disease epidemic. However, this analysis did not incorporate a time delay in the manifestation of the anti-vaccine sentiment. The relation between the spread of the sentiment and of the infection is, therefore, somewhat different from that seen here between an adaptive contact rate and the epidemic dynamics.

One of the responsibilities of infectious disease modelers is to predict and project forward what epidemics will do in the future in order to better assist in the proper and strategic allocation of preventative resources. However, there are limits to the power and precision of such modeling. In our model, allowing for adaptive behavior change leads to a system that is qualitatively sensitive to small differences in values of key parameters. These parameters are very hard to measure precisely; they change depending on the disease system and context and their inference is generally subject to large errors. Further, we don’t know how policy-makers weight the economic trade-offs against the public health priorities (i.e., the ratio between α1 and α2 in our model) to arrive at new policy recommendations. Geographic and/or cultural variation in our parameter ct* (and concomitant variation in the delay Δ) are likely to affect how epidemic dynamics are affected by such trade-offs.

In our model, complex dynamic regimes occur more often when there is a time delay. If behavior change arises from fear and fear is triggered by high local mortality and high local prevalence, such delays are biologically inherent because death and incubation periods are lagging epidemiological indicators. Lags, whether social, environmental, or biological, mean that people can respond inappropriately to an unfolding epidemic crisis, but they also mean that people can abandon protective behaviors prematurely as conditions improve. Developing approaches to reduce lags or to incentivize protective behavior throughout the duration of any lag introduced by the natural history of the infection (or otherwise) should be a priority in applied research. Policy-makers should also consider the benefit of the long-term utility of early-stage overreaction to outbreaks and consider overriding short-term incentives. In light of the COVID-19 crisis, understanding endogenous delayed behavior change and economic incentives is of crucial importance to outbreak response and epidemic management. We anticipate further developments along these lines that could incorporate long incubation periods and other delays, recognition of asymptomatic transmission, influential heterogeneous drivers, and meta-population dynamics of simultaneous, connected epidemics.

Supporting information

S1 Appendix. Local stability of the endemic equilibrium I^.

Conditions are given for various values of the delay time Δ and the parameters in Table 2.

(PDF)

S1 Fig. Discrete-time (blue) and continuous-time (orange) versions of the SIR model Eqs (13)(15) with different values of Δ.

Parameters are the same as in Fig 1. Panels A–F represent shorter times and G–L longer times. For Δ = 3, 4, 5, the discrete-time trajectories are stopped at I = 0, as they go off to −∞. The continuous-time cases all converge to zero infecteds.

(TIF)

S2 Fig. SIR version of the SIS model in Fig 2 with Δ = 2 and different values for I0.

Discrete-time (blue) and continuous-time (orange) trajectories are similar to the SIS graphs. Parameters as in Fig 2. Panels A–D represent shorter time and E–H longer times.

(TIF)

S3 Fig. SIR version of the SIS model in Fig 3 with different values of b0.

Discrete-time (blue) and continuous-time (orange) trajectories are similar to the SIS graphs in Fig 3. Parameters as in Fig 3. Panels A–F represent shorter times and G–L longer times.

(TIF)

S4 Fig. Effect of removal rate γ on discrete-time (blue) and continuous-time (orange) versions of the SIR model.

Note the compression of the cycles seen in Fig 4 and the earlier decline to zero infecteds. Panels A–E represent shorter times and F–J longer times. Parameters as in Fig 4.

(TIF)

S5 Fig. Bifurcation diagram with varying c^ as in Table 1 on the x-axis and its corresponding reproduction number R0.

The dotted horizontal line delineates the total population size (N = 250). Dynamics exhibit convergence to the endemic equilibrium (including monotonic, overshooting, and damped oscillation) and period doubling to chaos, followed by passage to negative infinity.

(TIF)

S6 Fig. Bifurcation diagrams of time delay Δ = 0, 1, 2 as in Table 2 with varying target contact rate c^.

Dynamics progress from convergence to chaos to negative infinity. As Δ increases, transitions between dynamic regimes begin at smaller values of c^.

(TIF)

S7 Fig. Dynamics with delay Δ = 2 and initial number of infecteds I0 = 1 in the SIS model (same as Fig 2A).

(A): Return map showing more than one It+1 value for each value of It. (B): Comparing the “elliptical” dynamics in part (A) with continuous-time damped oscillation (orange) to equilibrium I^=35.72. Other parameters as in Fig 2. This figure is the same as Fig 2A.

(TIF)

S8 Fig. SIR versions of discrete-time (blue) and continuous-time (orange) versions of the SIS model in Fig 2A.

Note the apparent approach to I^ in panels A and B. Both discrete-time and continuous-time trajectories eventually approach R = N for longer times as in panel C.

(TIF)

S9 Fig. SIS model (recursion (11)) with N decreasing over time.

This uses the same parameters as in Fig 2 but sets N = N(t) = exp(−zt), where z=50γb0c^ with γ = 0.08, b0 = 0.05, c^=0.0015. Note the similarity to S8 Fig, panels A and B.

(TIF)

Acknowledgments

The authors thank Kaleda Krebs Denton and W. Brian Arthur for helpful comments on an earlier draft of the manuscript.

Data Availability

All relevant data are within the manuscript and its Supporting information files.

Funding Statement

This research was supported in part by the Morrison Institute for Population and Research Studies (morrisoninstitute.stanford.edu) (MWF), by Israel Science Foundation grants 552/19 and 3811/19 (isf.org.il) (YR), and by a Graduate Research Fellowship from the National Science Foundation #2015160091 (nsf.gov) (RFA). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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PLoS Comput Biol. doi: 10.1371/journal.pcbi.1008639.r001

Decision Letter 0

Stefano Allesina, Rustom Antia

3 Oct 2020

Dear Dr. Feldman,

Thank you very much for submitting your manuscript "Adaptive social contact rates induce complex dynamics during epidemics" for consideration at PLOS Computational Biology.

As with all papers reviewed by the journal, your manuscript was reviewed by members of the editorial board and by several independent reviewers. In light of the reviews (below this email), we would like to invite the resubmission of a significantly-revised version that takes into account the reviewers' comments.

I enjoyed reading the manuscript and particularly the relevance of the idea that behavioral changes elicited by potentially outdated information can result in complex dynamics for the epidemic. Reviewer 1 has made a number of very reasonable comments which can and should be addressed. Please discuss the relevance of SIS vs SIR dynamics more clearly. For coronaviruses it seems that the dynamics lies somewhere between SIS and SIR --- infection induces immunity that: (i) very significantly reduces pathology; (ii) transiently prevents infection and (iii) reduces the extent of transmission following subsequent infections. While including these details is not likely to change the main conclusions of the paper it may be worth mentioning in the discussion section.

We cannot make any decision about publication until we have seen the revised manuscript and your response to the reviewers' comments. Your revised manuscript is also likely to be sent to reviewers for further evaluation.

When you are ready to resubmit, please upload the following:

[1] A letter containing a detailed list of your responses to the review comments and a description of the changes you have made in the manuscript. Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out.

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Sincerely,

Rustom Antia

Associate Editor

PLOS Computational Biology

Stefano Allesina

Deputy Editor

PLOS Computational Biology

***********************

I enjoyed reading the manuscript and particularly the relevance of the idea that behavioral changes elicited by potentially outdated information can result in complex dynamics for the epidemic. Reviewer 1 has made a number of very reasonable comments which can and should be addressed. Please discuss the relevance of SIS vs SIR dynamics more clearly. For coronaviruses it seems that the dynamics lies somewhere between SIS and SIR --- infection induces immunity that: (i) very significantly reduces pathology; (ii) transiently prevents infection and (iii) reduces the extent of transmission following subsequent infections. While including these details is not likely to change the main conclusions of the paper it may be worth mentioning in the discussion section.

Reviewer's Responses to Questions

Comments to the Authors:

Please note here if the review is uploaded as an attachment.

Reviewer #1: Epidemics have huge public health and economic effects, and governments have the challenge to balance the costs and benefits in considering different interventions. While lockdown restrictions may curtail spread, the economic costs of such policies may be great. In this paper, the authors highlight the importance of understanding how human behaviour responds to an epidemic and thereby changes patterns of transmission. These dynamics need to be considered in establishing government responses to epidemics. The authors develop and analyse an epidemiological model (both continuous and discrete time, and SIS and SIR) where social contact rate is modelled as a utility function with delayed information. Individuals receive outdated information and thus they are responding to 'old' information. This lag in the system causes complex dynamics. They find that the dynamics are highly sensitive to details such as initial conditions and the nature of the behavioural response to infection dynamics, and therefore the time-delays. Thus, it is inherently difficult to make accurate predictions from models without further studying and measuring these effects.

These are significant messages and the analysis demonstrates the principles clearly. However, the manuscript struggles with the tension between realism and tractability. Understanding the current pandemic is an important goal but perhaps slightly at odds with the central theme here.

Specific comments and queries follow.

1. From the abstract the authors frame the problem in terms of COVID-19. However, this link to COVID-19 does not seem essential to the main messages in that parameters are not calibrated to any particular data (observational or quantitative). Introducing this link early in the article suggests a direct and focused application of the model to COVID-19. But this doesn't appear to be the aim of the study.

One way to address this issue is to re-frame the early part of the manuscript around the more general problems of time-delays, behavioural change and potential unpredictable epidemic dynamics. And slightly reduce emphasise on COVID-19.

On a related note, the authors' text in lines 326-330 regarding Holling's heuristic distinction in ecology effectively signal the authors' intentions. This would be useful to state earlier in the text as well (or instead). This may help stave off criticisms of parameter choice etc. that are not data-driven.

And again along the same lines, the authors suggest that this work may have “a useful implication for policy” (line 360). It is not completely clear what this is. If prediction is “perhaps impossible” (line 376), then what might be next and what does this mean for public health? Some discussion on whether or not this is useful would benefit the paper.

2. Figures 1-4 are all based on the SIS model. SIS is unlikely to be a good description of COVID-19 if there is immunity (and hopefully there is and an effective safe vaccine will be found). It's clear this study is not just about COVID, but is there a reason to focus the analysis on SIS dynamics, which might be very different to COVID dynamics? Is this because SIS is more tractable?

In the standard SIR model the epidemic ends as the infectious cases encounter too many recovered and not enough susceptible people, assuming a constant contact rate. It would be interesting to explore in your model whether the oscillations alter these dynamics and sustain the epidemic where it otherwise would have ended.

3. Is there a basic reproduction number or equivalent in this system – an R_0 or R_t? Is there a threshold effect? In Fig 3 for example, it appears as if crossing a threshold causes a shift in behaviour. This could perhaps be addressed with additional text.

4. How herd immunity is handled also reflects a mismatch between the analysis and the goal to understand COVID. In line 175 you say “... we do expect that from any initial frequency I_0 of infected all N individuals will eventually be in the R category” and in line 294 “For the longer run times, as expected, both discrete-time and continuous-time versions of the SIR model eventually converge to R=N with no infected”. It is not clear why this should be so. In standard SIR models R does not converge to N unless R_0 goes to infinity. I(t) does go to zero, but not all susceptibles are infected (S(t) does not go to 0), so R(t) should not go to N. Explain/clarify or re-examine. It would be helpful to plot the removed class R(t). Presumably it approaches herd immunity levels. It would be horrific if we really expected everyone to be ultimately infected with SARS-CoV2!

5. The differences in trajectories between discrete and continuous time suggest that the formulation of the model makes a big difference. Does this mean that the complexity of dynamics is partly an artefact of how the model is formulated? Which is more realistic or better: discrete or continuous? How much is mathematical curiosity (i.e. chaos in logistic map model) and how much is actually of interest in a real epidemic context?

6. The model is clearly sensitive to initial conditions and parameters. How do you know that the long-term behaviour is accurately determined by the numerical analysis? Is it possible that small numerical errors accumulate and grow, rather than diminish over time?

7. Since the model is sensitive to these differences in initial conditions and parameters, could the authors synthesise the interpretation of these results in terms of the effect of different parameter choices? What do the parameter choices mean in terms of COVID-19, or other epidemics? E.g. do you only get monotone convergence when the target contact rate is very low? While the conditions are given, some interpretation of 'ballpark realism' may be useful.

Minor technical comments:

1. In line 193 and continued throughout – “illegitimate” is a funny word choice here relating to I*. Perhaps “physically unreal/impossible” or “not feasible” could be used instead?

2. Fig 4 curves are thick and blobby. Could these be made slightly thinner?

3. Line 136: "The second term, \\alpha_1 (c − \\hat{c})^2 , is a concave function" - do you mean convex? With the negative sign it is concave.

4. There are lot of interesting results with different behaviour as listed in Table 1. However, the presentation is quite hard to follow. Since these are numerical examples (the placing of these under “analytical results” doesn't seem quite right either), could these be related to the Figures in a concise/useful way to help the reader understand the information?

5. Supplementary Figures in general: it would be good (if the journal requirements permit) to combine all the figures into a single document which includes figure legends. The alternative is quite awkward to look through.

6. FigS1 looks the same as Fig1. Is it supposed to be?

7. In the long-time Supplementary Figures it is sometimes hard to tell what's going on. E.g. sometimes hard to tell where the blue trajectories go. Is there any other way of making comparison? You could try log scale for time, though admittedly that would be a bit unconventional.

8. Could the authors add a brief comment/prediction about what they expect to happen if there was asynchrony in the delay term? Presumably not everyone follows the same behaviour and may be slower to adopt restrictions.

Reviewer #2: equation 18: full stop missing

intro paragraph at line 80 - drop in some citations for the covid 19 delays.

lin 121: definition of c*_t as the optimal value apear twice in that long sentence

equation 6: your aproximation is equivalent to low prevalence. suggest stating that here, rather than later on.

line 145: in that paragraph you focus on optimal number of contacts. For individuals at high risk of severe disease, the chance of negative outcomes given N contacts is likely higher than for a low risk individual. Perhaps expand on this limitation a bit more at line 322? Because the assuming a high risk individual has far fewer contacts than a low risk individual would likely affect estimates of the burden on healthcare systems. eg UK covid policy involved high risk individuals 'shielding', so having different rules to the rest of the population. So whilst a better understanding of behavioural dynamics could improve model predictions, it is important to ensure they allow for hetrogeneity.

line 156: you introduce c* having previously introduced c*_t. You then redefine c* as c*_t and then go on to mention both. I assume you require only one of these, c*_t?

line 198: you mention the importance of global stability analysis then immediatly follow with local instability and stability only, therefore the statement seems out of place. Please remove or clarify.

justify why looking at an SIS model, and then and SIR model. I think a motivating sentence to lnk together the introduction to SIS, then SIS to SIR would be helpful.

Can you justify your choice of modelled delays? In the introduction you mention a delay of 14 days (line 87) for public health to understand the effects of interventions, however the results section has a maximum delay of 5 days.

I think the first paragraph or two of the discussion would benefit from more real-world disucssion of what the results mean. Currently this comes later in the discussion, after limitations.

In the manuscript you assume disease prevalence is low and make a first order approximation. Perhaps you have an opportunity to link to covid in the discussion as many countries have interventions in place so covid is a disease that is remaining at low prevalence.

line 373: "COVID-19 models have often proved wrong by orders of magnitude because they lack the means to account for adaptive response."

Unsupposted statement.

I am also unsure that it should remain - I am unsure if the models that are feeding in to policymakers are all published yet, so do citations exist to back this statement as it stands?

You may want to rewrite this paragraph a bit. I think you have scope to say that existing models are perhaps not fully informed about behaviour so have to make simplifying assumptions, or that certain relevant intervention compliance questions are not able to be answered by existing models.

Similarly, in the abstract, "Models have proved inaccurate because behavioral

response patterns are either not factored in or are hard to predict." This again very much depends on what questino the models are trying to answer. If they are well-informed from, say, hospital data then they might be very good at predicting bed demand, even without a mechanistic model for understanding behaviours in the community.

**********

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Large-scale datasets should be made available via a public repository as described in the PLOS Computational Biology data availability policy, and numerical data that underlies graphs or summary statistics should be provided in spreadsheet form as supporting information.

Reviewer #1: Yes

Reviewer #2: None

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Reviewer #2: Yes: Caroline E Walters

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PLoS Comput Biol. doi: 10.1371/journal.pcbi.1008639.r003

Decision Letter 1

Stefano Allesina, Rustom Antia

16 Dec 2020

Dear Dr. Feldman,

We are pleased to inform you that your manuscript 'Adaptive social contact rates induce complex dynamics during epidemics' has been provisionally accepted for publication in PLOS Computational Biology.

Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests.

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PLOS Computational Biology

Stefano Allesina

Deputy Editor

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***********************************************************

Reviewer's Responses to Questions

Comments to the Authors:

Please note here if the review is uploaded as an attachment.

Reviewer #1: The authors have considered and addressed the suggestions and queries raised in the first review. For example there is a better balance between the mathematical/computational analysis and the epidemiological implications, and the discussion of the SIR model is updated and an R0-based threshold introduced. By reframing the manuscript as a theoretical investigation rather than a more direct application to COVID-19, the wider benefits of the article are made clearer.

The minor issues have been addressed.

One remaining problem: a repeated phrase in lines 109-112. The interpretation of c_t^* is given twice.

Reviewer #2: Thanks to the authors for all their work on the manuscript. Removing the focus of covid-19, framing as a more theoretical piece, has really improved the manuscript in my opinion. Lot easier to read, both introduction and discussion provide clear justification for the work and how it contribution the wider literature. If you decide to do another paper with behavioural heterogeneity then I look forward to reading it.

minor:

line 194 "legitimate" still used.

line 182: “Assessing global asymptotic stability in epidemic models is an important task of mathematical epidemiology”

I really think you don’t need this sentence right here, because you do not do global stability analysis. I understand why, that’s fine, I’d just not have this sentence in the results section. Just move it to the discussion. Lead with ‘this is what we did’ or just lead with “The three equilibria of the SIS recursion…”

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Have all data underlying the figures and results presented in the manuscript been provided?

Large-scale datasets should be made available via a public repository as described in the PLOS Computational Biology data availability policy, and numerical data that underlies graphs or summary statistics should be provided in spreadsheet form as supporting information.

Reviewer #1: Yes

Reviewer #2: Yes

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Reviewer #1: No

Reviewer #2: Yes: Caroline E Walters

PLoS Comput Biol. doi: 10.1371/journal.pcbi.1008639.r004

Acceptance letter

Stefano Allesina, Rustom Antia

25 Jan 2021

PCOMPBIOL-D-20-01217R1

Adaptive social contact rates induce complex dynamics during epidemics

Dear Dr Feldman,

I am pleased to inform you that your manuscript has been formally accepted for publication in PLOS Computational Biology. Your manuscript is now with our production department and you will be notified of the publication date in due course.

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Appendix. Local stability of the endemic equilibrium I^.

    Conditions are given for various values of the delay time Δ and the parameters in Table 2.

    (PDF)

    S1 Fig. Discrete-time (blue) and continuous-time (orange) versions of the SIR model Eqs (13)(15) with different values of Δ.

    Parameters are the same as in Fig 1. Panels A–F represent shorter times and G–L longer times. For Δ = 3, 4, 5, the discrete-time trajectories are stopped at I = 0, as they go off to −∞. The continuous-time cases all converge to zero infecteds.

    (TIF)

    S2 Fig. SIR version of the SIS model in Fig 2 with Δ = 2 and different values for I0.

    Discrete-time (blue) and continuous-time (orange) trajectories are similar to the SIS graphs. Parameters as in Fig 2. Panels A–D represent shorter time and E–H longer times.

    (TIF)

    S3 Fig. SIR version of the SIS model in Fig 3 with different values of b0.

    Discrete-time (blue) and continuous-time (orange) trajectories are similar to the SIS graphs in Fig 3. Parameters as in Fig 3. Panels A–F represent shorter times and G–L longer times.

    (TIF)

    S4 Fig. Effect of removal rate γ on discrete-time (blue) and continuous-time (orange) versions of the SIR model.

    Note the compression of the cycles seen in Fig 4 and the earlier decline to zero infecteds. Panels A–E represent shorter times and F–J longer times. Parameters as in Fig 4.

    (TIF)

    S5 Fig. Bifurcation diagram with varying c^ as in Table 1 on the x-axis and its corresponding reproduction number R0.

    The dotted horizontal line delineates the total population size (N = 250). Dynamics exhibit convergence to the endemic equilibrium (including monotonic, overshooting, and damped oscillation) and period doubling to chaos, followed by passage to negative infinity.

    (TIF)

    S6 Fig. Bifurcation diagrams of time delay Δ = 0, 1, 2 as in Table 2 with varying target contact rate c^.

    Dynamics progress from convergence to chaos to negative infinity. As Δ increases, transitions between dynamic regimes begin at smaller values of c^.

    (TIF)

    S7 Fig. Dynamics with delay Δ = 2 and initial number of infecteds I0 = 1 in the SIS model (same as Fig 2A).

    (A): Return map showing more than one It+1 value for each value of It. (B): Comparing the “elliptical” dynamics in part (A) with continuous-time damped oscillation (orange) to equilibrium I^=35.72. Other parameters as in Fig 2. This figure is the same as Fig 2A.

    (TIF)

    S8 Fig. SIR versions of discrete-time (blue) and continuous-time (orange) versions of the SIS model in Fig 2A.

    Note the apparent approach to I^ in panels A and B. Both discrete-time and continuous-time trajectories eventually approach R = N for longer times as in panel C.

    (TIF)

    S9 Fig. SIS model (recursion (11)) with N decreasing over time.

    This uses the same parameters as in Fig 2 but sets N = N(t) = exp(−zt), where z=50γb0c^ with γ = 0.08, b0 = 0.05, c^=0.0015. Note the similarity to S8 Fig, panels A and B.

    (TIF)

    Attachment

    Submitted filename: Response to reviewers via Dr.docx

    Data Availability Statement

    All relevant data are within the manuscript and its Supporting information files.


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