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. 2022 Mar 23;17(3):e0265687. doi: 10.1371/journal.pone.0265687

Detection of salivary citrullinated cytokeratin 13 in healthy individuals and patients with rheumatoid arthritis by proteomics analysis

Takuya Yasuda 1,*, Koichiro Tahara 1, Tetsuji Sawada 1
Editor: Oksana Lockridge2
PMCID: PMC8942274  PMID: 35320820

Abstract

The immune response to citrullinated peptides in the mucosa has been suggested to play an important role in the transition from pre-onset rheumatoid arthritis (RA) to clinically evident RA. Although there are reports indicating the presence of anti-citrullinated peptide antibodies in the saliva, few studies have reported citrullinated peptide detection in human saliva. This study aimed to identify citrullinated peptides in human saliva and discuss their clinical significance. Saliva samples were collected from 11 patients with RA and from 20 healthy individuals. Citrullinated peptides were detected using an anti-modified citrulline (AMC) antibody. Saliva from the healthy individuals was subjected to two-dimensional protein electrophoresis to isolate citrullinated peptides, which were analyzed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and mass spectrometry by peptide mass fingerprinting. The results were corroborated by immunoprecipitation (IP)-western blotting. The signal intensities of the bands precipitated with anti-cytokeratin 13 (CK13) and AMC antibodies were quantified. The signal intensity ratio of the band produced by the AMC antibody was divided by that of the band produced by the anti-CK13 antibody to calculate the citrullinated CK13 (Cit-CK13) ratio. A citrullinated peptide band corresponding to a molecular weight of approximately 50 kDa was detected in the saliva of healthy individuals, and identified as CK13 via mass spectrometry and IP-western blotting. No significant difference was observed between the salivary Cit-CK13 ratios of patients with RA and healthy participants (p = 0.605). This is the first study to show that Cit-CK13 is present in human saliva, and that there is no significant difference between the Cit-CK13 ratios of patients with RA and healthy individuals, suggesting that salivary Cit-CK13 content and RA development may not be associated. The physiological and pathological roles of Cit-CK13 in the oral cavity, and its responsiveness to mucosal immunity, remain unknown and will be the subject of further investigation.

Introduction

Rheumatoid arthritis (RA) is an autoimmune disease, in which the synovium is the primary site of the disease. Citrullinated peptides are thought to be involved in the pathogenesis of RA [1]. Fibrin (fibrinogen) [2, 3], vimentin [4], fibronectin [5], and α-enolase [6] have been reported as citrullinated peptides present in the joint synovium and joint fluid of patients with RA. Recent studies have indicated that in the pre-onset period, immune responses to citrullinated peptides in mucosal membranes, such as those present in the lungs and intestinal tract, may play an important role in the transition from pre-onset RA to clinically evident RA [79]. As a citrullinated peptide present in normal mucosal tissues, citrullinated filaggrin is reportedly expressed in the mucosal epithelial cells of the skin, oral cavity, esophagus, and nasal cavity. Filaggrin undergoes citrullination by peptidylarginine deiminase (PAD) during epithelial cell differentiation and plays an important role in the physiological function of epithelial cells [10, 11].

Citrullinated peptides are produced by the post-translational modification of arginine residues in proteins to citrulline residues by the action of PAD in the presence of calcium ions. Human citrullinated enzymes have five isoforms: PAD1, PAD2, PAD3, PAD4 (identical to PAD5), and PAD6, with each isoform exhibiting a different tissue localization and substrate profile. PAD2 and PAD4 are primarily involved in the pathogenesis of RA and other immune diseases [12]. PAD2 is ubiquitously expressed in several tissues, including skeletal muscles and the spleen, brain, and secretory glands, whereas PAD4 is primarily expressed in neutrophils and monocytes [13]. Although microorganisms do not normally express PAD, Porphyromonas gingivalis (Pg), a pathogen of periodontal disease, has been reported to produce Porphyromonas PAD (PPAD) and citrullinated peptides in periodontal tissues [14].

Anti-citrullinated peptide antibodies (ACPAs) have been detected in the sera of patients with RA and are widely used for RA diagnosis because of their excellent sensitivity and specificity [15]. Although there have been several reports on ACPAs in the saliva [1620], there are limited reports on citrullinated peptides as autoantigens in saliva. This study aimed to identify previously unidentified citrullinated peptides in human saliva through a comprehensive investigation of human saliva, and to discuss their clinical significance.

Materials and methods

Samples

After screening based on a questionnaire developed by Sugihara et al. [21], saliva samples were collected from participants with no subjective symptoms of periodontal disease (11 patients with RA and 20 healthy participants). For saliva from healthy individuals, samples were used for experiments in the order of collection, and 10 subjects were used for experiments to detect citrullinated peptides in saliva by Western blot, and the other 10 subjects for semi-quantitative study of the citrullinated peptide identified in saliva by mass spectrometry. Written informed consent was obtained from all individuals for participation in the study. Serum was collected by centrifugation of whole blood at 3000 rpm for 10 min and stored in a -20°C freezer until subsequent experimentation. Saliva was collected after rinsing the mouth with water and stored in a freezer at -20°C until subsequent experimentation. This study was approved by the Medical Ethics Review Committee of Tokyo Medical University.

Detection of citrullinated peptides

The proteins in the samples were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), followed by western blotting and membrane chemical treatment. After chemical treatment, an anti-chemically modified citrulline (anti-modified citrulline, AMC) rabbit polyclonal immunoglobulin (Ig) G antibody (ROI004, SHIMA Laboratories) was used to detect citrullinated peptides. This AMC antibody is the gold standard reagent for the detection of citrullinated peptides and is a polyclonal antibody that specifically recognizes chemically modified peptidyl-citrulline residue [22]. The detection method is briefly shown below. To chemically modify the citrulline residues of citrullinated peptides transferred onto a polyvinylidene difluoride (PVDF) membrane, the membrane was chemically modified as per the manufacturer’s instructions (ROI004, SHIMA Laboratories) with the following solution: 0.0125% FeCl3, 2.3 M H2SO4, 1.5 M H3PO4, 0.25% diacetyl monoxime, 0.125% antipyrine, and 0.25% acetic acid at 37°C for overnight incubation [22]. The membrane was then washed once with deionized water, blocked overnight at 4°C with Block Ace (Dainippon Pharmaceutical)/Tris-buffered saline containing 0.05% Tween (TBST), and probed with the AMC antibody diluted 1,000-fold in 10% Block Ace/TBST for 3 h at room temperature. The membrane was then washed three times with TBST and probed with a horseradish peroxidase (HRPO)-conjugated anti-rabbit IgG antibody diluted 20,000-fold in 10% Block Ace/TBST for 90 min at room temperature. After washing three times with TBST, the membrane was visualized by chemiluminescence using the ECL Prime western blotting Detection Reagent (RPN2232, Amersham). The chemiluminescence signals of the bands were detected using ChemiDoc XRSPlus (1708265, Bio-Rad). To exclude the possibility of cross-reactivity of secondary antibodies (HRPO-conjugated goat anti-rabbit IgG antibody) with IgG included in human saliva, WB was performed simultaneously under the above conditions with and without primary antibody.

Thrombomodulin (873339, Asahi Kasei Pharma) citrullinated in vitro by PAD from rabbit skeletal muscle (P1584, Sigma-Aldrich) in a reaction buffer containing 100 mM Tris (pH 7.6), 100 mM calcium chloride, and 5 mM dithiothreitol was used as a positive control for the detection of citrullinated peptides.

Identification of citrullinated peptides in saliva samples

Using the ZOOM IPGRunner system (ThermoFisher Scientific), 15 μg of each saliva sample were applied to a carrier amphipathic electrolyte isoelectrophoresis gel and separated, and the second dimension was developed using SDS-PAGE. To isolate citrullinated peptides from saliva samples electrophoresed by two-dimensional electrophoresis, two identical two-dimensional electrophoresis gels were prepared. One gel was subjected to western blotting using the AMC antibody, and the other sheet was subjected to silver staining using Pierce Silver Stain for mass spectrometry (24600, Thermo Scientific) to detect total protein. These two gels were compared, and the part of the gel that matched the spot of citrullinated peptide in the first gel was excised, and digested with trypsin (Promega, Madison, WI) without alkylation. The sample solution was desalted using ZipTip (Millipore) and then ionized using α-cyano-4-hydroxycinnamic acid as a matrix [23], and subjected to matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS, Microflex LRF20 [Bruker Daltonics]). Mass spectrometry was performed using the peptide mass fingerprinting (PMF) method (Genomine).

Immunoprecipitation (IP)-western blotting

Citrullinated cytokeratin 13 (Cit-CK13) was immunoprecipitated from saliva samples. To capture the target antigen, Cit-CK13, the Dynabeads Protein G Immunoprecipitation kit (MAN0017348, Invitrogen) and anti-human CK13 polyclonal antibody (LS-C664954, LifeSpan BioSciences) were used. Briefly, to promote the binding between the magnetic beads and the anti-CK13 antibody, 200 μL of an antibody binding and washing buffer and 5 μL (10 μg) of an anti-CK13 polyclonal antibody were added to a tube containing 1.5 mg of magnetic beads and incubated for 10 min at room temperature under rotating conditions. The tube was placed on a magnet to remove the supernatant, following which 1000 μL of a vigorously vortexed saliva sample was added, and the mixture was reacted by rotation at room temperature for 10 min to ensure that the magnetic bead-anti-CK13 antibody complex bound to CK13. The samples were washed once with Ab binding and washing buffer and washed three times with a washing buffer. After removing the washing buffer, 20 μL of the elution buffer, 2.5 μL of NuPAGE LDS Sample buffer (NP0007, Thermo Fisher Scientific), 1 μL of 0.5 M dithiothreitol, and 6.5 μL of deionized water were added to the magnetic bead-antibody-antigen complex and heated at 70°C for 10 min. Following this, 12 μL of the supernatant was separated by SDS-PAGE and subjected to western blotting. Two membranes were prepared: one was chemically treated and immunostained with the AMC antibody, and the other was immunostained with the anti-CK13 antibody.

Immunostaining with the anti-CK13 antibody was performed by incubating with an anti-CK13 antibody diluted 1,000-fold in 10% Block Ace/TBST for 3 h at room temperature, washing three times with TBST, and incubating with the HRPO-conjugated EasyBlot anti-rabbit IgG antibody diluted 5,000-fold in 10% Block Ace/TBST (GTX 221666–01, GeneTex) for 90 min at room temperature. After washing three times with TBST, the membranes were visualized using chemiluminescence.

Quantification of Cit-CK13 in saliva

Semi-quantitative analysis was performed based on the signal intensity of the bands detected using western blotting with Chemidoc XRSPlus. Two gels were prepared by SDS-PAGE using 12 μL of saliva from patients with RA and healthy individuals per lane, and western blotting was performed. In this case, the same saliva specimen was electrophoresed as a standard sample for each immunostaining experiment. One blot was immunostained with the anti-CK13 antibody, and the other blot was chemically treated and immunostained with the AMC antibody. To exclude the possibility of cross-reactivity of secondary antibodies (HRPO-conjugated goat anti-rabbit IgG antibody) with IgG included in human saliva, WB was performed simultaneously under the conditions with and without primary antibody. Next, the bands of anti-CK13 and AMC antibodies detected using Chemidoc XRSPlus were designated by lines according to the manufacturer’s instructions, and the signal intensities of the bands in the designated areas were quantified. The signal intensity ratio was calculated by dividing the signal intensity of the anti-CK13 antibody band and the AMC antibody band of each sample by the signal intensity of the standard sample. The signal intensity ratio of the band and the AMC antibody was divided by the signal intensity ratio of the band and the anti-CK13 antibody to calculate the Cit-CK13 ratio.

Statistical analysis

Statistical analyses were performed using the SPSS software (IBM, version 28). Median comparisons were performed using the Mann–Whitney test, with the Shapiro–Wilk test for normality. The results of the two-tailed test with p<0.05 were considered statistically significant.

Results

Detection of citrullinated peptides in saliva

The participants had a median age of 32.0 years (95% confidence interval [CI]: 28.1–39.4; 10 males). S1A Table shows the age and smoking history of the 10 participants. Western blotting revealed the presence of a band of citrullinated peptide of approximately 50 kDa in all samples. Considering the possibility that the secondary antibodies reacted with IgGs in human saliva, we set up a lane in which only HRPO-conjugated EasyBlot goat anti-rabbit IgG antibody was reacted with healthy human saliva without using primary antibodies, but no bands were detected. Fig 1 shows the results of western blotting for the representative cases.

Fig 1. Citrullinated peptides in the saliva of healthy participants.

Fig 1

Twelve microliters of saliva per lane were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The membrane was chemically treated and immunostained using an anti-modified citrulline antibody as the primary antibody and horseradish peroxidase-labeled goat anti-rabbit IgG antibody as the secondary antibody. Lanes 1–10:healthy human saliva.

Identification of candidate citrullinated peptide in saliva

Two-dimensional electrophoresis and silver staining of saliva samples from healthy participants at 200 μg per lane revealed the presence of a large number of peptides (Fig 2A). The spot corresponding to the positive spot stained with the AMC antibody (Fig 2B arrow) was excised, digested in gel with trypsin, and subjected to mass spectrometry using MALDI-TOF MS/PMF. The excised protein spot was identified as cytokeratin 13 (accession number: P13646). S2 Table shows the amino acid sequence of cytokeratin 13 and the amino acid sequence identified by MALD-TOF MS/PMF analysis (underlined).

Fig 2. Two-dimensional electrophoresis of citrullinated peptides in the saliva of healthy participants.

Fig 2

Saliva samples (200 μg per lane) were used. A: silver stain. B: the membranes were chemically treated and immunostained using an anti-modified citrulline antibody as the primary antibody and horseradish peroxidase-labeled goat anti-rabbit IgG antibody as the secondary antibody. Arrows: the peptide was excised and subjected to matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis.

Salivary Cit-CK13 identified by IP-western blotting

To show that salivary CK13 was citrullinated, saliva samples from the same participants (samples used for mass spectrometry) were immunoprecipitated with an anti-CK13 antibody and then immunostained with an anti-CK13 antibody (Fig 3A) and AMC antibody (Fig 3B). As shown in Fig 3, proteins of approximately 50 kDa immunoprecipitated by the anti-CK13 antibody from saliva reacted with the anti-CK13 and AMC antibodies, which confirmed that the citrullinated peptide present in saliva was Cit-CK13.

Fig 3. Immunoprecipitation (IP)-western blotting (WB) of saliva samples from healthy participants.

Fig 3

A. representative IP-western blot is shown. IP: anti-cytokeratin (CK) 13 antibody; WB: anti-cytokeratin (CK) 13 antibody; B. anti-modified citrulline (AMC) antibody after chemical treatment.

Quantification of Cit-CK13 in saliva

Representative western blotting images of salivary CK13 and Cit-CK13 in 11 patients with RA (age [years]: median 65.0, 95% confidence interval: 56.9–73.9; two males, nine females) and ten healthy individuals (age [years]: median 30.5, 95% confidence interval: 29.4–31.2; four males, six females) are shown in Figs 4 and 5. S1B and S1C Table shows the raw data including their smoking history. As shown in Fig 4, the western blotting of saliva samples from patients with RA (lanes 1–5) and healthy individuals (lanes 6–11) using the anti-CK13 antibody as the primary antibody led to the formation of a band of approximately 50 kDa in all lanes. A band was detected in the presence of the primary antibody (Fig 4A), but not in the absence of the primary antibody (Fig 4B). Therefore, it is very unlikely that the secondary antibody binds to the saliva sample and generates a band in this WB. As shown in Fig 5, the western blotting of saliva samples from patients with RA (lanes 1–5) and healthy individuals (lanes 6–11) using the AMC antibody as the primary antibody led to the detection of a citrullinated peptide of approximately 50 kDa in all lanes. A band was detected in the presence of the primary antibody (Fig 5A), but not in the absence of the primary antibody (Fig 5B). Therefore, it is very unlikely that the secondary antibody binds to the saliva sample and generates a band in this WB.

Fig 4. Cytokeratin (CK) 13 in the saliva of patients with rheumatoid arthritis (RA) and healthy participants.

Fig 4

Twelve microliters of saliva per lane were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis. A: Immunostaining was performed using an anti-CK13 antibody as the primary antibody and horseradish peroxidase-conjugated goat anti-rabbit IgG antibody as the secondary antibody. Lane P: positive control (recombinant CK13), Lanes 1–5: saliva from patients with RA; Lanes 6–11: saliva from healthy participants. B: Immunostaining was performed using only HRPO-conjugated goat anti-rabbit IgG antibody without primary antibody. Lane 1: Saliva from a healthy individual.

Fig 5. Citrullinated peptides in the saliva of patients with rheumatoid arthritis (RA) and healthy participants.

Fig 5

Twelve microliters of saliva per lane were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis. A: Immunostaining was performed using an anti-modified citrulline antibody as the primary antibody and a horseradish peroxidase-labeled goat anti-rabbit IgG antibody as the secondary antibody after the chemical treatment of the membrane. Lane P: positive control (citrullinated thrombomodulin); Lanes 1–5: saliva from patients with RA; Lanes 6–11: saliva from healthy participants. B: Immunostaining was performed using only HRPO-conjugated goat anti-rabbit IgG antibody without primary antibody. Lane 1: Saliva from a healthy individual.

For the western blots of CK13 and Cit-CK13, the chemiluminescence signals of the bands were measured, and the salivary Cit-CK13 ratio was calculated quantitatively. As shown in Fig 6, there was no statistically significant difference between the salivary Cit-CK13 ratios of patients with RA (n = 11) and healthy individuals (n = 10; p = 0.605).

Fig 6. Distribution of citrullinated cytokeratin 13 (Cit-CK13) ratio in the saliva of patients with rheumatoid arthritis (RA) and healthy participants.

Fig 6

The signal intensities of bands corresponding to cytokeratin 13 (CK13) and Cit-CK13 in saliva samples were measured. The same saliva sample was used as a standard sample for each immunostaining experiment, and the signal intensity ratio was calculated by dividing the signal intensities of the CK13 and Cit-CK13 bands of each saliva sample by the signal intensity of the standard sample. The Cit-CK13 ratio was calculated by dividing the signal intensity ratio of the Cit-CK13 band by that of the CK13 band.

Discussion

We detected citrullinated peptides in saliva samples from healthy individuals using western blotting. There have been no previous reports of CK13 detection in saliva. To our knowledge, this is the first study to identify Cit-CK13 as a citrullinated peptide in saliva.

With respect to the presence of citrullinated peptides in human saliva, Tar et al. developed an assay system to immobilize saliva samples on membranes and perform the semi-quantification of total citrullinated peptides using AMC antibodies, and reported that the quantities of total citrullinated peptides in saliva from patients with RA and healthy controls were comparable [24]. Because their assay system was based on a dot-blot method, the details of salivary citrullinated peptides remained unknown. In contrast, we performed a comprehensive analysis of citrullinated peptides in saliva using two-dimensional electrophoresis. Although several peptides were detected in the saliva samples by silver staining, the number of citrullinated peptides detected using AMC antibodies was unexpectedly small, and Cit-CK13 was the major salivary citrullinated peptide. Since the dot blot method developed by Tar et al. could detect citrullinated peptides present at levels below the detection sensitivity of the western blotting method used by us, the influence of the minor groups of citrullinated peptides cannot be denied. However, we found no significant difference between the levels of Cit-CK13, a major citrullinated peptide that we identified in the saliva samples, in patients with RA and healthy controls Therefore, it is highly probable that the human salivary citrullinated peptide detected by Tar et al. was Cit-CK13, although we did not perform the dot blot analysis ourselves.

We detected Cit-CK13 as a citrullinated peptide in the saliva of patients with RA and healthy individuals that was electrophoresed approximately up to 50 kDa. Conversely, Sakaguchi et al. conducted an analysis using a mouse type II collagen-induced arthritis (CIA) model to clarify the relationship between periodontal disease and arthritis and showed that Pg administration in the oral cavity of mice with CIA worsened the clinical parameters of arthritis and histological findings such as inflammatory cell infiltration and bone joint destruction [19]. Interestingly, they also analyzed citrullinated autoantigens and reported the detection of 55 kDa citrullinated peptides in the serum, saliva, and arthritis-affected sites in the CIA group, in the presence as well as in the absence of oral Pg administration. In contrast, no citrullinated peptide was detected in the saliva of healthy mice that received Pg orally. Therefore, the 55 kDa citrullinated peptide is an interesting molecule in that it is not citrullinated by PPAD, but is a salivary citrullinated peptide detected with the progression of arthritis. The authors did not report the identity of the 55 kDa peptide. Comparable to the molecular weight of Cit-CK13, which we identified, the molecular weight of both proteins was approximately 50 kDa, but the expression patterns were different in the presence and absence of arthritis, suggesting that they are likely to be different proteins. However, we cannot deny the possibility that the physiological distribution of Cit-CK13 differs between mice and humans owing to differences between the species. Additionally, it is not possible to conclude that the proteins differed only in their expression patterns. Findings from the time-of-flight mass spectrometry analysis of the 50 kDa protein in the saliva of mice with CIA are necessary to obtain conclusive evidence on this topic.

The site of CK13 citrullination remains unknown. The citrullination of salivary peptides could occur via the leakage of PAD from cells, or via the secretion or leakage of citrullinated peptides into the saliva within salivary gland cells. We searched the Genotype-Tissue Expression (GTEx) database for PAD expression in salivary glands [25]. While the parotid and submandibular glands were not included in this database entry, minor salivary glands were included. According to the GTEx search results, all PADs are expressed in human minor salivary glands. The average calcium concentration in human saliva is 5.8 mg/dL (1.45 mM) [26], which is suitable for maintaining the activity of PAD that is produced in the salivary gland cells and leaks into the saliva, which is sufficient for supporting the enzymatic activity of PAD [27]. Conversely, the cytoplasmic calcium concentration is approximately 100 nM [28], and the intracellular calcium concentration may increase via parasympathetic stimulation [29]. Histones and other proteins have been reported to be citrullinated intracellularly [30, 31]. And it is possible that PADs expressed in salivary glands intracellularly citrullinate CK13, resulting in the secretion of Cit-CK13 into saliva.

With respect to the role of citrullination in the oral mucosa, Arita et al. reported that PAD contributes to the integrity of the stratum corneum of the oral mucosa by citrullinating filaggrin and profilaggrin in the rat palate [32]. In addition to filaggrin, other citrullinated peptides with physiological roles include the glial cell fibrillary acidic protein [33], myelin basic protein [34], and histones [35]. For example, physiologically, citrullinated vimentin causes intermediate filament proteins to lose their ability to polymerize and form filaments [36], and citrullinated histones are involved in the regulation of gene expression and neutrophil extracellular trap formation. The physiological role of oral Cit-CK13 remains unknown, but similar to citrullinated filaggrin, it may play an important role in maintaining the structure and function of the oral mucosa; further investigation is needed on this topic.

A limitation of the present study is that the diagnosis of periodontal disease was not confirmed by dentists and oral surgeons. Screening for periodontal disease is generally performed by measuring the depth of the periodontal pockets, and the diagnosis of periodontal disease is confirmed when the depth is 4 mm or more [37]. In contrast to this, Sugihara et al. examined the usefulness of questionnaire-based screening in 990 Japanese individuals and reported that it was possible to efficiently screen patients with periodontal disease using a symptom-based screening questionnaire [21]. All participants in this study showed negative screening results, as assessed by the authors, and showed no subjective symptoms of periodontal disease. Furthermore, in Japan, in the age group corresponding to the age group of the healthy individuals included in this study (median age: 31.0 years), only 32.4% individuals had periodontal pockets with depths of 4 mm or more [38]. Our identification of Cit-CK13 is unlikely to be related to periodontal disease, since it was detected in all healthy individuals. Another limitation of the study is that it only included RA as a disease control and did not include other autoimmune diseases, including Sjogren’s syndrome, or neoplastic diseases such as salivary gland tumors. Citrullination has been reported to be associated not only with RA but also with the pathogenesis of malignancy [39]. Therefore, new findings may be obtained by targeting other oral diseases, including neoplastic diseases, which can be considered a subject for future research.

Although the IgG class ACPA (IgG-ACPA) content is measured in the routine diagnosis of RA, reportedly, there are IgM, and IgA classes of ACPA that are highly specific for RA as well as IgG-ACPA [40, 41]. IgG-ACPA binds to citrullinated peptides to form immune complexes and is considered to be involved in the induction and prolongation of rheumatoid synovitis [42]. IgA is an Ig that plays an important role in biological defense in mucosal tissues. IgA class ACPA (IgA-ACPA), similar to IgG-ACPA, was detected in the blood before the onset of RA [8]. Furthermore, IgA-ACPA is associated with high disease activity [18] and has been reported to be more useful than IgG-ACPA as a long-term prognostic factor for joint degeneration in early RA [43]. Therefore, IgA-ACPA may also play a facilitative role in RA pathogenesis. However, it was shown that IgA-ACPA may play a protective role in idiopathic pulmonary fibrosis (IPF) [44]. In vitro and in vivo experiments have shown that citrullinated vimentin promotes fibrosis in IPF [45]. Interestingly, Matson et al. recently reported that ACPA was detected in bronchoalveolar lavage fluid in approximately 20% of patients with IPF, and the prognosis of patients with IPF who tested positive for IgA-ACPA was significantly better than that of patients with IPF who tested negative for ACPA. This suggests that IgA-ACPA may exert a protective effect in the fibrotic process in IPF [44]. IgA-ACPA has been reported to be present not only in blood but also in saliva [18]. The physiological and pathological roles of Cit-CK13 in the oral cavity and its reactivity with IgA-ACPA are unknown and may be investigated in future studies.

Conclusion

Herein, we demonstrated for the first time the presence of Cit-CK13 in human saliva through a comprehensive assay for salivary citrullinated peptides. We measured the ratio of oral CK13 to Cit-CK13, considering that a difference in the ratio between the Cit-CK13 levels of patients with RA and healthy participants would provide insight into the pathogenesis of RA and the mechanism underlying ACPA production in the pre-RA stage. Although the Cit-CK13 ratio is assumed to correspond to the ratio of salivary Cit-CK13, the present analysis of the Cit-CK13 ratio showed no significant difference between the contents in patients with RA and healthy participants, suggesting that CK13 citrullination does not affect RA development. It remains to be confirmed in future studies whether Cit-CK13 influences the structure and function of the oral mucosa in the oral cavity.

Supporting information

S1 Table. Characteristics of healthy subjects (A, B) and rheumatoid arthritis (RA) patients (C) whose saliva were collected.

(DOCX)

S2 Table. Amino acid sequences of cytokeratin13 peptide identified by matrix 2 assisted laser desorption/ionization time of flight (MALDI-TOF) mass spectrometry.

(DOCX)

S1 Raw images

(PDF)

Data Availability

All relevant data are within the manuscript files.

Funding Statement

The authors received no specific funding for this work.

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Decision Letter 0

Oksana Lockridge

14 Jan 2022

PONE-D-21-37361Detection of salivary citrullinated cytokeratin 13 in healthy individuals and patients with rheumatoid arthritis by proteomics analysisPLOS ONE

Dear Dr. Takuya Yasuda,

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Reviewer #1: Summary: Citrullinated proteins in the joint synovium and joint fluid are diagnostic for rheumatoid arthritis. The present report tested the possibility that citrullinated proteins in human saliva could be used for diagnosis of rheumatoid arthritis. The first goal was to determine if saliva contained citrullinated proteins. Western blotting showed that human saliva contains citrullinated protein with a molecular weight of about 50 kDa. The citrullinated protein was identified as cytokeratin 13. The procedure for identifying the citrullinated protein included isolation by 2D gel electrophoresis, trypsin digestion, MALDI-TOF mass spectrometry and assignment of tryptic peptides to a protein. Comparison of band intensities on Western blots for citrullinated cytokeratin 13 in the saliva of healthy persons and rheumatoid arthritis patients showed no statistical differences. It was concluded that salivary citrullinated cytokeratin 13 levels are not associated with rheumatoid arthritis.

1. Page 4 line 92. Please give a brief description of the chemical treatment and why it is necessary to perform the chemical treatment on the PVDF membrane. Perhaps the target protein binds to PVDF membrane only if the membrane is chemically treated. Perhaps the antibody binds to citrullinated protein only if the membrane is chemically treated. It is not clear whether the chemical treatment affects the PVDF membrane or proteins on the membrane.

2. Page 7 line 152. It seems the chemical treatment was performed on the blot after protein had been transferred from the gel to the PVDF membrane. Does chemical treatment convert arginine to citrulline?

3. Page 4 line 92. Please name the manufacturer whose instructions you followed for chemically treating the PVDF membrane.

4. Page 5 line 117. Please include the name of the manufacturer and the model of the MALDI-TOF mass spectrometer.

5. Page 5 line 118. Peptide mass fingerprinting requires the protein to be digested with trypsin. Please describe how the sample was prepared for MALDI-TOF mass spectrometry. Was the protein reduced and alkylated? Were the peptides desalted before application to the target plate? What matrix was applied to the sample to make it ionize in the mass spectrometer?

6. page 7 lines 151-153. Typing error “one gel was immunostained with the anti-CK13 antibody, and the other gel was chemically treated and immunostained with the AMC antibody.” The typing error is the word “gel”. The word gel should be blot.

7. Page 8 line 189. The UniProt accession number for human cytokeratin 13 protein is P13646. The K1C13 name is the name of the gene.

8. Page 9 line 207. Typing error FigIP should be IP

9. Please provide the amino acid sequences of cytokeratin 13 peptides identified by MALDI-TOF mass spectrometry.

Reviewer #2: I am happy to take an opportunity to review the manuscript entitled “Detection of salivary citrullinated cytokeratin 13 in healthy individuals and patients with rheumatoid arthritis by proteomics analysis”. The study focused on the citrullinated protein in human saliva and compared that in healthy subjects with patients with rheumatoid arthritis. This topic is important in exploring the etiology of rheumatoid arthritis. This manuscript is a novel work in that it shows citrullinated CK13 is identified in saliva. However, some points as indicated below need to be addressed by authors to improve the quality of the article.

Specific comments are listed below.

1. The authors should explain why CK13 was focused on as a protein in saliva.

2. It is unclear how serum collected from RA and healthy individuals were used in this study.

3. The patients’ characteristics, including smoking history and serological profile of healthy subjects and RA patients, should be appropriately described.

4. The authors should explain how 10 patients to be compared with RA patients were selected from 21 healthy controls.

5. “p = 0.705” in the 242th line should be corrected to “p = 0.605” as shown in Fig 6.

**********

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Reviewer #2: No

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PLoS One. 2022 Mar 23;17(3):e0265687. doi: 10.1371/journal.pone.0265687.r002

Author response to Decision Letter 0


28 Feb 2022

1-4 Reviewer Comments to the Author

We appreciate the reviewers' assessment of our manuscript.

To the Editor, Reviewer 1, and Reviewer 2

Although this is not a response to the points raised, an error was found in the proofreading process. Therefore, we would like to correct the following one point.

Page 8 line 190.

(Before correction): we set up a lane in which only HRPO-conjugated EasyBlot goat anti-rabbit IgG antibody was reacted with healthy human saliva without using primary antibodies

(After correction): "EasyBlot" was deleted.

(Reason) It was a simple mistake. The EasyBlot secondary antibody was used in the experiment "Immunoprecipitation-Western blotting". However, EasyBlot was not used for detection of citrullinated peptides in saliva.

In addition, we have made the following corrections to the two "data not shown" statements.

(1) Page 11 lines 253-255

We have removed the "data not shown" and instead added Figure 4B to Figure 4. The revised parts are shown in red.

Fig 4. Cytokeratin (CK) 13 in the saliva of patients with rheumatoid arthritis (RA) and healthy participants. Twelve microliters of saliva per lane were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis. A: Immunostaining was performed using an anti-CK13 antibody as the primary antibody and horseradish peroxidase-conjugated goat anti-rabbit IgG antibody as the secondary antibody. Lane P: positive control (recombinant CK13), Lanes 1–5: saliva from patients with RA; Lanes 6–11: saliva from healthy participants. B: Immunostaining was performed using only HRPO-conjugated goat anti-rabbit IgG antibody without primary antibody. Lane 1: Saliva from a healthy individual.

(2) Pages 11-12 lines 263-265

We have removed the "data not shown" and instead added Figure 5B to Figure 5. The revised parts are shown in red.

Fig 5. Citrullinated peptides in the saliva of patients with rheumatoid arthritis (RA) and healthy participants. Twelve microliters of saliva per lane were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis. A: Immunostaining was performed using an anti-modified citrulline antibody as the primary antibody and a horseradish peroxidase-labeled goat anti-rabbit IgG antibody as the secondary antibody after the chemical treatment of the membrane. Lane P: positive control (citrullinated thrombomodulin); Lanes 1–5: saliva from patients with RA; Lanes 6–11: saliva from healthy participants. B: Immunostaining was performed using only HRPO-conjugated goat anti-rabbit IgG antibody without primary antibody. Lane 1: Saliva from a healthy individual.

To Reviewer 1

We appreciate the reviewer's valuable and insightful comments. The added/revised sentences are shown in red in the manuscript.

1. Page 4 line 92. Please give a brief description of the chemical treatment and why it is necessary to perform the chemical treatment on the PVDF membrane. Perhaps the target protein binds to PVDF membrane only if the membrane is chemically treated. Perhaps the antibody binds to citrullinated protein only if the membrane is chemically treated. It is not clear whether the chemical treatment affects the PVDF membrane or proteins on the membrane.

Thank you for your valuable comments. As you pointed out, we also think that the explanation of the identification method of citrullinated peptides was insufficient. In the study of citrullinated protein peptides, detection by AMC (anti-modified citrulline) antibody has been used as the gold standard for the identification of citrullinated peptides since Senshu's report in 1992 (Senshu T et al. Anal Biochem 203, 94, 1992). In this detection method, the citrulline residue of the citrullinated peptide blotted onto PVDF is chemically treated and detected by anti-AMC antibody, instead of chemically treating PVDF to bind the citrullinated peptide. The chemical modification of the citrulline residue is based on a chemical reaction used in the colorimetric quantification of citrulline as a free amino acid.

To describe the specific method and reason for the chemical modification method used to identify citrullinated peptides, the text in Pages 4-5, lines 93-100 has been revised as follows.

(Before correction): This antibody is absolutely specific for citrullinated peptides. In brief, the blotted polyvinylidene difluoride membrane was chemically modified according to the manufacturer’s instructions.

(After correction): This AMC antibody is the gold standard reagent for the detection of citrullinated peptides and is a polyclonal antibody that specifically recognizes chemically modified peptidyl-citrulline residue [22]. The detection method is briefly shown below. To chemically modify the citrulline residues of citrullinated peptides transferred onto a polyvinylidene difluoride (PVDF) membrane, the membrane was chemically modified as per the manufacturer's instructions (ROI004, SHIMA Laboratories) with the following solution: 0.0125% FeCl3, 2.3 M H2SO4, 1.5 M H3PO4, 0.25% diacetyl monoxime, 0.125% antipyrine, and 0.25% acetic acid at 37°C for overnight incubation [22].

2. Page 7 line 152. It seems the chemical treatment was performed on the blot after the protein had been transferred from the gel to the PVDF membrane. Does chemical treatment convert arginine to citrulline?

As you mentioned, we performed a chemical treatment on the PVDF membrane to which the peptide was transferred from the gel. This chemical reaction is against the citrulline residue in the peptide on the PVDF membrane and does not convert arginine to citrulline.

3. Page 4 line 92. Please name the manufacturer whose instructions you followed for chemically treating the PVDF membrane.

Following your instruction, I added the company name (SHIMA Laboratories) in red on Page 5 line 98.

4. Page 5 line 117. Please include the name of the manufacturer and the model of the MALDI-TOF mass spectrometer.

As instructed, the name of the manufacturer (Bruker Daltonics) and the model name of the MALDI-TOF mass spectrometer (Microflex LRF20) were added in red in Page 6 lines 130-131.

5. Page 5 line 118. Peptide mass fingerprinting requires the protein to be digested with trypsin. Please describe how the sample was prepared for MALDI-TOF mass spectrometry. Was the protein reduced and alkylated? Were the peptides desalted before application to the target plate? Please describe how the sample was prepared for MALDI-TOF mass spectrometry.

As per your instructions, we have inserted the following text in Page 6, lines 127-

129 regarding the treatment of samples prior to submission to mass spectrometry (trypsin digestion, with or without reduction/alkylation/desalting, and matrix for ionization).

and digested with trypsin (Promega, Madison, WI) without alkylation. The sample solution was desalted using ZipTip (Millipore) and then ionized using �-cyano-4-hydroxycinnamic acid as a matrix [23], and

6. page 7 lines 151-153. Typing error "one gel was immunostained with the anti-CK13 antibody, and the other gel was chemically treated and immunostained with the AMC antibody. The typing error is the word "gel". The word gel should be blot.

Thank you for pointing out the error. As you indicated, we have changed the word "gel" to "blot" for Page 7 lines 165-166.

(After correction) "One blot was immunostained with the anti-CK13 antibody, and the other blot was chemically treated and immunostained with the AMC antibody."

7. Page 8 line 189. the UniProt accession number for human cytokeratin 13 protein is P13646. the K1C13 name is the name of the gene.

Thank you for your suggestion. As you pointed out, the UniProt accession number for the human cytokeratin 13 protein was P13646. In Results, in Page 9 line 207 "K1C13_HUMAN" was deleted and "P13646" was added in red. 

8. Page 9 line 207. Typing error FigIP should be IP.

Thank you for pointing out the typographical error. In Results, Page 10 line 226 "FigIP" was corrected to "IP" in red.

9. Please provide the amino acid sequences of cytokeratin 13 peptides by MALDI-TOF mass spectrometry.

Following your instruction, the amino acid sequence of cytokeratin 13, including the amino acid sequence of cytokeratin 13 peptide identified by MALDI-TOF mass spectrometry (underlined), is shown in Supplementary table 2.

Supplementary table 2. Amino acid sequences of cytokeratin 13 peptide identified by matrix 2 assisted laser desorption/ionization time of flight (MALDI-TOF) mass spectrometry.

1 MSLRLQSSSA SYGGGFGGGS CQLGGGRGVS TCSTRFVSGG SAGGYGGGVS

51 CGFGGGAGSG FGGGYGGGLG GGYGGGLGGG FGGGFAGGFV DFGACDGGLL

101 TGNEKITMQN LNDRLASYLE KVRALEEANA DLEVKIRDWH LKQSPASPER

151 DYSPYYKTIE ELRDKILTAT IENNRVILEI DNARLAADDF RLKYENELAL

201 RQSVEADING LRRVLDELTL SKTDLEMQIE SLNEELAYMK KNHEEEMKEF

251 SNQVVGQVNV EMDATPGIDL TRVLAEMREQ YEAMAERNRR DAEEWFHTKS

301 AELNKEVSTN TAMIQTSKTE ITELRRTLQG LEIELQSQLS MKAGLENTVA

351 ETECRYALQL QQIQGLISSI EAQLSELRSE MECQNQEYKM LLDIKTRLEQ

401 EIATYRSLLE GQDAKMIGFP SSAGSVSPRS TSVTTTSSAS VTTTSNASGR

451 RTSDVRRP

Healthy human saliva was separated by two-dimensional electrophoresis, and the part of the gel that matched the spot of citrullinated peptide was cut and analyzed by MALDI-TOF mass spectrometer (Microflex LRF20 [Bruker Daltonics]) and mass spectrometry using peptide mass fingerprinting (Genomine). The underlined part is the amino acid sequence matched to the cytokeratin 13 peptide.

To Reviewer 2

We appreciate the reviewer's valuable and insightful comments. The added/revised sentences are shown in red in the manuscript.

1. The authors should explain why CK13 was focused on as a protein in saliva.

Thank you for pointing this out. We apologize for the confusing description. This study did not hypothesize that CK13 is a peptide in saliva, but was a comprehensive search for citrullinated peptides in saliva. We are discussing CK13 because our analysis showed that CK13 is present in saliva. To avoid misunderstanding, we added the following words (in red) to Page 3 lines 71-72.

“This study aimed to identify previously unidentified citrullinated peptides in human saliva through a comprehensive investigation of human saliva and to discuss their clinical significance.”

2. it is unclear how serum collected from RA and healthy individuals were used in this study.

Thank you for pointing this out. Serum was not used in this study, and it was a typographical error; we have removed "and serum" from Page 4 lines 76-77.

(Before correction): saliva and serum samples were collected from participants

(After correction): saliva samples were collected from participants

3. The patients' characteristics, including smoking history and serological profile of healthy subjects and RA patients, should be appropriately described.

Following your instructions, we made a table on the characteristics of the healthy subjects and patients with RA whose saliva were collected. We show this as Supplementary table 1. For healthy subjects, we did not present serological characteristics because they did not suffer from RA, and only smoking history was described. For patients with RA, serological profiles were described.

Supplementary table 1. Characteristics of healthy subjects (A, B) and rheumatoid arthritis (RA) patients (C) whose saliva were collected.

A

Healthy individual Age (years) Sex Smoking history

1 31 Male (-)

2 50 Male (+)

3 44 Male (-)

4 37 Male (-)

5 34 Male (-)

6 33 Male (-)

7 28 Male (-)

8 27 Male (-)

9 27 Male (-)

10 27 Male (-)

B

Healthy individual Age (years) Sex smoking history

1 31 Male (-)

2 29 Female (-)

3 29 Male (-)

4 30 Male (-)

5 32 Male (-)

6 32 Female (-)

7 31 Female (-)

8 29 Female (-)

9 31 Female (-)

10 29 Female (-)

C

RA

Age (years) Sex CRP (mg/dl) RF

(IU/ml) MMP-3

(ng/ml) Anti-CCP antibody (U/ml) Smoking history

1 85 Female 1.1 <3.0 385.8 15.6 (-)

2 65 Female 0.04 54 66.6 unknown (-)

3 66 Female 0.19 895.6 69.8 3.6 (+)

4 58 Female 0.13 28.3 99.1 72.7 (-)

5 64 Male 0.38 73.3 170.4 73.1 (+)

6 70 Female 0.06 72.8 30.9 290 (+)

7 88 Male 0.26 6.3 270.3 12.8 (+)

8 49 Female 1.79 173.6 297.6 243 (-)

9 69 Female 0.03 22.3 58.6 1280 (-)

10 55 Female 0.34 106.2 97.6 659 (+)

11 50 Female 0.02 42.3 40.4 52.9 (-)

 

A: Healthy individuals used for detection of citrullinated peptides in saliva; B: Healthy individuals used for semi-quantification of Citrullinated Cytokeratin13 (Cit-CK13) in saliva; C: RA patients used for semi-quantification of Cit-CK13 in saliva

Smoking history: including current smoking. CRP: C-reactive protein (normal range 0.3

mg/dL or less); RF: Rheumatoid Factor (normal range 15 IU/mL or less); MMP-3: Matrix

Metalloproteinase-3 (normal range: female 17.3-59.7 ng/mL, male 36.9-121 ng/mL)

4. the authors should explain how 10 patients to be compared with RA patients were selected from 21 healthy controls.

There was a counting error when we wrote the number of saliva samples collected. We collected saliva samples from 20 healthy subjects in total, 10 for the Western blot experiment to detect citrullinated peptide in saliva and 10 for the semi-quantitative study of cit-CK13 in saliva.

Page 1, line 21.

(Before correction): Saliva samples were collected from 11 patients with RA and 21 healthy individuals.

(After correction): Saliva samples were collected from 11 patients with RA and from 20 healthy individuals.

Page 4, lines 78-81.

(Inserted text): For saliva from healthy individuals, samples were used for experiments in the order of collection, and 10 subjects were used for experiments to detect citrullinated peptides in saliva by Western blot, and the other 10 subjects for semi-quantitative study of the citrullinated peptide identified in saliva by mass spectrometry.

(Before correction): Saliva and serum samples were collected from subjects with no subjective symptoms of periodontal disease (11 rheumatoid arthritis patients and 21 healthy individuals) after screening using the questionnaire of Sugihara et al [21].

(After correction): Saliva samples were collected from subjects with no subjective symptoms of periodontal disease (11 rheumatoid arthritis patients and 20 healthy individuals) after screening using the questionnaire of Sugihara et al [21].

Page 8, lines 186-188.

(Before correction): The participants had a median age of 31.0 years (95% confidence interval: 29.5–34.7; 15 males, six females).

(After correction): The participants had a median age of 32.0 years (95% confidence interval: 28.1–39.4; 10 males). Supplementary table 1A shows the age and smoking history of the 10 participants.

5. "p = 0.705" in the 242nd line should be corrected to "p = 0.605" as shown in Fig

Thank you for pointing out the error. We have corrected the description of Figure 5 in Page 12 line 270 as shown below.

"As shown in Fig 6, there was no statistically significant difference between the salivary Cit-CK13 ratios of patients with RA (n = 11) and healthy individuals (n = 10; p = 0.605)."

Attachment

Submitted filename: Response_to_Reviewers.docx

Decision Letter 1

Oksana Lockridge

7 Mar 2022

Detection of salivary citrullinated cytokeratin 13 in healthy individuals and patients with rheumatoid arthritis by proteomics analysis

PONE-D-21-37361R1

Dear Dr. Yasuda,

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Acceptance letter

Oksana Lockridge

11 Mar 2022

PONE-D-21-37361R1

Detection of salivary citrullinated cytokeratin 13 in healthy individuals and patients with rheumatoid arthritis by proteomics analysis

Dear Dr. Yasuda:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

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Kind regards,

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on behalf of

Dr. Oksana Lockridge

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Table. Characteristics of healthy subjects (A, B) and rheumatoid arthritis (RA) patients (C) whose saliva were collected.

    (DOCX)

    S2 Table. Amino acid sequences of cytokeratin13 peptide identified by matrix 2 assisted laser desorption/ionization time of flight (MALDI-TOF) mass spectrometry.

    (DOCX)

    S1 Raw images

    (PDF)

    Attachment

    Submitted filename: Response_to_Reviewers.docx

    Data Availability Statement

    All relevant data are within the manuscript files.


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