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. 2021 Sep 28;16(9):e0255133. doi: 10.1371/journal.pone.0255133

Exploring the role of epidermal growth factor receptor variant III in meningeal tumors

Rashmi Rana 1,*, Vaishnavi Rathi 1, Kirti Chauhan 1, Kriti Jain 1, Satnam Singh Chhabra 2, Rajesh Acharya 2, Samir Kumar Kalra 2, Anshul Gupta 2, Sunila Jain 3, Nirmal Kumar Ganguly 1, Dharmendra Kumar Yadav 4,*
Editor: Timir Tripathi5
PMCID: PMC8478197  PMID: 34582442

Abstract

Meningioma is the second most common type of intracranial brain tumor. Immunohistochemical techniques have shown prodigious results in the role of epidermal growth factor receptor variant III (EGFR vIII) in glioma and other cancers. However, the role of EGFR vIII in meningioma is still in question. This study attempt the confer searches for the position attained by EGFR vIII in progression and expression of meningioma. Immunohistochemistry technique showed that EGFR vIII is highly expressed in benign tumors as compared to the atypical meningioma with a highly significant p-value (p<0.05). Further analysis by flow cytometry results supported these findings thus presented high intensity of EGFR vIII in low grades of meningioma. The study revealed that the significant Ki 67 values, to predictor marker for survival and prognosis of the patients. Higher expression of EGFR vIII in low grades meningiomas as compared to high-grade tumors indicate towards its oncogenic properties. To our knowledge, limited studies reported in literature expressing the EGFR vIII in meningioma tumors. Hence, Opinions regarding the role that EGFR vIII in tumorigenesis and tumor progression are clearly conflicting and, therefore, it is crucial not only to find out its mechanism of action, but also to definitely identify its role in meningioma.

Introduction

Meningiomas are predicted to constitute 13–26% of all intracranial brain tumors. They are originated from non-neuroepithelial progenitor cells and are the second most abundant tumors. Most of them are benign and asymptomatic belonging to the WHO grade I, based on histopathological classification [1]. WHO Grade II are atypical meningiomas (5–7% of all cases) and WHO Grade III is malignant meningiomas (0.17/100.000/year) [2]. The incidence rate is estimated to be 2-7/100.000/year in females and 1-5/100.000 in males [3]. The occurrence in children and adolescents is rare in both sexes [4]. Presently used therapies for the treatment of meningioma include; surgery, radiation, and stereotactic techniques [5]. Surgical therapies comprise of complete or partial resection of the tumor. However, after being removed, recurrence of the tumor is seen in both types of resection policies. The overall recurrence rate of meningiomas has been reported to be 20% approximately. Higher rates of recurrence persist in partial or incomplete resection of the tumor and more aggressive variants [6]. Diagnostic tools include imaging techniques like computerized tomography and magnetic resonance imaging. Immunohistochemical studies have been used to check the expression of various receptors. Epidermal growth factor receptor (EGFR) has been widely studied and known to overexpress in various types of cancers. Belonging to the RTK family, it regulates pathways linked with cell proliferation and differentiation of epithelial and hence, origin of tumors [7, 8].

Innumerable dysregulations in metabolism like EGFR gene amplification, mutations, and protein overexpression often alters the EGFR signaling [9]. EGFR vIII mutations (in extracellular domain of EGFR) may lead to ligand-independent receptor activation that denotes the transformed functional features [10]. However, some mutations are cancer type specific such as EGFR vI (amino-terminal deletion), EGFR vII (deletion of exons 14–15), EGFR vIII (deletion of exons 2–7). Among these variants, EGFR vII and EGFR vIII are established to be constitutively active and oncogenic [11].

Deletion of exons 2 to 7 of the EGFR gene causes an in-frame deletion of 267 amino acids from the extracellular domain of the receptor and can be found in 19% of the GBM patients [12]. EGFR vIII is an unusual tyrosine kinase that lacks a considerable part of the full-length EGFR extracellular domain. Thus, it fails bind the ligand therefore it has greater oncogenic potential when compared to the wild-type EGFR [13]. The much weaker kinase activity of EGFR vIII accounts for the increased level of tumor growth. Its expression is seen only in oncogenic cells and not in normal tissue. It is also known to be expressed in other human cancers such as breast, lung, ovarian, and medulloblastomas [14]. EGFR vIII, in combination with its unique extracellular domain (which lacks exons 2–7), possesses cancer-specific expression that fascinates many neuro-oncology researches. These features of EGFRvIII render it to be a potential target for antibody-based targeted therapies [15]. Overexpression of EGFR in meningioma is well observed but role of its mutated form in still in question [16].

The present study is an attempt to evaluate the role of EGFR vIII in meningeal tumors by immunohistochemical and flow cytometric methods. Analysis of DNA sequences and western blot for EGFR vIII were also performed to assess its role in tumor samples. However, contradictory results were obtained. The IHC findings suggest that EGFR vIII could be a part of tumorgenicity of meningiomas but other analytical techniques does not support the claim. Hence, its oncogenic role remains in questions and EGFR vIII cannot be proved as a biomarker. A comprehensive overview of EGFR vIII in Meningioma tumor as shown in Fig 1.

Fig 1. The image presented here, depicts a comparative illustration of EGFR and its mutated form, EGFR VIII, formed after the deletion of 2–7 exons in the extracellular domain of parent protein molecule.

Fig 1

Due to this mutation, the EGFR becomes more oncogenic. However, the study given her cannot validate that in meningioma but introduce further questions about role of EGFR vIII in oncogenicity and tumorogenecity in tumor growth and formation. It also indicates towards the probable need of advanced techniques to detect the EGFR vIII in meningioma tumor. Moreover, if EGFR vIII can be used as therapeutic target is still in question.

Materials and methods

Patient selection and sample collection

All tissue associated with the disease were obtained from patients during surgery, performed for the resection of the meningiomas, consecutively operated between the dates of 10.01.2018 and 31.12.2019 in the department of neurosurgery at Sir Ganga Ram Hospital-Delhi, India. These were the recently diagnosed patients whose clinical data and investigations were obtained from the clinicopathological referral sheets. Informed consent was obtained from each patient and protocols were approved by the Sir Ganga Ram Hospital, Human Ethical Committee (Ref no. EC/10/17/1270). Delhi, India. All experiments were carried out in accordance with relevant guidelines and regulations. Formalin-fixed paraffin-embedded tissues of tumors were used for immunohistochemical analysis for expression of EGFR vIII in meningioma patients. The histological sections were reviewed and all tumors were graded according to WHO criteria 2001.

Inclusion criteria, Patients detected with meningioma tumors were included in this study.

Exclusion criteria, Patients below the age of 18 years or with intraspinal or non-primary meningioma and those who were unwilling to give consent were excluded.

Tissue specimen preparation for immunohistochemistry analysis

A section of 5-micron thickness collected on poly-L-lysine coated slides was subjected to immunohistochemistry by indirect immunoperoxidase technique. Followed by resection tissues samples were stored in 10% formalin for fixation then embedded in the paraffin blocks. Briefly, the tissue section was cut from formalin-fixed paraffin-embedded paraffin blocks then the sections were dew axed in two changes each in xylene and alcohol and stabilized in 0.1 M phosphate buffer saline (PBS) solution. Antigen retrieval was performed by high-temperature unmasking using antigen retriever in two cycles (95°C for 10min and at 98°C for 5 min). Sections were then cooled at room temperature and immersed in 3% methanol hydrogen peroxide for blocking endogenous peroxidase activity. Following blockage of non-specific binding sites, protein block is used (10 min), then sections were incubated in primary antibody (anti-EGFRvIII, clone DH8.3 monoclonal antibody and molecular weight ~140 kDa; 134.28 kDa, Merck, EMD Millipore, Temecula, CA, USA) for 1hr 30mins, followed by incubation in secondary antibody for 30 min then the addition of Streptavidin HRP (15Min). The antigen-antibody complex was visualized by using diaminobenzidine (DAB) as the chromogen. Sections were counterstained with Harris Hematoxylin, dehydrated, and mounted in DPX.

Ki-67 proliferation marker

Histopathological grade and proliferative index determined by Ki-67 immunohistochemical expression. Immunohistochemistry for Ki-67 was carried out following the streptavidin-biotin-peroxidase method (Dako, USA) according to the protocol [17]. All immunohistochemical evaluation was performed blind concerning the clinical information. The presence or absence of brain invasion was noted in all tumors. Meningioma with brain invasion was classified as grade II meningioma.

Immunohistochemical evaluation of EGFR vIII

Slides stained for EGFR vIII were reviewed by the observers blinded to the classification of the tumor subtype. Positive controls (placenta and endometrium) were included in each staining run. In the negative controls, the primary antibodies were omitted. The percentage of immunoreactive cells (staining percentage) were estimated by inspection and scored from 1+ to 3+. The intensity was subjectively evaluated as 1+ (weak staining), 2+ (moderate staining), or 3+ (strong staining). The EGFR vIII expression/intensity of the tumor cells was rerecorded as 1+ (< 30% positive cells), 2+ (<60% staining), or 3+ (>60% staining) respectively. An immunohistochemical score (IHS) was calculated as the product of an estimate of the percentage of immunoreactive cells (staining percentage (SP) score) and the estimate of the staining intensity (staining intensity (SI) score). Analyses were conducted by the investigators on electronic images. An SI-score was calculated for each tumor and used in statistical analyses. Whole-tissue sections were evaluated using a conventional microscope (Nikon Eclipse 50i). All cases were analyzed individually by two of the authors, and discrepancies in findings were discussed and a combined consensus was attained. Each meningioma patient was given an ID unique to this study, and the investigators were consequently unaware of any case-specific clinical data during analysis.

Flow cytometry

Total protein was isolated and quantified with the BCA method from tissue specimens of meningioma patients. 100μg of protein was suspended in phosphate buffer saline (PBS) with 5mM EDTA and incubated at RT for 15 minutes. The protein samples were treated with anti-EGFR vIII primary antibody (Merck, EMD Millipore, Temecula, CA, USA) at a dilution of 1,500 and then incubated at 4 ºC overnight on rotation. Further, treatment with Alexa Fluor 488-conjugated secondary antibody (Invitrogen) at 1, 1000 dilution and incubation at RT for 1 hour was performed. The samples were further washed with PBS containing 5 Mm EDTA. Negative control was obtained by incubating the diluted protein sample, or in the absence of primary mAb. Protein samples for the incubations were run as duplicates, and a minimum of two experiments was done for each patient. Data were acquired in a conventional flow cytometer (FACS Aria III BD Biosciences, San Jose, CA) and analyzed with the BD Facs Diva Software (FACS Diva, version 6.6). 50000 events were recorded at a flow rate of 1.0 event per second. All antibodies were used following manufacturer instructions and protocol.

Real time PCR

Total RNA extraction and cDNA synthesis

Tumor specimens were stored in -80 °C for upto three months. RNA extraction were prepared and examined to ensure that the tissue samples were located in representative areas of the tumors.

The RNA extracted from tumor tissue and further purity and quantity tested using Nano drop (Thermo scientific) instrument. The RNA quality was assessed by agarose electrophoresis. An aliquot of 1500ng of total RNA was reverse transcribed using High capacity cDNA Reverse Transcription Kits (applied biosystems Thermo Scientific) The reaction was conducted for 10 mins at 25ºc and then at 37ºc for 120 mins in the presence of oligo (dT) primers, and finally the enzyme was inactivated at 85 ºc for 5 mins, according to the manufacturer’s instructions. The RT-PCR amplification was performed using Agilent Technologies Stratagene Mx3005P.

Quantitative and qualitative RT-PCR

The following primers located in EGFR exons 1 and 8 were used to generate products of 92 or 893 bp for the EGFRvIII sequence, respectively: The two sets of primers (Tm: 52–60 ºC) used were: 1st set of EGFRvIII- Ex1-Forward: GAGTCGGGCTCTGGAGGAAA; EGFRvIII- Ex8-Reverse: CCATCTCATAGCTGTCGGGCC [18] and 2nd set of EGFRvIII- Ex1-Forward: GGGCTCTGGAGGAAAAGAAA; EGFRvIII- Ex8-Reverse: TGATGGAGGTGCAGTTTTTG. PCR was performed with Taq-Polymerase (Thermo) for 15 min at 95 °C, followed by 35 cycles for 30 sec at 95°C, 30 sec at 60 °C or 58 °C and 1 min at 72°C. qPCR was performed using stratagene Mx 3005P (Agilent Technologies). The analysis was performed with the use of SYBR green fluorescently labeled dye and the reference β-actin amplicons. The primers sequence sets were used following EGFRvIII-Ex1-Forward: GAGTCGGGCTCTGGAGGAAA; EGFRvIII-Ex8-Reverse: CCATCTCATAGCTGTCGGGCC and 2nd set of EGFRvIII-Ex1-Forward: GGGCTCTGGAGGAAAAGAAA;EGFRvIII-Ex8-Reverse:TGATGGAGGTGCAGTTTTTG. Amplification was performed in 20-μl reaction mixture, containing cDNA amount corresponding to RNA concentration 50 ng of total RNA. The cDNA was amplified in 40 cycles: 20s denaturation at 95 °C, 30s annealing at 60 °C and 30s elongation at 72°C. The reads were analyzed using a relative quantification (RQ) method that includes efficiency correction. The above method allowed detecting the reference β actin but EGFRvIII expression was not found in meningioma tissue specimens.

DNA sequencing

Tumor DNA was extracted using the DNeasy Tissue Kit (Qiagen) according to the manufacturer’s instructions. Genomic DNA from EGFRvIII-positive samples was used for long-range PCR to make sure the genomic deletion within intron 1 and intron 7. PCR primers and sequence primers were synthesized from the previous report with some modifications [19]. Long-range PCR was done using Platinum Taq High Fidelity DNA polymerase (Thermo) with 50 to 100 ng of genomic DNA according to the manufacturer’s protocol. DNA was amplifying in 32 cycles consisting conditions, began with an initial denaturation step at 95 °C for 1 min, followed by 14 cycles of 98 °C denaturation for 10s, 56°C annealing for 30s and elongation at 72 °C for 90s. PCR products were visualized by 0.8% agarose gel electrophoresis and the breakpoint was confirmed by direct sequencing.

Western blot analysis

Tumor tissue protein quantification was performed using Pierce BCA Protein Assay (Thermo Fisher Scientific, Rockford, IL) according to the manufacturer’s recommended Micro plate assay procedure. Absorbance was measured with a Spectra Max M5 multi-mode microplate reader using Soft Max Pro data acquisition and analysis software (Molecular Devices, Sunnyvale CA). Tumor tissue protein were lysed in a modified lysis buffer and resuspended in denaturation buffer (4% CHAPS, 50 mM DTT, 8M Urea). Proteins were separated using 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis in Tris/Glycine/SDS running buffer and transferred to Immun-Blot PVDF membrane (all reagents and supplies from Bio-Rad, Hercules, CA). Immunoblotting was performed with the following primary antibody: anti-EGFR vIII primary antibody (anti-EGFRvIII, clone DH8.3 monoclonal antibody, Merck, EMD Millipore, Temecula, CA, USA). Blots were washed and incubated with appropriate HRP-conjugated secondary antibody (A9917, Sigma-aldrich, MO, USA). Novex ECL Chemiluminescent Substrate Reagent Kit (invitrogen, Thermo scientific, USA) was using developing the membrane. Image was visualized in chemidoc (iBright1500, Invitrogen) and analysis software.

Statistical analysis

All statistical testing was conducted with the statistical package for the social science system version SPSS 17.0. A P value of <0.05 was considered statistically significant. Continuous variables are presented as mean ± SD, and categorical variables are presented as absolute numbers and percentages. Association between meningioma grades and EGFR vIII intensity /expression was analyzed using the Chi-squared test. The comparison of mean Ki 67 and EGFR vIII expression between meningioma grades II and I performed using the Student’s t-test.

Results

Clinical characteristics of meningioma patients are depicted in Table 1. The tumors were originally classified according to the WHO classification 2001 [1]. Tumor tissues were formalin-fixed and embedded in paraffin. Hematoxylin/eosin-stained sections were examined microscopically to verify diagnoses and to analyze the Ki67 score. The Ki-67 protein is a cellular marker for proliferation. We demonstrated the Ki-67 labeling index level in meningioma grades I and II in Table 2. Ki-67 is the only independent predictor of both tumor recurrence and overall survival, which includes all the stages and grades under them. Ki67 blockage either by antibody microinjection or with antisense oligonucleotides leads to the capture of cell proliferation shown in Fig 2.

Table 1. Patients clinical characteristics (n = 56).

S. No. Variables Frequency
1 Age
< 50 35 (19.6)
≤ 50 21 (11.76)
2 Meningioma grades (n)
I 34 (60.7)
II 22 (39.3)
3 Seizures
Yes 35 (62.5)
No 21 (37.5)
4 Headache
Yes 43 (76.8)
No 13 (23.2)
5 Vomiting
Yes 21 (37.5)
No 35 (62.5)
6 Extent of resection
(GTR, > 95%) 53 (94.6)
STR, > 85–95% 3 (5.4)
7 Neurological deficit
Yes 29 (51.8)
No 27 (48.2)

Table 2. Role of Ki67 marker in different grades of meningioma (Student’s t test).

MG N Ki-67 (mean± SD) P value
MG I 34 4.44 1.07 <0.001**
MGII 22 9.14 2.60

**Highly significant p-value<0.001.

Fig 2. These figures show the expression of Ki-67 in two different grades of meningioma (a) expression of Ki-67 in meningioma grade-I; (b) Expression of Ki-67 in meningioma grade-II.

Fig 2

Immunohistochemical analysis

Microscopic examination of the immunostained slides was done by two of the authors (RR and SJ) in collaboration using a Nikon Eclipse 50i microscope. Tissue specimens were classified based on the pathological grade and had the following distribution, benign 34/56 (60.7%) and atypical 22/56 (39.3%). Immunostained expression divided the cases into three hypothetical groups’ i.e. low intensity (22/56), moderate-intensity (10/56), and strong intensity (24/56). A significant association between the intensity of EGFR VIII staining and meningioma grades was observed based on scores (1+, 2+, 3+) Fig 4. The majority of samples demonstrated a moderate staining intensity (SI). Generally, the atypical meningioma (grade II) exhibited a low-intensity score of EGFR vIII staining, while benign meningioma (grade I) samples demonstrated a higher intensity of staining. Specifically, 70.6% (24) of samples had intensity scores of 3+, and 29.4% (10) had intensity scores of 2+ and 0% (0) had intensity scores 1+ respectively depicted in Fig 3.

Fig 3.

Fig 3

These figures show intensity scores of immunohistochemical staining (A) Meningioma stained with anti-EGFR showing negative staining in meningioma grade I (B) 1+ weak staining (C) 2+ moderate staining (D) 3+ strong staining (E) Meningioma stained with anti-EGFR showing negative staining in meningioma grade II (F) 1+ weak staining (G) 2+ moderate staining (H) 3+ strong staining. Original magnification for all images was 40 ×. Images are arranged as follows, on the left side (A), (B), (C), and (D) are of MG grade I. On the right side (E), (F), (G), and (H) belongs to meningioma grade II.

Data revealed that benign meningioma stain intensity more strongly than atypical meningioma and was statistically significant (p < 0.001) shown in Table 3 and Fig 3, 100% of atypical meningioma had EGFR vIII intensity score of 1+ shown in Table 3. Therefore, a statistically significant association between the percentage of tumor cell immunoreactivity/expression and histopathologic therapeutic (p < 0.001) is established and depicted in Table 3. The correlation between meningioma grades (benign and atypical) and EGFR vIII expression shown in Fig 4 directs that EGFR vIII can be employed as a therapeutic marker in the treatment of meningioma. The occurrence of patients only once in the Fig 5 represents that recurring meningiomas are not considered in this study.

Table 3. EGFR vIII staining intensity/expression of meningioma samples (grade I and II), n (%).

MG Grades Total EGFR VIII Intensity/Expression p-value
1+ 2+ 3+
I 34 0 (0%) 10 (29.4%) 24 (70.6%) <0.001**
II 22 22 (100%) 0 (0%) 0 (0%)
Total 56 22 10 24

**Highly significant p-value<0.001.

Fig 4. Percentage of EGFR vIII staining in the human meningioma grade I and II by histopathological classification.

Fig 4

Tumor sections were analyzed concerning the percent of each sample exhibiting staining for EGFR vIII. The percentages of immunoreactive cells (staining percentage) were estimated by inspection and scored from +1 to +3, benign meningioma (grade I) 1+ 0% (0); 2+ 29.4% (10) and 3+ 70.6% (24) of a samples had higher intensity respectively. And atypical meningioma (grade II) were stained as follows, 1+ (weakly stained) 100% (22); 2+ (moderately stained) 0% (0); 3+ (strongly stained) 0% (0).

Fig 5. Generation of EGFRvIII− and EGFRvIII+ sublines as determined via FACS.

Fig 5

MG Grade I representing 25.8% EGFRvIII (Alexa flour 488) positive cells (SSC vs Alexa Flour 488) while Grade II representing 11.1% EGFRvIII (Alexa flour 488) positive cells (SSC vs Alexa Flour 488). There is about 2 folds decrease in EGFR V3+ cells in grade II as compared to grade I. Unlabelled cells were used as controls in both grade I and grade II.

Flow cytometric detection

The study for the detection of EGFR vIII included Grade I (n = 34) and Grade II (n = 22) meningioma patients. The EGFR vIII parameter staining was performed on both the sets that enabled us to compare the EGFR vIII expression between the two groups. Flow cytometric characterization of EGFR vIII in MG grade I and grade II are shown in Fig 5. When percentages of EGFR-positive cells after normalized subtraction were compared, a significant reduction was found in the mean value of Grade II (12.9%) as compared to the mean value of Grade I (28.2%) meningioma patients. The two groups mentioned, exhibited highly significant P values that are smaller than 0.05 Fig 2. The standard deviation between the groups observed was 8.38% and 4.34% in Grade I and Grade II meningioma patients respectively. Consequently, statistically significant flow cytometric results of EGFR vIII expression in the percentage of meningioma tumor cells for both the sets (p < 0.001) were obtained and presented in Table 4.

Table 4. Expression of FACS EGFR VIII positive cells (%) in meningioma grade I and II patients.

MG Grades FACS EGFR VIII positive cells (%) p-value
N Mean Std. Deviation
1 34 28.17% 8.38% <0.001
2 22 12.89% 4.34%

EGFR variant III mRNA level in meningioma

Quantitative real-time RT-PCR revealed pronounced EGFR vIII mRNA expression that was absent in the majority of meningioma tissue specimens analyzed. The results from this analysis were in accordance with the results of the immunoblotting analysis of these tumors as shown in S1A–S1C Fig in S1 Raw images.

DNA sequencing result

Genomic DNA was isolated from meningioma tissue specimens. We have run the gel of PCR product and found unclear appearance of bands in agrose gel then run on DNA seq for the same. Therefore, we did not found any results of EGFRvIII in meningiomas as RT PCR results are corresponding to DNA sequencing result shown in S2A–S2C Fig in S1 Raw images.

Identification/expression of EGFR vIII in meningioma using western blot

Protein lysates from a number of the meningiomas analyzed by Immunoblotting analysis. We did not found expression of the EGFR vIII in grades I and II tumor as shown in S3 Fig in S1 Raw images. The detection of EGFR vIII was not reflected in meningiomas specimens.

Discussion

Meningiomas are intracranial tumors arising from the meninges of the brain and spinal cord. Despite being slow growing, they can be fatal and life threatening for suffering patients. Due to the persistent risk of relapse, there is a need to seek an alternate therapy that could be implemented to diminish the cases of recurrence [20]. Thus, the study provided tries to take step ahead towards this target. Recently several studies have been published which aims at seeking a potential target that may help in preventing and predicting their recurrence [7, 21, 22]. EGFR has already proven to be a potential target to deal with the tumors like breast, lung, and glioma, etc. whereas the capability of its variant III as a drug target is yet to be discovered. EGFR vIII is known to promote angiogenesis by activating c-myc [23] and tumor growth by activating signal transducers and activators of transcription (STAT) and P13-Akt pathways. Overexpression of EGFR is observed in 40% of the primary glioblastomas [24]. Interestingly, overexpression of EGFR vIII is observed in 50–60% of EGFR-amplified glioblastomas [25]. However, its role in the progression of the disease and survival of the patients is controversial. Some studies suggest a better prognosis of the patients with elevated EGFR vIII whereas others have found no difference in survival [26, 27]. This study does not contain the survival parameter of the patients. In this study, we determined the expression of EGFR vIII in meningiomas by immunohistochemical analysis of formalin-fixed and parafilm embedded tissues. We presented our data concerning the percent of immunoreactivity in meningioma samples and found a significant correlation between the percentage of immunoreactive staining for EGFR vIII and histopathologic grades.

Here, the study aims at assessing the role of EGFR vIII as a tumorigenic factor in meningiomas. The study was constructed to establish a correlation between EGFR vIII expression and its histopathological grades. Flow cytometric observations support the immunostaining findings. Further, statistical analysis was performed on the results obtained for their validation. We demonstrated that the intensity/expression of EGFR vIII is more prominent in lower grades of meningioma. Our data reveal a significantly greater degree of EGFR vIII expression in benign tumors as compared to atypical meningioma. Concerning the percentage of immunoreactivity, the malignant grade of meningioma demonstrated lower scores as compared to the benign and atypical meningioma. Statistical analysis proved this finding and revealed that expression of EGFR vIII is inversely correlated with tumor grades in meningioma. However, conflicting studies have also been reported which may arise from the use of variable assay methodologies. It was shown to be of no significant importance in breast cancer and does not play any role in its malignant phenotype through the EGFR wild type is positive [21]. Further, this study involves the flow cytometric analysis of the samples suspended in PBS and treated with specific primary and secondary antibodies. The immunohistochemical analysis combined with the FACS outcomes supports the probable capabilities of the EGFR vIII being an adequate marker for the diagnosis and treatment of meningioma tumors. We further, attempt to validate the data at RNA levels for corresponding sequences. However, the results obtained does not support the claim made by immunohistochemical studies. mRNA related to EGFR vIII was not detected in any meningioma tumor samples analyzed. These findings are in accordance with a previously reported study which compares the role of EGFR and EGFR vIII in meningioma and glioblastoma tumors. The authors came to the conclusion that this variant is probably not involved in meningioma oncogenesis and progression [19]. Furthermore, a number of other studies reported the similar outcomes [28]. Additionally, expression of EGFR vIII was not observed in normal tissues that infers towards its promising candidature for targeted therapy in EGFR vIII harboring tumors, which is also supported by prior studies [29, 30]. Though it does not have any prognostic value, but its status can be helpful in glioblastoma patients in order to provide EGFR vIII targeted therapy.

Monoclonal and polyclonal antibodies aimed against EGFR vIII exhibit cross-reactivity to wild-type EGFR thus this approach of treatment impart its challenges. However, a recombinant antibody that is specific for EGFR vIII with less cross-reactivity has been developed. The antibody comprises of two anti-EGFR vIII single chains Fv’s linked together and a human IgG1 Fc component [31]. Due to its high expression in cancerous cells, peptide-based targeted vaccines for its neoplasm have also been developed [32]. An immunotherapeutic strategy based on the adoptive transfer of genetically modified T-cells redirected to destroy EGFR vIII in glioblastoma cases has also been developed [33]. A study reported preclinical assessment of a bispecific antibody (bscAbs) i.e. bispecific T-cell engager (BiTE), bscEGFRvIIIxCD3 which showed that it activates T cells to mediate potent and antigen-specific lysis of EGFR vIII. Administration of this yielded prolonged survival in mice with well-developed intracerebral tumors and complete cure at rates up to 75% was achieved [3447]. A novel monoclonal antibody (mAb) known as D2C7 reacts with both the wild-type epidermal growth factor receptor and (EGFRvIII) (both of which are major glioblastoma driver oncogenes) overexpressed on the surface of cancer cells. This immunotoxin induces secondary immune responses through the activation of T cells with being inherent tumoricidal [4860]. Development of these types of strategies and treatment approaches are required in meningioma.

Through this study, we indicate the antagonistic expression of the EGFR vIII as compared to the EGFR in meningiomas. Although, further studies and strong evidences are required to claim this fact as validating studies gave contradictory results. We further plan to explore EGFR vIII, its expressions, and behavior in different types of tumors. The association of EGFR vIII and meningioma grade is a potential new avenue for therapeutic intervention, either as adjuvant treatment or in combination with radiation therapy. Additional clinical studies will be needed before EGFR vIII can be incorporated into clinical practice. This could be expected to substantially expand further shortly.

Conclusion

The study could not validate the findings obtained in the preliminary assessment. Thus, a significant conclusion cannot be drawn from this analysis. Rather, the study poses numerous questions on the conventional findings and demands attention towards oncogenecity of EGFR vIII in meningioma. This study surely point towards the potentialities of the variant in number of tumors but cannot validate the results by conventional methods. Hence, further advanced techniques could be helpful in this regard. Moreover, it can also be said that EGFR vIII does not have any significant role in meningioma. Henceforth, extensive studies are required in this aspect.

Supporting information

S1 Raw images

S1 Fig. EGFR vIII RT-PCR Result (A) Standardized PCR cycle (B) amplification plot showing β-actin (reference material) (C) CT value of assessed samples expressed the beta-actin (reference), result showed that the expression of EFGR vIII was not detected in grade I and grade II meningioma using qRT-PCR. S2 Fig. Screening and mapping of EGFR vIII deletions in MG (A) Design of the RTPCR primers specific for the EGFR vIII mutant. (B) Design of mapping PCR primers corresponding to the EGFR Viii (C) No DNA sequence results seen. S3 Fig. Western blotting result by Anti-EGFR vIII antibody not detected any band of EGFR vIII in meningioma (Grade I & II)

(PDF)

Acknowledgments

R.R. thankful to Sir Ganga Ram Hospital, Delhi, India for providing the necessary support. We are thankful to Ms. Parul Chug support to statistical analysis.

Consent to participate

Informed consent was obtained from all participants included in the study.

Abbreviations

BCA

Bicincconinic Acid Assay

BiTE

Bispecific T-cell engager

bscAbs

Bispecific antibody

DAB

3,3’-Diaminobenzidine

DPX

Dibutylphthalate Polystyrene Xylene

EGFR vIII

Epidermal Growth Factor Receptor variant III

EGFR

Epidermal Growth Factor Receptor

FACS

Fluorescence-Activated Cell Sorting

Fc

Constant Fragment

FFPE

Formalin-Fixed Paraffin-Embedded

Fv

Variable Fragment

GBM

Glioblastoma Multiforme

HRP

Horse Reddish Peroxidase

IHC

Immunohistochemistry

IHS

Immunohistochemical Score

mAb

Monoclonal Antibody

MG

Meningioma

NSCL

Non-Small Cell Lung Cancer

P13-Akt

Phosphatidylinositol 3-kinase and Akt (protein kinase B).

PBS

Phosphate Buffer Saline

RTK

Receptor Tyrosine Kinase

SD

Standard Deviation

SI

Staining Intensity

STAT

Signal Transducers and Activators Of Transcription

WHO

World Health Organization

Data Availability

All relevant data are within the manuscript and its Supporting information files.

Funding Statement

This study was supported by the Sir Ganga Ram Hospital (SGRH) Delhi, India and funded by the Indian Council of Medical Research (ICMR), Delhi, India (No.: VIR/24/2020/ECD-I.

References

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Decision Letter 0

Timir Tripathi

25 Jun 2021

PONE-D-21-18174

Exploring the role of Epidermal Growth Factor Receptor Variant III in meningeal tumors

PLOS ONE

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5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: This study attempts the confer searches for the position attained by EGFR vIII in progression and expression of meningioma. Immunohistochemistry technique showed that EGFR vIII is highly expressed in benign tumors as compared to the atypical meningioma with a highly significant p-value (p<0.05). The study id good to explore EGFR vIII in Meningioma. In my opinion paper need to minor revision.

1. In page 4, reference no. 10 (Ge at al., 2002), explaining ligand independent activation of EGFR vIII should be elaborated. Further studies could be carried out on this aspect of the mutant.

2. Page 5, line no. 92 there is a grammatical mistake. ‘Levels’ should be in singular form i.e. ‘level’.

3. Method for Ki-67 analysis should be added in the material and method section.

4. Details of primary antibody of EGFR vIII used for immunohistochemistry need to be provided.

5. In the section of DNA analysis, melting temperature (Tm) of primers used should be mentioned.

6. Details of Chemidoc and the software used for the analysis of blots are required to be given.

7. There is a typing error in detail of Fig. 1, ‘her’ should be written as ‘here’.

8. There is a grammatical error in page 5, line no. 100, DNA sequences should be written as ‘DNA sequence’.

Reviewer #2: Rana et. al. reported EGFR vIII in progression and expression of meningioma. . Hence, Opinions regarding the role that EGFR vIII in tumorigenesis and tumor progression are clearly conflicting and, therefore, it is crucial not only to find out its mechanism of action, but also to definitely identify its role in meningioma. This study need to minor revision for publication.

1. Please elaborate the correlation of gender with EGFR vIII in your study.

2. Discuss about the effect of age on the neurological deficit factor of meningioma.

3. In the section material and methods, RT- PCR parameters used should be added.

4. As mentioned in the text, the tissue samples were stored in -80 degree Celsius. Can you elaborate the extent of degradation in the samples?

5. I would suggest the addition of protocol followed for quantitative PCR.

6. Discuss about the duration of exposure with antibodies in western blotting.

7. Under the section results, line 351-352, pg. no. 20 has some grammatical error.

Reviewer #3: Author reported potentialities of the variant in number of tumors but cannot validate the results by conventional methods and further advanced techniques could be helpful in this regard. Moreover, it can also be said that EGFR vIII does not have any significant role in meningioma. This study need minor correction for before publication.

1. In your study, emphasis is given on Ki-67 proliferation. Its significance in this study should be discussed thoroughly.

2. Authors should provide their perspective for non-significant results by different techniques used.

3. Case recurring meningiomas should be discussed by the authors.

4. In the section material and methods, provide the concentration of formalin used for fixation of tissues.

5. Page 23, line 414, ‘targeting’ should be written as ‘targeted’.

6. Under the section discussion, cross-reactivity of antibodies should be discussed briefly.

7. Discuss the future prospects of this study.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Abhishek Kumar Singh

Reviewer #2: Yes: Yogesh Kumar

Reviewer #3: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Sep 28;16(9):e0255133. doi: 10.1371/journal.pone.0255133.r002

Author response to Decision Letter 0


8 Jul 2021

Response to Reviewers comments

Title: Exploring the role of Epidermal Growth Factor Receptor Variant III in meningioma

Authors: Rashmi Rana1*, Vaishnavi Rathi1, Kirti Chauhan1, Kriti Jain1, Satnam Singh Chhabra2, Rajesh Acharya2, Samir Kumar Kalra2, Anshul Gupta2, Sunila Jain3, Nirmal Kumar Ganguly1, Dharmendra Kumar Yadav4*

Authors are thankful to the reviewers for their comments which are valuable and helped in improving the content and quality of the article “Exploring the Role of Epidermal Growth Factor Receptor Variant III in meningioma”. In the revised version of the manuscript, corrections are highlighted in blue color for the convenience of reviewers.

Reviewer 1

This study attempts the confer searches for the position attained by EGFR vIII in progression and expression of meningioma. Immunohistochemistry technique showed that EGFR vIII is highly expressed in benign tumors as compared to the atypical meningioma with a highly significant p-value (p<0.05). The study id good to explore EGFR vIII in Meningioma. In my opinion paper need to minor revision.

Response: Authors thankful for appreciation of the work. All the issues related to the manuscript has been resolved and revised the manuscript accordingly.

Comments: In page 4, reference no. 10 (Ge at al., 2002), explaining ligand independent activation of EGFR vIII should be elaborated. Further studies could be carried out on this aspect of the mutant.

Response. Thank you for valuable suggestion. We made changes according to suggestion of reviewer and error has been corrected in the text.

Comments: Page 5, line no. 92 there is a grammatical mistake. ‘Levels’ should be in singular form i.e. ‘level’.

Response. Thank you for valuable suggestion. We made changes according to suggestion of reviewer and error has been corrected in the text.

Comments: Method for Ki-67 analysis should be added in the material and method section.

Response: Thank you for valuable suggestion. We made changes according to suggestion of reviewer and added in the main text of manuscript.

Comments: Details of primary antibody of EGFR vIII used for immunohistochemistry need to be provided.

Response: We made changes according to suggestion of reviewer and added in main text.

Comments: In the section of DNA analysis, melting temperature (Tm) of primers used should be mentioned.

Response: Thank you for valuable suggestion, DNA analysis, melting temperature (Tm) of primers details have been added in main text.

Comments: Details of Chemi-doc and the software used for the analysis of blots are required to be given.

Response: The Chemi-doc and the software used for the analysis of blots details been added in revised Manuscript.

Comments: There is a typing error in detail of Fig. 1, ‘her’ should be written as ‘here’.

Response: Thank you for valuable suggestion, Error has been corrected in the main text.

Comments: There is a grammatical error in page 5, line no. 100, DNA sequences should be written as ‘DNA sequence’.

Response: Thank you for valuable suggestion, sentences has been changed according to suggestion of reviewer. Error has been corrected in the text.

Reviewer 2

Rana et. al. reported EGFR vIII in progression and expression of meningioma. . Hence, Opinions regarding the role that EGFR vIII in tumorigenesis and tumor progression are clearly conflicting and, therefore, it is crucial not only to find out its mechanism of action, but also to definitely identify its role in meningioma. This study need to minor revision for publication.

Response: Authors thankful for appreciation of the work. All the issues related to the manuscript has been resolved and revised the manuscript accordingly.

Comments: Please elaborate the correlation of gender with EGFR vIII in your study.

Response: The study presented here does not the gender of patients. The samples were analyzed irrespective of the sex of the patient.

Comments: Discuss about the effect of age on the neurological deficit factor of meningioma.

Response: We did not consider the age of the patient. The inclusion criteria for sample collection simply include the meningioma patients with age above 18 years old. Below this age no samples were selected.

Comments: In the section material and methods, RT- PCR parameters used should be added.

Response: Thank you for valuable suggestion, sentences has been changed according to suggestion of reviewer and details have been added in revised MS.

Comments: As mentioned in the text, the tissue samples were stored in -80 degree Celsius. Can you elaborate the extent of degradation in the samples?

Response: After resection of the tissue, they were stored in -80 degree refrigerator. There is a minimal or no degradation in the sample at this temperature. All the enzymes and metabolic processes occurring in the tissue which leads to its decaying halts at this temperature. Further, tissues were kept in ice when they were taken out for various studies.

Comments: I would suggest the addition of protocol followed for quantitative PCR.

Response: Thank you for valuable suggestion, sentences has been changed according to suggestion of reviewer and details have been added in revised MS

Comments: Discuss about the duration of exposure with antibodies in western blotting.

Response: Thank you for valuable suggestion, sentences has been changed according to suggestion of reviewer and details discussion has added in revised MS.

Comments: Under the section results, line 351-352, pg. no. 20 has some grammatical error.

Response: The error has been corrected in the revised manuscript.

REVIEWER 3

Author reported potentialities of the variant in number of tumors but cannot validate the results by conventional methods and further advanced techniques could be helpful in this regard. Moreover, it can also be said that EGFR vIII does not have any significant role in meningioma. This study need minor correction for before publication

Response: Authors thankful for appreciation of the work. All the issues related to the manuscript has been resolved and revised the manuscript accordingly.

Comments: In your study, emphasis is given on Ki-67 proliferation. Its significance in this study should be discussed thoroughly.

Response: Thank you for valuable suggestion, sentences has been changed according to suggestion of reviewer and details of Ki-67 proliferation discussion has added in revised MS.

Comments: Authors should provide their perspective for non-significant results by different techniques used.

Response: The study presented here, revealed that EGFR vIII expression diminishes as the disease upgrades. This finding came into account through immunohistochemistry analysis. Further, techniques viz. RT PCR, western blotting etc. failed to prove the similar fact. The reason behind this could be the lowered expression of the EGFR vIII thus; it could not be detected by these techniques. The results might appear in the tissue sections but not in the processed forms.

Comments: Case recurring meningiomas should be discussed by the authors.

Response: The study does not involve the recurring meningioma.

Comments: In the section material and methods, provide the concentration of formalin used for fixation of tissues.

Response: Thank you for valuable suggestion, sentences has been changed according to suggestion of reviewer and details of concentration of formalin used for fixation of tissues added in main text.

Comments: Page 23, line 414, ‘targeting’ should be written as ‘targeted’.

Response: The error has been corrected in revised manuscript.

Comments: Under the section discussion, cross-reactivity of antibodies should be discussed briefly.

Response: The cross reactivity faced during the formation of antibodies in other studies have already been discussed in the manuscript.

Comments: Discuss the future prospects of this study.

Response: Thank you for valuable suggestion, sentences has been changed according to suggestion of reviewer and details discussion in revised MS. Present study deals with the problems faced in treating meningioma and expression of EGFR vIII in the same. As the disease progress, this EGFR mutant can prove to be a target for treatment or diagnosis of meningioma in future. EGFR vIII shows antagonistic behavior as the disease upgrades. Additionally, research can be done to use this variant in different aspects.

Attachment

Submitted filename: Response of reviewers comments.doc

Decision Letter 1

Timir Tripathi

12 Jul 2021

Exploring the role of Epidermal Growth Factor Receptor Variant III in meningeal tumors

PONE-D-21-18174R1

Dear Dr. Yadav,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Timir Tripathi, Ph.D.

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

The reviewers have reviewed the revised manuscript. The authors managed to revise the manuscript as per suggestions and made appropriate changes. Also, they were able to reply to the queries adequately. 

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Authors have revised the manuscript adequately. The manuscript may be accepted for publication in its current form.

Reviewer #2: All the comments has been addressed properly in the revised manuscript. I recommend this manuscript for publication.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: Yes: Yogesh Kumar

Acceptance letter

Timir Tripathi

17 Sep 2021

PONE-D-21-18174R1

Exploring the role of Epidermal Growth Factor Receptor Variant III in meningeal tumors

Dear Dr. Yadav:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Timir Tripathi

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Raw images

    S1 Fig. EGFR vIII RT-PCR Result (A) Standardized PCR cycle (B) amplification plot showing β-actin (reference material) (C) CT value of assessed samples expressed the beta-actin (reference), result showed that the expression of EFGR vIII was not detected in grade I and grade II meningioma using qRT-PCR. S2 Fig. Screening and mapping of EGFR vIII deletions in MG (A) Design of the RTPCR primers specific for the EGFR vIII mutant. (B) Design of mapping PCR primers corresponding to the EGFR Viii (C) No DNA sequence results seen. S3 Fig. Western blotting result by Anti-EGFR vIII antibody not detected any band of EGFR vIII in meningioma (Grade I & II)

    (PDF)

    Attachment

    Submitted filename: Response of reviewers comments.doc

    Data Availability Statement

    All relevant data are within the manuscript and its Supporting information files.


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