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. 2021 Sep 23;26(38):2100833. doi: 10.2807/1560-7917.ES.2021.26.38.2100833

mRNA vaccine effectiveness against COVID-19-related hospitalisations and deaths in older adults: a cohort study based on data linkage of national health registries in Portugal, February to August 2021

Baltazar Nunes 1,2, Ana Paula Rodrigues 1, Irina Kislaya 1,2, Camila Cruz 3, André Peralta-Santos 4, João Lima 3, Pedro Pinto Leite 4, Duarte Sequeira 3, Carlos Matias Dias 1,2, Ausenda Machado 1,2
PMCID: PMC8462036  PMID: 34558406

Abstract

Through deterministic data linkage of health registries, mRNA vaccine effectiveness (VE) against COVID-19-related hospitalisations and deaths was measured in 1,880,351 older adults. VE against hospitalisations was 94% (95% confidence interval (CI): 88–97) and 82% (95% CI: 72–89) for those 65–79 and ≥ 80 years old, with no evidence of waning 98 days after dose two. VE against mortality was 96% (95% CI: 92–98) and 81% (95% CI: 74–87) in these two age groups.

Keywords: SARS-CoV-2, hospitalisation, Vaccine Effectiveness, COVID-19 related death, older adults


Vaccination has proven essential to reduce the coronavirus disease (COVID-19) burden and its complications. Understanding vaccine effectiveness (VE) against outcomes of various severity levels in diverse epidemiological contexts is important to inform public health recommendations. This study aimed at estimating the effectiveness of mRNA COVID-19 vaccines Comirnaty (BNT162b2 mRNA, BioNTech-Pfizer, Mainz, Germany/New York, United States (US)) and Spikevax (mRNA-1273, Moderna, Cambridge, US) against COVID-19-related hospitalisations and deaths in a cohort of 1,880,351 Portuguese adults aged 65 years and older between February and August 2021.

Study setting

We developed a cohort study based on linkage of electronic health registries. The target population included community-dwelling individuals aged 65 years and older residing in mainland Portugal.

We excluded individuals who were aged 110 years and older, were institutionalised, or had a previous severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. The institutionalised individuals, which included long-term care facility residents, were excluded because their targeted period of vaccination preceded the start of our study timeframe. Additionally, to improve completeness and quality of the health records in the age group 65–79 years, we only included the subset of ‘frequent users’, individuals who had at least one contact with the primary health care unit in the previous 3 years of the National Health Service [1]. For the cohort aged 80 years and above, data were restricted to those who received at least one influenza or pneumococcal vaccine in the last 5 years, given that this increases the likelihood of being current health care users and their eligibility to be vaccinated at that stage.

The study period was defined based on the Portuguese vaccination campaign calendar, starting on 2 February 2021 for the cohort aged 80 years and above and on 30 March 2021 for the cohort aged 65–79 years, up to the date of the last observed event for each outcome (Supplementary Table S1).

Data sources

Eight national electronic health registries, all managed by the Portuguese Ministry of Health, were used in this study, including the National Health Service User (NHSU) database, the vaccination registry, the National Information System for Epidemiological Surveillance, the National Death Registry, the Primary Care Information System, the Primary Care Clinical Monitoring System of COVID-19 patients in home isolation, the National Database of Medicine and Treatment Prescriptions and the National Database of Hospital Discharges. All databases were combined into one analytical system.

Definitions of outcome, exposure and confounding factors

A COVID-19-related hospitalisation was defined as admission for at least 24 h with COVID-19 as the primary diagnosis (ICD10 code U07.1), retrieved from the National Database of Hospital Discharges [2], and a previous positive reverse transcription PCR (RT-PCR) test. A COVID-related death was considered an all-cause death accompanied by a positive RT-PCR test that occurred within 30 days prior [3].

mRNA vaccine administration was categorised into three levels: unvaccinated (no registered dose), partially vaccinated (14 days after the first dose or less than 14 days after the second dose) and complete vaccination (14 days after the second dose). Additionally, waning VE was evaluated for the cohort aged 80 years and older over time from 14 days after the second dose, stratified in 28-day intervals, up to 98 or more days after dose two.

Age groups, sex, health region, municipality level European Deprivation Index (EDI) quintile [4], number of chronic conditions (including anaemia, asthma, cancer, cardiovascular disease, stroke, dementia, diabetes, hypertension, chronic liver disease, neuromuscular disease, renal disease, rheumatic disease, pulmonary disease, obesity, immunodeficiency and tuberculosis), number of laboratory SARS-CoV-2 tests during 2021, and previous influenza or pneumococcal vaccine uptake in the past 3 years were considered as potential confounders (Tables 1 and 2).

Table 1. Demographic characteristics and vaccine status of cohort individuals aged 65–79 years, Portugal, March–August 2021 (n = 878,489).

Characteristics mRNA vaccination a
n = 753,151
Unvaccinated
n = 125,338
n % n %
Age group (years)
65–69 294,438 39.1 47,515 37.9
70–74 255,355 33.9 42,898 34.2
75–79 203,358 27.0 34,925 27.9
Sex
Women 423,772 56.3 69,589 55.5
Men 329,379 43.7 55,749 44.5
Region
Norte 320,327 42.5 28,675 22.9
Centro 132,741 17.6 20,831 16.6
Lisbon and Tagus Valley 231,906 30.8 45,853 36.6
Alentejo 34,876 4.6 5,150 4.1
Algarve 29,081 3.9 13,321 10.6
Missing 4,220 0.6 11,508 9.2
EDI quintile
Q1 (least deprived) 117,775 15.6 15,159 12.1
Q2 111,710 14.8 15,187 12.1
Q3 110,228 14.6 14,778 11.8
Q4 219,931 29.2 30,949 24.7
Q5 (most deprived) 189,287 25.1 37,757 30.1
Missing 4,220 0.6 11,508 9.2
Number of chronic diseasesb
0 172,920 23.0 59,424 47.4
1 199,357 26.5 27,649 22.1
2 185,810 24.7 19,616 15.7
3 118,451 15.7 11,153 8.9
4 52,233 6.9 5,008 4.0
≥ 5 24,380 3.2 2,488 2.0
Number of SARS-CoV-2 tests in 2020
0 609,591 80.9 99,863 79.7
1 87,337 11.6 14,115 11.3
2 29,848 4.0 4,908 3.9
3 10,385 1.4 1,871 1.5
4–9 13,823 1.8 3,649 2.9
≥ 10 2,167 0.3 932 0.7
Vaccine uptake in the last 4 yearsc
Influenza or pneumococcal vaccine 495,996 65.9 25,437 20.3

SARS-CoV-2: severe acute respiratory syndrome coronavirus 2; EDI: European Deprivation Index; Q: quintile.

a mRNA vaccination refers to two doses of either mRNA vaccine Comirnaty or Spikevax.

b List of chronic diseases: anaemia, asthma, cancer, cardiovascular disease, stroke, dementia, diabetes, hypertension, chronic liver disease, neuromuscular disease, renal disease, rheumatic disease, pulmonary disease, obesity, immunodeficiency, and tuberculosis.

c Individuals who received at least one of the following vaccines since 2018: influenza, pneumococcal polysaccharide vaccine 23, pneumococcal conjugated vaccine 13.

Table 2. Demographic characteristics and vaccine status of cohort individuals aged 80 years and older, Portugal, February–August 2021 (n = 460,820).

Characteristics mRNA vaccination a
n = 433,878
Unvaccinated
n = 26,942
n % n %
Age group
80–84 222,087 51.2 10,342 38.4
85–89 144,989 33.4 9,197 34.1
90–94 54,046 12.5 5,301 19.7
≥ 95 12,756 2.9 2,102 7.8
Sex
Women 257,492 59.3 17,314 64.3
Men 176,386 40.7 9,628 35.7
Region
Norte 159,051 36.7 8,874 32.9
Centro 91,672 21.1 5,145 19.1
Lisbon and Tagus Valley 141,890 32.7 9,284 34.5
Alentejo 24,013 5.5 1,243 4.6
Algarve 15,778 3.6 1,594 5.9
Missing 1,474 0.3 802 3.0
EDI quintile
Q1 (least deprived) 75,836 17.5 4,273 15.9
Q2 67,922 15.7 3,759 14.0
Q3 65,827 15.2 3,981 14.8
Q4 120,327 27.7 7,200 26.7
Q5 (most deprived) 102,492 23.6 6,927 25.7
Missing 1,474 0.3 802 3.0
Number of chronic diseasesb
0 45,350 10.5 9,325 34.6
1 84,118 19.4 4,279 15.9
2 112,888 26.0 4,940 18.3
3 96,043 22.1 4,249 15.8
4 56,889 13.1 2,393 8.9
≥ 5 38,590 8.9 1,756 6.5
Number of SARS-CoV-2 tests in 2021
0 338,916 78.1 17,503 65.0
1 48,115 11.1 3,665 13.6
2 19,427 4.5 1,976 7.3
3 9,373 2.2 1,135 4.2
4–9 16,176 3.7 2,355 8.7
≥ 10 1,871 0.4 308 1.1
Vaccination uptake in the last 4 yearsc
Influenza or pneumococcal vaccine 418,873 96.5 22,518 83.6

SARS-CoV-2: severe acute respiratory syndrome coronavirus 2; EDI: European Deprivation Index; Q: quintile.

a mRNA vaccination refers to two doses of either Comirnaty or Spikevax vaccine.

b List of chronic diseases: anaemia, asthma, cancer, cardiovascular disease, stroke, dementia, diabetes, hypertension, chronic liver disease, neuromuscular disease, renal disease, rheumatic disease, pulmonary disease, obesity, immunodeficiency, and tuberculosis.

c Individuals who received at least one of the following vaccines since 2018: influenza, pneumococcal polysaccharide vaccine 23, pneumococcal conjugated vaccine 13.

Statistical analysis

We compared individual characteristics at baseline by vaccination status and estimated the COVID-19-related hospitalisation and death rates per 1,000 person-years for unvaccinated and post-mRNA vaccine periods according to the number of doses. Individuals vaccinated with other vaccine types (Vaxzevria; AstraZeneca/Oxford, Cambridge, UK or (COVID-19 Vaccine Janssen; Janssen-Cilag International, Beerse, Belgium) contributed to unvaccinated person-time before vaccination. We estimated VE separately for two age group cohorts: 65–79 years and 80 years and above. VE was computed as one minus the confounder-adjusted hazard ratio for each outcome, estimated by time-dependent Cox regression [5] with time-dependent vaccine exposure, adjusted for confounding using 7-day periods as strata. For the cohort aged 80 years and above, the VE waning effect was estimated by the hazard ratio between two doses at 98 days or more versus two doses at 14 to 41 days. Statistical analysis was performed in R version 4.0.5 (R Foundation, Vienna, Austria).

Participants characteristics

We enrolled 1,409,831 people aged 65–79 years and 470,520 aged 80 years and older in the study (Supplementary Figure S1 and S2). Of those aged 65–79 years, 45.5% (n = 641,119) received Comirnaty, 8.0% (n = 112,032) received Spikevax and 37.7% (n = 531,342) received other vaccines (Vaxzevria and COVID-19 Vaccine Janssen), while 8.9% (n = 125,338) remained unvaccinated. In the cohort aged 80 years and older, 5.7% (n = 26,942) were unvaccinated whereas 80.4% (n = 378,312), 11.8% (n = 55,566) and 2.1% (n = 9,700) received at least one dose of Comirnaty, Spikevax or other aforementioned vaccines, respectively. Roll-out of vaccine coverage is presented in the Supplement (Supplementary Figure S3).

During the observation period, a total of 195 COVID-19-related hospital admissions and 115 deaths were registered for the cohort aged 65–79 years, whereas among those aged 80 years and above, 816 cases were hospitalised with a primary COVID-19 diagnosis and 679 died (Supplementary Figure S4 and S5).

Vaccine effectiveness against hospitalisations with a primary COVID-19 diagnosis

For the cohort aged 65–79 years, adjusted mRNA VE against COVID-19-related hospitalisations was 78% (95% CI: 61–87) for partial vaccination and 94% (95% CI: 88–97) for a complete vaccination scheme (Table 3). For cohort aged 80 years, we observed lower VE estimates for hospitalisation, with 55% (95% CI: 35–69) for partial and 82% (95% CI: 72–89) for complete vaccination, respectively (Table 4).

Table 3. COVID-19-related hospitalisations and deaths, incidence, hazard ratios and vaccine effectiveness by mRNA vaccination status for individuals aged 65–79 years, Portugal, March–August 2021 (n = 878,489).

Outcome by vaccination status Person-years Events
(n)
Rate Rate ratio 95% CI Confounder-adjusted HR 95% CI VE 95% CI
Hospitalisation
Unvaccinated 145,020 169 1.17 1 NA 1 NA NA
Partial vaccination 59,064 15 0.25 0.21 0.13–0.36 0.22 0.13–0.39 78 61–87
Complete vaccination 133,715 11 0.08 0.07 0.04–0.13 0.06 0.03–0.12 94 88–97
Total 337,799 195 NA
Hazard ratioa NA 0.29 0.13–0.66 NA
Death
Unvaccinated 145,057 90 0.62 1 NA 1 NA NA
Partial vaccination 59,071 11 0.19 0.31 0.16–0.37 0.23 0.12–0.44 77 56–88
Complete vaccination 133,716 14 0.10 0.16 0.09–0.28 0.04 0.02–0.08 96 92–98
Total 337,844 115 NA
Hazard ratioa NA 0.19 0.08–0.43 NA

CI: confidence interval; HR: hazard ratio; NA: not applicable; VE: vaccine effectiveness.

a Hazard ratio is based on complete vs partial vaccination.

COVID-19-related hospitalisation: admission for at least 24 h with COVID-19 as the primary diagnosis (ICD10 code U07.1); COVID-19-related death: All-cause death with positive RT-PCR test within the previous 30 days; Vaccination was with either mRNA vaccine Comirnaty or Spikevax; Individuals vaccinated with other vaccines (Vaxzevria and COVID-19 Vaccine Janssen) were included in the unvaccinated person-time during the period before vaccine uptake; Partial vaccination: 1 dose ≥ 14 days or 2 doses < 14 days; Complete vaccination: 2 doses ≥ 14 days; Rate: per 1,000 person-years; Confounder-adjusted HR: confounder-adjusted hazard ratio obtained by time-dependent Cox regression with vaccine exposure as time-dependent, adjusted for age group, sex, health region, municipality level European Deprivation quintiles, number of chronic diseases, number of SARS-CoV-2 tests performed in 2021, influenza or pneumococcal vaccine uptake in the past 3 years and time (7-day periods); VE was calculated by (1-HR)*100.

Table 4. COVID-19-related hospitalisations and deaths, incidence, hazard ratios and vaccine effectiveness by mRNA vaccination status and waning effect for individuals aged 80 years and older, Portugal, February–August 2021 (n = 460,820).

Outcome by vaccine status Person-years Events
(n)
Rate Rate ratio 95% CI Confounder-adjusted HR 95% CI VE 95% CI
Hospitalisation
Unvaccinated 60,130 734 12.21 1 NA 1 NA NA
Partial vaccination 32,766 39 1.19 0.10 0.07–0.10 0.45 0.31–0.65 55 35–69
Complete vaccination 129,047 43 0.33 0.03 0.02–0.04 0.18 0.11–0.28 82 72–89
Total 221,943 816 NA
Complete vaccination
14 to 41 days 32,505 10 0.31 0.03 0.01–0.05 0.18 0.09–0.36 82 64–91
42 to 69 days 32,059 11 0.34 0.03 0.02–0.05 0.19 0.09–0.39 81 61–91
70 to 97 days 31,161 16 0.51 0.04 0.03–0.07 0.22 0.12–0.43 78 57–88
 ≥ 98 days 33,321 6 0.18 0.02 0.01–0.03 0.11 0.04–0.29 89 71–96
Hazard ratioa NA 0.41 0.24–0.68 NA
Waning effectb NA 0.62 0.20–1.93 NA
Death
Unvaccinated 60,306 554 9.19 1 NA 1 NA NA
Partial vaccination 32,791 34 1.04 0.11 0.08–0.16 0.44 0.30–0.66 56 35–70
Complete vaccination 129,057 91 0.71 0.08 0.06–0.10 0.19 0.13–0.27 81 74–87
Total 222,154 679 NA
Complete vaccination
14–41 days 32,506 7 0.22 0.02 0.01–0.05 0.14 0.07–0.32 86 68–93
42–69 days 32,062 13 0.41 0.05 0.03–0.08 0.16 0.09–0.30 84 70–91
70–97 days 31,164 20 0.64 0.07 0.05–0.11 0.13 0.08–0.23 87 77–92
 ≥ 98 days 33,326 51 1.53 0.17 0.13–0.22 0.26 0.17–0.40 74 60–83
Hazard ratioa NA 0.42 0.27–0.66 NA
Waning effectb NA 1.80 0.77–4.25 NA

CI: confidence interval; HR: hazard ratio; NA: not applicable; VE: vaccine effectiveness.

a Hazard ratio is based on complete vs partial vaccination.

b VE waning effect was estimated by the HR: 2 doses ≥ 98 days vs 2 doses 14–41 days.

COVID-19-related hospitalisation: admission for at least 24 h with COVID-19 as the primary diagnosis (ICD10 code U07.1); COVID-19-related death: All-cause death with positive RT-PCR test within the previous 30 days; Vaccination was with either mRNA vaccine Comirnaty or Spikevax; Individuals vaccinated with other vaccines (Vaxzevria and COVID-19 Vaccine Janssen) were included in the unvaccinated person-time during the period before vaccine uptake; Partial vaccination: 1 dose ≥ 14 days or 2 doses < 14 days; Complete vaccination: 2 doses ≥ 14 days; Rate: per 1,000 person-years; Confounder-adjusted HR: confounder-adjusted hazard ratio obtained by time-dependent Cox regression with vaccine exposure as time-dependent, adjusted for age group, sex, health region, municipality level European Deprivation quintiles, number of chronic diseases, number of SARS-CoV-2 tests performed in 2021, influenza or pneumococcal vaccine uptake in the past 3 years and time (7-day periods); VE was calculated by (1-HR)*100.

Additionally, for the cohort aged 80 years and older, we did not observe any statistically significant difference between VE estimates in individuals with 98 days or more after the second dose (VE: 89%; 95% CI: 71–96) compared to 14 to 41 days after the second dose (VE: 81%; 95% CI: 64–91) (Table 4).

Vaccine effectiveness against COVID-19-related deaths

Adjusted VE against COVID-19-related deaths for the cohort aged 65–79 years increased from 77% (95% CI: 56–88) to 96% (95% CI: 92–98) from partial to complete mRNA vaccination.

For the cohort aged 80 years and above, VE against COVID-19-related deaths was 56% (95% CI: 35–70) and 81% (95% CI: 74–87), for partial and complete vaccinations, respectively.

VE against COVID-19-related deaths among those with 98 days or more after the second dose (VE: 74%; 95% CI: 60–83), was slightly lower than for those with 14 to 41 days (VE: 86%; 95% CI: 68–93) after the second dose, but was not statistically significant (Table 4).

Ethical statement

Data extraction and linkage were performed on 13 August 2021 by the Shared Services of the Portuguese Ministry of Health in accordance with legal and ethical requirements. All data were anonymised before statistical analysis. The study protocol was approved by the Data Protection Officer and the Ethical Committee of the Instituto Nacional de Saúde Doutor Ricardo Jorge.

Discussion

Our results indicate high levels of protection for all adults aged 65 years and older with the complete vaccination scheme (82% and 94% for hospitalisation and 81% and 96% for mortality across the two cohorts, respectively), supporting the advantage of complete vaccination.

For the complete vaccination scheme, our results for the cohort aged 65–79 years are comparable to other studies conducted in the US and Israel in the population aged 65 and older, which reported a VE of Comirnaty against hospitalisations of 94% and 97.9%, respectively [6,7].

Random variation, different study designs, observational periods and diverse epidemiological and virological contexts may explain the differences observed between studies. Our study examined a period of high COVID-19 incidence at the beginning of the vaccination campaign, which corresponded to the third COVID-19 peak in January–February 2021. Moreover, the SARS-CoV-2 variant of concern Alpha (Phylogenetic Assignment of Named Global Outbreak (Pango) lineage designation B.1.1.7) was predominant during the study timeframe, but our study also includes the period of replacement by the Delta variant (B.1.617.2) in Portugal (from May 2021) [8].

VE estimates varied by age group for both severe outcomes and for complete vaccination, and differences detected between age cohorts were 12 percentage points for hospitalisations and 15 percentage points for mortality. Lower VE estimates observed in the older age cohort may be related to age-associated immunosenescence or waning of vaccine-induced protection, since the cohort aged 80 years and older in Portugal was targeted by the vaccination campaign earlier and had more time elapsed since the second dose. We measured VE by time after the second dose for the cohort aged 80 years and above. Results suggest sustained VE up to 98 days (ca 3 months) after the second dose for hospitalisations with a slight, non-significant decrease in VE for COVID-19-related deaths.

Our findings are consistent with recently published results on VE against hospitalisations in the US general population [9]. Nevertheless, we cannot rule out bias in the VE estimates for the 98 days after vaccination because of delayed data updates for hospitalisations and deaths.

The study has limitations. Regarding the data quality of the electronic registries used, the main dataset used to link data was the NHSU, which contains the unique mandatory health number attributed to each individual in Portugal. However, the NHSU database could have update issues, and can also include occasional/temporary NHS users, which would artificially increase the number of registries and reduce its completeness. Several exclusion criteria were applied to overcome this and the final cohort was comparable to the National Statistics Office estimates for individuals aged 65 years and older (Supplementary Table S3) [10]. The delay of information on hospital discharge might contribute to underrepresentation of this specific outcome and underestimation of estimates for the more recent observation period. Finally, we were not able to estimate VE for other vaccine types (AstraZeneca or COVID-19 Vaccine Janssen) in the cohort 65–79 years because of short follow-up period for two doses.

Conclusions

Our study supports high mRNA VE for the prevention of COVID-19-related hospitalisations and deaths in the population aged 65 years and older with a complete vaccination course. We did not find any evidence of VE reduction up to 3 months after the second dose and during the period of Delta variant circulation. Considering the growing evidence that waning of VE against infection may occur 5 to 6 months after immunisation with two doses, monitoring of VE against severe COVID-19 outcomes is of great importance for decisions on additional vaccine doses and non-pharmacological measures. Use of cohort study designs based on nationwide health records linkage is a feasible approach to monitor VE.

Acknowledgements

The authors would like to acknowledge the Administração Central do Sistema de Saúde (Central Administration of the Health System) for providing health data.

Supplementary Data

Supplement

Conflict of interest: None declared.

Authors’ contributions: BN was involved in the conceptualisation of the study, performed statistical analysis, results interpretation and drafting of the first version of the manuscript. IK collaborated in the conceptualisation of the study, results interpretation, drafting of the first version of the manuscript. APS, PPL, AM, APR, and CMD collaborated in the conceptualisation of the study, results interpretation and provided critical comments on the manuscript. CC, JL, and DS collaborated on the study design, performed data linkage and critically reviewed the manuscript.

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