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. 2023 Jan 26;11:295. Originally published 2022 Mar 10. [Version 2] doi: 10.12688/f1000research.108970.2

DNA barcoding detects resurrected taxon Giuris laglaizei (Sauvage 1880) in Sulawesi, Indonesia: Bolano Sau Lake payangka phylogeny, phenotypic characters and implications for Giuris spp. conservation

Samliok Ndobe 1,a, Muhammad Saleh Nurdin 1, Nur Hasanah 1, Aswad Eka Putra 1, Kasim Mansyur 1, Mohamad Nasir 2, Mashening L Rabuna 2, Abigail Mary Moore 3
PMCID: PMC9936567  PMID: 36816806

Version Changes

Revised. Amendments from Version 1

This second version incorporates edits made in response to the input from two reviewers. These include: 1. The term polyphyletic is no longer used, accepting the reviewer comment that our data are not sufficient to do so; instead, we refer to or describe the deeply divided phylogenetic tree topology of the genus Giuris. 2. We replaced Gobioidei (including one mis-spelt occurrence) with Gobiiformes to comply with recent changes in taxonomic usage. 3. We accepted a reviewer suggestion regarding the way in which we refer to the NCBI Basic Local Alignment Search Tool routine used, and amended the methods section accordingly. 4. We clarified the further research recommended in the conclusion, as a response to reviewer input. 5. We deleted the estimated volume of Lake Bolano Sau, as this may not be very accurate. 6. We accepted the reviewer suggestion to use standard (rather than italic) font for local language common names of organisms. 7. We made spelling corrections and improvements in terms of English language usage, some on the advice of reviewers and some based on our own review of the text.

Abstract

Background: The freshwater ichthyofauna of Wallacea is diverse and understudied. A baseline survey of Bolano Sau Lake in Parigi Moutong District, Central Sulawesi Province, Indonesia in 2019 found an eleotrid goby (local name payangka) with characters conforming to the genus Giuris, long considered monophyletic as G. margaritacea/G. margaritaceus but recently found to comprise at least eight species. This study focused on the molecular (DNA barcoding) identification and phenotypic characters of the payangka.

Methods: Payangka samples were collected from August to December 2019 in collaboration with local fishermen, weighed and measured, and preserved in 75% ethanol. Length, weight, sex (n=111) and 17 morphometric characters/six meristic counts (n=42) were recorded. DNA barcoding was performed on a fin clipping preserved in 96% ethanol. Homologous nucleotide sequences were obtained from public (GenBank and BOLD) databases, analysis conducted in MEGA X, and phylogenetic trees edited in the Interactive Tree of Life (iToL).

Results: Within the deeply divided Giuris clade, the payangka sequence resolved into a sub-clade identified as Giuris laglaizei (Sauvage 1880), a recently resurrected taxon, based on a sequence provided by Philippe Keith. The length-weight relationship (L = 0.0087∙W3.162) indicated mildly allometric positive growth. Size distribution differed significantly between male and female fish with significantly larger mean size of males (13.56 cm) than females (11.62 cm). The meristic formula was: D VI-I,8 A I,8 P 13 V I,5 C15. Phylogenetic analysis indicated four Giuris species in wetlands around Tomini Bay and five in Sulawesi.

Conclusions: This first record of G. laglaizei in Indonesia advances knowledge of Wallacean and Indo-Pacific Gobiiformes biogeography and highlights the need for a revision of the conservation status of the taxa currently grouped under Giuris margaritacea/G. margaritaceus in the IUCN Red List and FishBase databases. The data will inform biodiversity and fisheries management at local and regional levels.

Keywords: Eleotridae, Giuris margaritacea, amphidromy, phylogeny, meristic, morphometric, Tomini Bay, Wallacea

Background

Indonesian freshwater ichthyofauna is highly diverse, comprising primary freshwater and diadromous fishes. 1 While the ichthyofauna of western Indonesia (Sundaland biogeographic province) is dominated by cyprinids (Cyprinidae), the gobies (Gobiiformes) predominate in the Wallacea biogeographic province. 1 , 2 The freshwater ichthyofauna of Sulawesi, the largest island in Wallacea, is characterised by endemic freshwater species flocks and diadromous (mostly amphidromous sensu 3 , 4 ) taxa with marine larval stages. 1 These include gobies (Gobiiformes) of the families Gobiidae and Eleotridae, the latter also known as sleepers or gudgeons. 1 , 5 9 Although the number of diadromous (mostly amphidromous) gobies reported from the lakes, rivers and coastal waters around Sulawesi is increasing, with several recently described species and range extensions, 10 18 the ichthyofauna of most Sulawesian waterbodies is still largely unstudied. 9

Typically multi-species shoals of amphidromous goby postlarvae, with local names including nike, penja and duwo, are heavily fished in coastal waters around Sulawesi as they migrate to freshwater habitats, both as the main fish catch and as bycatch in anguillid glass eel fisheries. 11 , 12 , 19 23 Goby postlarvae are also present and intensively fished in some inland waters, in particular Tondano Lake in North Sulawesi. 10 , 24 28 The adults of some diadromous gobies are also locally important as food fish, including gudgeons (Eleotridae) generally known as payangka or (more rarely) payangga. 10 , 29 , 30 Sulawesian payangka populations have been identified as northern mud gudgeon Ophiocara porocephala (Valenciennes 1837) 31 33 and snakehead gudgeon Giuris margaritacea (Valenciennes 1837). 25 , 26 , 34 36 Both taxa are thought to be amphidromous. 37

In recent decades the Indonesian Government has promoted so-called “re-stocking” of inland waterbodies. These programs almost always involve the release of non-native (alien) species, often with negative impacts on native aquatic species in Indonesia 38 , 39 including in Sulawesi. 40 43 Increasing concern for native aquatic species has prompted surveys of inland waterbodies in Sulawesi, including those with a history of such introductions.

Bolano Sau Lake is one of a series of three small lakes close to the Tomini Bay coast of the northern arm of Sulawesi, in Bolano Subdistrict, Parigi Moutong District, Central Sulawesi Province. A baseline survey of Bolano Sau Lake in 2019 found an ichthyofauna dominated by introduced (alien) fish species. 44 , 45 Three native species were caught during sampling, one of which was a gudgeon with the local name payangka, tentatively identified as Giuris margaritacea, 45 the current valid name of the snakehead gudgeon in FishBase, the Global Database of Fishes. According to Kottelat (2013) the genus name Giuris is masculine in gender, and therefore the correct nomenclature is Giuris margaritaceus, the current organism name in the NCBI GenBank and BOLD nucleotide sequence databases. 46

Within the order Gobiiformes, cryptic and morphologically similar species can complicate identification based on external morphology, 46 49 and there have been many taxonomic revisions, including within the family Eleotridae. There are at least 10 “non valid” synonyms of G. margaritacea (Valenciennes 1837) (originally Eleotris margaritacea Valenciennes 1837) listed in FishBase, including Ophieleotris aporos (originally Eleotris aporos Bleeker 1854) and junior synonyms under the genera Eleotris (n=7), Hypseleotris (n=1), and Ophieleotris (n=1). Ophieleotris aporos in particular is still commonly used, 14 , 30 , 50 52 and a recent checklist of fishes from two Sulawesian islands 13 lists G. margaritacea (from East and West Timor) and O. aporos (from lakes in North Sulawesi) as separate species, with the further addition of Ophieleotris aff. aporos (from Buton Island in Southeast Sulawesi). Recent research has demonstrated that G. margaritacea has been erroneously and confusingly applied to a taxonomic group comprising at least eight species. 15 , 53

Such taxonomic uncertainty seriously complicates accurate species determination and the search for valid information on aspects such as species distribution, biology, ecology and status. As pointed out by, 54 the ability to precisely identify the fish species in fisheries catches or waters is important for moving towards more sustainable exploitation of fish resources and better protection of fish diversity. An increasingly common molecular approach to species identification is DNA barcoding; this involves the sequencing of a fragment of DNA which is highly conserved within species but differs between species of the taxonomic group being studied. 55 For vertebrates, including fishes, a subset or fragment of the mitochondrial cytochrome oxidase I (COI) gene is the most commonly used barcoding region. 2 , 56 In addition to species identification, phenotypic traits are important for taxonomy and to support fisheries management. 54 , 57 , 58

From a biodiversity and responsible fisheries management point of view, it was considered important to determine the native species currently present in Bolano Sau Lake. This study combined molecular biology methods (DNA barcoding) to identify the payangka in Bolano Sau Lake with classic methods to describe phenotypic characters, in particular external morphology (morphometric and meristic characters) and growth pattern (length-weight relationship). The study will inform management of the payangka as well as contributing to knowledge of Giuris biogeography .

Methods

Ethical statement

This study complied with relevant ethical regulations in Indonesia and followed the ARRIVE guidelines. The use of the samples in this study did not require specific ethical approval for the following reasons:

  • 1.

    All fish specimens used were obtained under an ongoing collaboration between the Parigi Moutong District Marine and Fisheries Service (Dinas Kelautan dan Perikanan Kabupaten Parigi Moutong) and Universitas Tadulako following all applicable regulations.

  • 2.

    The fish were captured by local fishers operating legal fisheries using permitted artisanal fishing gears.

  • 3.

    All fish were euthanized following the standard guidelines in use for fish specimens at Universitas Tadulako. Based on standard internationally recognised protocols, 59 the procedures used were designed to minimise any suffering experienced by the specimens (through anaesthetising the fish before pithing), and were performed by experienced personnel.

  • 4.

    The IUCN Red List assessment lists Giuris margaritacea (the only listed Giuris taxon) in the Least Concern category (not considered at risk of extinction).

  • 5.

    There was no experimental component.

Study site

Bolano Sau is the largest of a three-lake complex in the coastal plain along the north coast of Tomini Bay in Parigi Moutong District, Central Sulawesi Province, Indonesia. Batudako Lake is further inland, and Laut Kecil Lake is closer to the coast. Bolano Sau Lake is situated just north of the equator in Bolano Barat Village, Bolano Subdistrict, between approximately 0° 27’ 12” to 0° 27’ 15” N and 120° 52’ 52” to 120° 53’ 49” E an elevation of 5 m above sea level with an area of around 76 Ha, an average depth of around 4.26 m and a maximum depth of less than 10 m ( Figure 1).

Figure 1. Bathymetric map of Bolano Sau Lake in Parigi Moutong District, Central Sulawesi, Indonesia.

Figure 1.

Fish specimens

Payangka specimens for morphometric and meristic analysis were collected from August to December 2019 in collaboration with local fishermen using a throw net with mesh size 3.5” (n=42). Field identification followed. 6 , 60 Specimens were humanely euthanized (anaesthesia with 70% ethanol followed by pithing) following. 59 Each fish was then weighed (electronic scales, precision 1 g), measured (Cadwell fish ruler, precision 0.5 mm), labelled and preserved in 70% alcohol.

DNA extraction and barcoding

Prior to preservation, a fin clipping was taken from the right-hand pectoral fin of a payangka specimen (female, total length (TL)=13.32 mm) and placed in a 1.5 mL Eppendorf tube filled with 96% absolute ethanol. The sample was dispatched to the BIONESIA laboratory in Denpasar for DNA barcoding. Genomic DNA was extracted from the sample using the Qiagen DNeasy Blood & Tissue Kit following manufacturer’s protocols. A fragment of mitochondrial DNA (mtDNA) from the cytochrome oxidase I (COI) gene was amplified through polymerase chain reaction (PCR) using Fish_F1 and Fish_R1 primers. 61 The PCR profile comprised initial denaturation at 94 °C for 3 min; 35 cycles of 94 °C for 30 s, 50 °C for 30 s, and 72 °C for 60 s; and final extension at 72 °C for 2 min. The PCR product was visualized via electrophoresis on 1% agarose gel stained with Nucleic Acid Gel Stain (GelRed ®). Sanger sequencing of the PCR product was performed by First Base (Singapore). The forward and reverse sequences were trimmed, aligned and combined in MEGA X 62 to produce a nucleotide sequence submitted to the NCBI GenBank repository as accession OM674613. 63 The nucleotide composition (adenine, thymine, guanine, cytosine bases) of the payangka mitochondrial cytochrome C oxidase subunit I (COI) gene sequence was determined in MEGA X. 62 The online National Center for Biotechnology Information (NCBI) standard nucleotide Basic Local Alignment Search Tool-nucleotide (BLAST ©) blastn routine and the Barcode of Life Database (BOLD) Identification routine were used to provide an initial identification.

Phylogenetic analysis

Homologous nucleotide sequences with at least 90% coverage were obtained from the NCBI blastn results (Gobiiformes in the 100 closest matches) and NCBI GenBank accession search using the terms Giuris margaritaceus, G. margaritacea, Ophieleotris aporos and Ophiocara porocephala, as well as from the BOLD Database using the keyword Giuris which yielded seven Barcode Index Numbers (BINs), with additional sequences obtained from the scientific literature (Table S1 – see Extended Data). The climbing perch Anabas testudineus was used as an outgroup: a sequence from Bolano Sau Lake, GenBank accession OM674614, 63 and GenBank accession MG407353. 64 All alignment, trimming and evolutionary analyses were conducted in MEGA X. 62 Evolutionary relationships were inferred and phylogenetic trees constructed using the Maximum Likelihood method and Kimura 2-parameter model 65 with default parameters, all codon positions, 100 × bootstrap test, and branch lengths representing the number of substitutions per site.

The first phylogenetic tree was constructed from an aligned dataset with 630 nucleotide positions containing 96 nucleotide sequences (GenBank accessions in Table S1). A second tree was constructed using all sequences in Table S1 with the genus level label Giuris (including BOLD records and non-deposited sequences) and other sequences nested within the Giuris clade in the first tree; there were 94 nucleotide sequences with 580 nucleotide positions in the aligned dataset. The payangka sequence was included in both analyses. The phylogenetic trees were exported from Mega X as Newick tree files and edited in the on-line interactive Tree of Life (iToL). 66 , 67 Pairwise evolutionary distances (number of base substitutions per site) within the Giuris and an outgroup ( Mogurnda adspersa) from the nearest Eleotridae clade were estimated using the Compute Pairwise Distances routine in Mega X, using the Maximum Composite Likelihood model. 68

Phenotypic characteristics of the Bolano Sau Lake payangka

Morphometric and meristic characters ( Table 1) of the Bolano Sau Lake payangka (n=42) were measured or counted in the Aquatic Biology Laboratory, Universitas Tadulako, Palu. 69 Morphometric characters ( Figure 2) were measured using electronic callipers with a precision of 0.01 mm. Length, weight, sex and gonad maturity status data from a study on payangka reproductive biology (n=69; 25 females and 44 males) collected from Bolano Sau Lake in August and October 2019 45 were also included in some analyses. Data were tabulated in Microsoft Excel 2010 and analysed descriptively. The length-weight relation analysis (n=107) was performed in Microsoft Excel 2010 (RRID:SCR_016137) using the log 10-transformed version of the formula W= a∙L b, where W is total body weight (g); L is total length (cm); a is the antilog of the intercept and b is the slope of the linear regression of the Log 10 transformed data. Analysis of mean size and size class distribution were implemented in R version 3.6.0 (RRID:SCR_001905) 70 through the Rstudio version 1.1.456 interface (RRID:SCR_000432), 71 using code from 72 with a size class interval of 1 cm. Microsoft Excel spreadsheet algorithms based on 72 were used to estimate mean size at first maturity (L50) and sex-ratio by size-class, also with a size class interval of 1 cm. The meristic formula was based on median values of the 6 meristic characters (dorsal fins D1 and D2, anal fin A, pectoral fin P, ventral fin V, caudal fin C) with spine counts given in Roman numerals and ray counts in Arabic numerals. Selected characters were compared with data on other Giuris spp. populations.

Table 1. Morphometric and meristic characters of payangka used in this study.

Morphometric characters (see Figure 2) Meristic counts
Code Description Code Description Code Description
X1-TL Total length X10-LP Length of caudal peduncle C Caudal fin rays
X2-SL Standard length X11-SD Tip of snout to base of anterior dorsal fin A Anal fin spines/rays
X3-HL Head length from tip of snout to operculum margin X12-DA Length of first anterior dorsal fin spine D1 Anterior dorsal fin spines/rays
X4-UJ Upper jaw length X13-DP Length of first posterior dorsal fin spine D2 Posterior dorsal fin spines/rays
X5-LJ Lower jaw length X14-PF Length of pectoral fin P Pectoral fin rays
X6-BD Body depth (maximum) X15-VF Length of ventral fin V Ventral fin rays
X7-HH Head height X16-AF Length of first anal fin spine
X8-ED Eye diameter
X9-CP Height of caudal peduncle X17-CL Tail (caudal) length

Figure 2. Morphometric characters of Bolano Sau Lake payangka measured in this study.

Figure 2.

Biodiversity conservation and fisheries

Qualitative data on biodiversity and fisheries in Bolano Sau Lake were collected during the payangka sample and environmental data collection. Secondary data were sourced from the baseline survey carried out from August to October 2019, 44 scientific literature, and reputable on-line sources. Primary and secondary data were analysed with respect to implications for biodiversity, including taxon conservation status, and fisheries management.

Results

Species identification and phylogenetic analysis

The nucleotide composition (nitrogen bases) of the mitochondrial cytochrome C oxidase subunit I (COI) gene sequence was guanine 19.3%, cytosine 29.0%, adenine 23.9% and thymine 27.8%. The NCBI blastn and BOLD Identification routines assigned the goby or gudgeon, known locally as payangka, to the Gobiiformes, Family Eleotridae, genus Giuris and taxonomic group labelled as Giuris margaritacea. Ten snakehead gudgeon Giuris margaritaceus sequences from Taal Lake, Luzon in the Philippines (accessions HQ654732-HQ654740) originally deposited as Ophieleotris aporos 52 had a very high similarity (99.84%–99.85%) with the payangka sequence from Central Sulawesi, Indonesia, GenBank accession OM674613. The condensed tree in Figure 3 shows the payangka sequence (labelled BIOSUB77_03) nested within a G. margaritaceus sub-clade containing these sequences. Additional analyses using the Neighbor-Join option in MEGA X produced an equivalent structure. Seven other Philippine sequences had similarities of 98.45–99.38%, including accessions HQ682711 and HQ682712 from Laguna Lake, also in Luzon 73 and accessions MG407388 to MG407392 from Lanao Lake in Mindanao. 64

Figure 3. Evolutionary relationships of payangka from Bolano Sau Lake with several gobioid taxa and Anabas testudineus as an outgroup.

Figure 3.

The Bolano Sau Lake payangka sequence is highlighted in yellow. Evolutionary relationships were estimated using the Maximum Likelihood routine in MEGA X. 62 The analysis comprised 96 sequences with 630 nucleotide positions and 100 bootstrap replicates. The blue clade comprises sequences deposited in GenBank or BOLD databases as Giuris margaritacea and synonyms including Ophieleotris aporos. The length of the triangles is proportional to the number of sequences. The branch scale is in number of substitutions per site.

The analysis of the Giuris clade incorporating sequences from 15 retrieved from the BOLD database ( Figure 4) shows that the payangka from Bolano Sau Lake is not closely related to other Giuris specimens from Sulawesi or other regions in Indonesia. The number of base differences per site for representative sequences from each clade in Figure 4 ( Table 2) shows that the genetic distance between the payangka and Giuris sp. from the Philippines was 0.002 to 0.016. Meanwhile the genetic distance between payangka and sequences from Indonesia in other Giuris clades was between 0.064 and 0.126, a range consonant with congeneric rather than conspecific relationships.

Figure 4. Evolutionary relationships of the genus Giuris, with Mogurnda adspersa as outgroup.

Figure 4.

The Bolano Sau Lake payangka sequence is highlighted in yellow and the Giuris laglaizei sequence MNHN-14583 from Philippe Keith is highlighted in turquoise. The Maximum Likelihood analysis in MEGA X 62 included 94 sequences with 580 positions and 100 bootstrap replicates. The red circles indicate node bootstrap values over 75%. The branch scale is in number of substitutions per site. Accession/Record details: see Table S1.

Table 2. Genetic distances between payangka and selected Giuris sp. from Philippines, Indonesia and Australia (part 1).

No Sequence details Sequence number
Accession/Record Taxon a Origin b 1 2 3 4 5 6 7 8 9 10 11
1 BIOSUB77_03 GS1 CS-BS
2 HQ654740 GS1 PH-L 0.002
3 HQ654739 GS1 PH-L 0.002 0.003
4 HQ682712 GS1 PH-L 0.013 0.014 0.014
5 MG407390 GS1 PH-M 0.013 0.014 0.014 0.026
6 MG407389 GS1 PH-M 0.016 0.018 0.018 0.029 0.003
7 None GS2 NS-T 0.029 0.031 0.031 0.039 0.032 0.032
8 AY722161 GS2 SUL 0.034 0.036 0.036 0.044 0.037 0.037 0.005
9 AF391368 GS2 AUS 0.031 0.032 0.032 0.041 0.034 0.034 0.002 0.006
10 BIFKJ35219 GM CS-A 0.122 0.124 0.124 0.135 0.120 0.122 0.120 0.126 0.122
11 BIFKJ51419 GM CS-L 0.126 0.128 0.128 0.139 0.124 0.126 0.120 0.126 0.122 0.003
12 BIFZI33517 GM MAL 0.111 0.112 0.112 0.123 0.109 0.111 0.109 0.115 0.111 0.018 0.021
13 BIFKJ52319 GV CS-L 0.066 0.066 0.068 0.077 0.077 0.077 0.059 0.064 0.061 0.130 0.126
14 BIFZI36317 GV MAL 0.068 0.069 0.069 0.079 0.078 0.078 0.061 0.066 0.062 0.124 0.120
15 BIFZI13517 GV LO 0.066 0.068 0.068 0.077 0.076 0.076 0.062 0.068 0.064 0.126 0.122
16 KU692513 GV J-B 0.064 0.066 0.066 0.075 0.075 0.075 0.061 0.066 0.062 0.124 0.120
17 KU692508 GV J-E 0.066 0.068 0.068 0.077 0.076 0.076 0.062 0.068 0.064 0.126 0.122
18 BIFKJ34919 GT CS-A 0.121 0.119 0.122 0.133 0.121 0.123 0.115 0.121 0.117 0.051 0.054
19 BIFKJ50919 GT CS-L 0.119 0.117 0.121 0.131 0.119 0.121 0.113 0.119 0.115 0.054 0.058
20 BIFZI08017 GT LO 0.119 0.117 0.121 0.131 0.119 0.121 0.113 0.119 0.115 0.054 0.058
21 KU692506 GT BAL 0.124 0.123 0.126 0.137 0.124 0.126 0.119 0.125 0.121 0.054 0.054
22 JN021219 GT PH-P 0.124 0.123 0.126 0.137 0.124 0.126 0.119 0.125 0.121 0.054 0.054
23 AF391367 MA AUS 0.145 0.147 0.147 0.158 0.147 0.143 0.141 0.145 0.143 0.161 0.163
a

Taxon: GS = Giuris sp.; GM = Giuris margaritaceus; GT = Giuris tolsoni; GV = Giuris viator; MA = Mogurnda adspersa (outgroup).

b

Origin: AUS = Australia; AUS/S = Australia or Sulawesi (actual site unknown); PH= Philippines; LU = Luzon (Lake Taal); M = Mindanao; P = Panay; Indonesia: CS= Central Sulawesi: A = Ampana; BS = Lake Bolano Sau; L = Luwuk; NS-T = North Sulawesi, Tondano Lake; SUL = Sulawesi, location unknown; BAL = Bali; LO = Lombok; MAL = Maluku; J-B = Java, Banten; J-E = East Java.

Table 2. (continued) Genetic distances between payangka and selected Giuris sp. from Philippines, Indonesia and Australia (part 2).

No Sequence details Sequence number
Accession/Record Taxon a Origin b 12 13 14 15 16 17 18 19 20 21 22
1 BIOSUB77_03 GS1 CS-BS
2 HQ654740 GS1 PH-L
3 HQ654739 GS1 PH-L
4 HQ682712 GS1 PH-L
5 MG407390 GS1 PH-M
6 MG407389 GS1 PH-M
7 None GS2 NS-T
8 AY722161 GS2 SUL
9 AF391368 GS2 AUS
10 BIFKJ35219 GM CS-A
11 BIFKJ51419 GM CS-L
12 BIFZI33517 GM MAL
13 BIFKJ52319 GV CS-L 0.015
14 BIFZI36317 GV MAL 0.113 0.005
15 BIFZI13517 GV LO 0.115 0.006 0.005
16 KU692513 GV J-B 0.113 0.011 0.009 0.011
17 KU692508 GV J-E 0.115 0.013 0.011 0.013 0.002
18 BIFKJ34919 GT CS-A 0.061 0.133 0.130 0.129 0.127 0.125
19 BIFKJ50919 GT CS-L 0.065 0.131 0.128 0.127 0.125 0.123 0.006
20 BIFZI08017 GT LO 0.065 0.131 0.128 0.127 0.125 0.123 0.006 0.000
21 KU692506 GT BAL 0.065 0.129 0.127 0.125 0.123 0.121 0.006 0.006 0.006
22 JN021219 GT PH-P 0.065 0.129 0.127 0.125 0.123 0.121 0.006 0.006 0.006 0.000
23 AF391367 MA AUS 0.163 0.141 0.137 0.135 0.141 0.143 0.161 0.155 0.155 0.155 0.155
a

Taxon: GS = Giuris sp.; GM = Giuris margaritaceus; GT = Giuris tolsoni; GV = Giuris viator; MA = Mogurnda adspersa (outgroup).

b

Origin: AUS = Australia; AUS/S = Australia or Sulawesi (actual site unknown); PH= Philippines; LU = Luzon (Lake Taal); M = Mindanao; P = Panay; Indonesia: CS= Central Sulawesi: A = Ampana; BS = Lake Bolano Sau; L = Luwuk; NS-T = North Sulawesi, Tondano Lake; SUL = Sulawesi, location unknown; BAL = Bali; LO = Lombok; MAL = Maluku; J-B = Java, Banten; J-E = East Java.

Phenotypic characters

The TL of Giuris sp. specimens (n=107) ranged from 7.9 cm to 16.3 cm, while weight ranged from 4.96 g to 61.0 g. The specimens in the morphometric and meristic study (n=42) ranged in size from 9.95 to 15.25 cm TL (mean 12.58 cm). In the sex-disaggregated length data set (n=69), variance was unequal between males and females (two-sample F-test, P < 0.01). The overall mean length was 12.95 cm. There was a highly significant ( P < 0.001, two-tail t-test assuming unequal variance) difference in mean length between males (13.56 cm TL, n=44) and females (11.62 cm TL, n=25), with overlapping length distributions ( Figure 5).

Figure 5. Total length (TL) distribution of male (n=44) and female (n=25) payangka ( Giuris laglaizei) from Bolano Sau Lake.

Figure 5.

Dotted lines indicate mean TL for male (blue) and female (red) fish.

Mean length at maturity (L 50) was 9.3 cm TL for females and 11.5 TL for males. Sex ratio was significantly ( P < 0.05) different from 1:1 for all size classes except 12–13 cm TL, with female dominance below 12 cm TL and male dominance above 13 cm TL. The length-weight relationship was L=0.0087∙W 3.162 ( Figure 6), with a strong correlation (R 2=0.901) and b > 3, indicating a mildly allometric positive growth pattern.

Figure 6. Length-weight relationship of payangka ( Giuris laglaizei) from Bolano Sau Lake (n=107).

Figure 6.

A synopsis of the 17 morphometric characters measured for Giuris laglaizei from Bolano Sau Lake ( Table 3) presents the data as absolute values (in mm) and as dimensionless ratios to TL. These data indicate considerable variability in most characters. The 6 meristic counts of Giuris laglaizei from Bolano Sau Lake ( Table 4) yield a meristic formula based on median values of D VI-I,8 A I,8 P 13 V I,5 C15.

Table 3. Bolano Sau Lake payangka (n=42) morphometric characters.

Code ( Table 1) Absolute values (mm) Ratio to total length (X1-TL)
Minimum Maximum Mean SD Minimum Maximum Mean SD
X1-TL 99.5 152.5 125.8 14.6 - - - -
X2-SL 80.1 80.1 101.0 12.4 72.1% 90.0% 80.3% 2.8%
X3-HL 24.9 48.1 33.2 5.0 20.1% 31.5% 26.4% 2.0%
X4-UJ 6.0 9.1 7.3 0.8 4.1% 7.2% 5.8% 0.6%
X5-LJ 6.5 9.7 7.8 0.8 4.7% 7.8% 6.3% 0.6%
X6-BD 16.7 39.6 27.4 4.9 15.9% 27.4% 21.7% 2.1%
X7-HH 11.2 37.6 22.7 5.7 10.7% 27.0% 17.9% 3.3%
X8-ED 4.5 7.8 5.9 0.6 3.6% 6.0% 4.7% 0.5%
X9-CP 13.5 22.1 17.9 2.5 10.4% 16.5% 14.2% 1.0%
X10-LP 19.3 31.7 25.1 3.1 16.6% 26.7% 20.0% 1.9%
X11-SD 27.9 54.6 45.4 5.2 26.9% 39.4% 36.1% 2.2%
X12-DA 13.2 41.1 20.6 4.9 12.7% 27.0% 16.3% 2.9%
X13-DP 21.2 51.7 34.5 8.2 16.9% 36.0% 27.4% 5.4%
X14-PF 16.6 31.2 23.6 3.2 15.2% 21.4% 18.7% 1.3%
X15-VF 14.0 30.1 21.3 3.5 13.3% 20.4% 16.8% 1.5%
X16-AF 13.3 33.2 22.3 4.9 12.3% 22.4% 17.6% 2.7%
X17-CL 18.3 34.4 26.7 4.1 17.4% 25.7% 21.2% 1.7%

Table 4. Bolano Sau Lake payangka meristic characters (n=42).

Fin Spines Rays
Code Description Minimum Maximum Median
D1 Anterior dorsal VI * - - -
D2 Posterior dorsal I 7 8 8
A Anal I 8 10 9
P Pectoral - 12 15 13
V Ventral I 4 5 5
C Caudal 0 11 17 15
*

One specimen V.

Environmental and fisheries data

Water quality parameters tended to vary between sampling stations and times ( Table 5). The ranges considered normal for Indonesian freshwater bodies used for fisheries (classes 2 and 3) according to Government Regulation No. 82/2001 (RI 2001) are also provided for the parameters covered under this regulation. During the collection of payangka samples and water quality data, qualitative data on environmental conditions were noted. These included visual records (photographs) of general conditions; for excerpts from the visual record see Figure 7. Originally Bolano Sau Lake was surrounded by lowland tropical rainforest and sago palm dominated wetlands. Observations showed considerable anthropogenic impacts, including extensive land-use change leading to erosion and sedimentation. Extensive areas around the lake had been converted for agriculture and human habitation ( Figure 7a), and few sago palms remained in the riparian wetlands ( Figure 7b).

Table 5. Water quality data for Bolano Sau Lake (August-December 2019).

No Parameter Unit Range Standard 109
1 Water temperature °C 31.30-33.42 Normal ± 3°C
2 Visibility m 0.22-0.67 -
3 pH 8.06-8.57 6-9
4 Total suspended solids (TSS) mg/L 75.04-183,99 -
5 Dissolved oxygen (DO) mg/L 2.70-3.90 3-4
6 Total alkalinity mg/L 1.5-11.5 -
7 Hardness mg/L 174.28-222.54 -
8 Total ammonia nitrogen TAN (NH3+NH4 +) mg/L 0.05-0.07 -
9 Nitrate (NO3-N) mg/L <0.01-0.6 <0.02
10 Orthophosphate (PO4-P) mg/L <0.01 -

Figure 7. Photographs of Bolano Sau Lake in Central Sulawesi, Indonesia show extensive deforestation (a) and riparian wetlands with few remaining sago palms (b).

Figure 7.

(Photographs taken by Samliok Ndobe).

During the baseline survey, 44 fish samples collected through experimental fishing in collaboration with local fishermen using 3½″ gillnets. 45 Six species were reported: Nile tilapia Oreochromis niloticus (comprising nearly 77% of the experimental catch), payangka, striped snakehead ( Channa striata), climbing perch ( Anabas testudineus), gourami ( Trichogaster sp.), a tank goby ( Glossogobius sp.), and the Mozambique tilapia ( Oreochromis mossambicus). Local fishermen also reported catching common carp ( Cyprinus carpio) and freshwater eels ( Anguilla sp.) in the lake. This survey also revealed a predominantly sandy (67-73%) lake substrate with some silt (14-22%) and clay (11-13%). Phytoplankton concentration was 14,580/L, dominated by Cylindrospermopsis spp., Dinobryon spp., and Cyclotella spp. Mean zooplankton density was 28,890/L, dominated by unidentified larvae (Annelida, Crustacea (shrimps), Mollusca (bivalves) and fish) and Paramecia.

Discussion

Giuris phylogeny, biogeography and first species record

Barcode sequences (COI gene sequence fragments) over 600 bp are considered sufficient for differentiating between animal species, with 98-100% similarity generally indicating species identity. 56 The NCBI blastn and BOLD Identity routine results place the specimen collected (GenBank accession OM674614) within the taxon named as Giuris margaritacea (Chordata, Actinopterygii, Gobiiformes, Eleotridae) in these databases. Some unexpected sequence placements may have been due to errors in specimen identification, as might be expected within this taxonomic group. 47 , 48 Examples include the nesting of Xenisthmus sp. from Australia (accession AF391372 47 ) in the Mogurnda clade, Ophiocara porocephala from Bangladesh (accession MK572389 74 ) in a Giuris margaritaceus sub-clade, and well-defined clades with a mixture of species names in the genera Eleotris and Gobiomorus. The nesting of O. porocephala from Bangladesh in the G. margaritacea clade lends credence to the possibility that some reports of payangka as O. porocephala may be similar cases, and point to a possible history of mistaken identity between two taxa which are not closely related genetically.

First recorded and described from the Solomon Islands, 75 the snakehead gudgeon G. margaritaceus has been thought to have a widespread distribution in the Indo-Pacific region. 76 The gudgeon specimen examined by Valenciennes and named as Giuris margaritacea Valenciennes 1837, with the French common name éléotris perlé, was 6 inches long and collected from Vanikolo in the Solomon Islands by Quoy and Gaimard. 75 G. margaritaceus is reported from Madagascar 77 and the Indian sub-continent 78 to Papua New Guinea and Pacific Islands, 75 , 77 , 79 82 and from the Philippines 52 , 83 to northern Queensland and north-eastern Australia. 47 , 77 , 84 , 85 Considered native to Indonesia, it has been reported from Sumatra 86 in the west to Papua 51 in the east, including Sulawesi. 6 , 14

Historically, the large number of G. margaritaceus synonyms appears related to the geographical distribution of this taxon. Original references ( e.g. Cuvier and Valenciennes, 1837 75 and Sauvage, 1880 87 ) tend to give different species names to specimens collected from different islands or regions, even when they note a high level of similarity between morphological traits, with descriptions typically based on a small sample (in many cases just one specimen). Subsequent studies lead to a consensus view of the genus Giuris as monophyletic, with G. margaritacea or G. margaritaceus as the most senior (and hence valid) species name, as reflected in databases including the NCBI GenBank and BOLD, FishBase, the World Register of Marine Species (WoRMS), and Eschmeyer's Catalog of Fishes. However, Kottelat 46 noted that: “The wide distribution and the observed variability of G. margaritaceus suggests that more than one species might be confused under this name”. The structure of the trees in this study ( Figures 3 and 4) not only show deep divisions consonant with multiple species within Giuris but also indicate widespread misidentification within Eleotridae and a need for taxonomic revision within other eleotrid taxa.

The deep divisions within the putative G. margaritaceus clade in Figure 3 are similar to the deep divisions in Glossogobius giuris from India. 49 A study on the ichthyofauna of Java and Bali 88 reported two BOLD BINs for Giuris margaritacea from this region, with a genetic distance of 12.56%, indicating more than one species in this region of Indonesia. Recent studies on the genus Giuris within the Indonesian Archipelago 15 and other regions of the Indo-Pacific 53 collectively resurrect and redescribe three species previously synonymised with G. margaritaceus ( G. laglaizei Sauvage 1880; Giuris aporocephalus Macleay 1884; Giuris tolsoni Bleeker 1854), redescribe Giuris margaritaceus, and describe four new species ( Giuris charpini Keith & Mennesson 2020; Giuris yahayai Keith & Mennesson 2020; Giuris caussei Keith, Mennesson & Lord 2020; and Giuris viator Keith, Mennesson, Lord, Hubert 2020). However, the analyses in this study indicate the range distributions for Giuris species in Keith et al. (2020) and Keith & Mennesson (2020) 15 , 53 are still incomplete.

It is interesting that no Giuris sequence from Indonesia were closely related to the payangka from Bolano Sau Lake ( Figure 4), and evolutionary relationships within Giuris do not necessarily seem to follow readily discernible patterns based on past or present geographical distance. For example, as in Ref. 53, Australian and Philippine clades (the latter including payangka from Bolano Sao Lake) seem more closely related to each other than to species found in areas lying between these two regions ( Figure 4; Table 2), with one of the two barcoded lacustrine Giuris populations from the northern arm of Sulawesi (Bolano Sau and Tondano) belonging to each of these clades. The tree topography ( Figure 4) and location of the closest matching sequences (Taal Lake, Luzon, Philippines) strongly suggested that the payangka, as well as the Philippine sequences within which it is nested, are in fact Giuris laglaizei Sauvage 1880 (originally Eleotris (Giuris) laglaizei). This species was first described from a specimen with the local name poi-poi collected near Manila in the Philippines. 87 Unfortunately, sequences from Ref. 53 were not available in either GenBank or BOLD databases at the time of this study. However, Philippe Keith of the National Museum of Natural History of Paris kindly provided a sequence of G. laglaizei from the Philippines (Number 14583 in Ref. 53), which was not yet available in public databases. As expected, this sequence nested within the same Giuris clade as the payangka ( Figure 4). The identity was 99.83% (one nucleotide difference in the aligned dataset) with a genetic distance of ≈ 0.00136. Based on this result, the Bolano Sau Lake payangka can be identified as G. laglaizei, a first record for Sulawesi and Indonesia, considerably extending the known distribution of this species.

Comparison with Ref. 15 and Ref. 53 strongly suggests that the Australian sister clade to that containing the payangka in Figure 4 is most likely Giuris aporocephalus Macleay 1884. The six specimens from Tondano Lake resolved within this clade. If indeed the Giuris in Tondano Lake are descended from introduced payangka sourced from Limboto Lake over 100 years ago, then it is likely that the payangka in Limboto Lake also belong to this clade, and are therefore not the same species as the payangka in Bolano Sau Lake, even though these two lakes are relatively close to each other. However homologous barcode (mtDNA COI) sequences for Limboto Lake payangka are not yet available, despite recent research using the Cyt-b genetic marker. 36

Table 6 shows the known and (strongly) suspected species identities and distributions of species within the genus Giuris. This study brings the number of Giuris species in Indonesia and Sulawesi to five, with four species in freshwater ecosystems around the coasts of Tomini Bay.

Table 6. Species in the genus Giuris and their known (X) or suspected ( X) distributions.

No Giuris Species a Indonesia b Other Countries c
O A L T S M K B J P N A C J B M
1 G. aporocephalus X X X X
2 G. charpini X
3 G. caussei X
4 G. laglaizei X X
5 G. margaritaceus X X X X X X
6 G. tolsoni X X X X X X X X
7 G. viator X X X X X X
8 G. yahayai X
a

Sources: No. 1-8: Ref. 53; No.1: inferred from Ref. 25 and Ref. 50; No. 4: this study; No. 5-7: Ref. 15; No. 7: Ref. 74.

b

O = Bolano Sau Lake (this study): A = Ampana; L = Luwuk; T = Tondano Lake, North Sulawesi (possibly also Limboto Lake in Gorontalo); S = Sulawesi, unknown site; M = Maluku; K = Lombok; B = Bali; J = Java; Grey shading and bold font = sites in Sulawesi.

c

P = Philippines; N = Papua New Guinea; A = Australia; C = Pacific islands; J = Taiwan and Japan (Okinawa); B = Bangladesh; M = Madagascar, Mayotte and Comoros.

Morphometric and meristic characters within Giuris

Data on the length-weight relation of Giuris sp. appear to be limited and confined to Indonesia. Length-weight relation parameters and size ranges of payangka ( Giuris laglaizei) from Bolano Sau Lake and other Giuris populations in Indonesia ( Table 7) show a general tendency towards allometric positive growth patterns. The mildly allometric positive length-weight relation for Bolano Sau payangka is within the range reported for other populations of Giuris sp. The value of b (3.162) is slightly lower than that reported from Tondano Lake (Makmur et al. 2019) and Santani Lake in Papua and close to the lower limit of Giuris sp. from Limboto Lake. However, a value of b > 3 indicates that food availability is unlikely to be a limiting factor.

Table 7. Length-weight parameters and size range of Giuris sp. from sites in Indonesia.

Site Sample Length-weight parameters Source
n Size range (cm) a b
1. Bolano Sau Lake 107 7.9-16.3 0.0087 3.162 This study
2a. Tondano Lake (male) 249 10.7-19.0 0.0054 3.27 10
2b.Tondano Lake (female) 353 10.5-20.5 0.004 3.38
3. Limboto Lake 309 no data 0.003-0.005 3.13-3.36 108
4. Sentani Lake, Papua 64 no data 0.0044 3.36 ( http://www.fishbase.org)

The length distribution of Giuris spp. specimens in this study was biased towards fish large enough to have potentially achieved sexual maturity. This is important because all samples were collected with gears (throw nets and gillnets) currently used by the Bolano Sau fishing community. With respect to the gillnet fishery, 67% of fish caught during the baseline survey of Bolano Sau Lake were found to be sexually mature, with a mean size at first maturity (both sexes combined) of 11.92 cm. 45 Re-analysing the data disaggregated by sex ( Figure 5), the mean size at capture was greater than the estimated size at sexual maturity for both sexes. This analysis also indicates that the fishery is selective for males, and could explain the male bias previously reported for this population. 45

A study of Giuris spp. (most likely G. aporocephalus) in Tondano Lake, North Sulawesi 10 also found a larger mean length in males (14.15 cm) than in females (13.75 cm), although the difference was less marked than for the Bolano Sau Lake payangka identified as G. laglaizei in this study. Furthermore, mean and maximum sizes sampled for both sexes in Tondano Lake were larger than in Bolano Sau Lake ( Table 7). The generally smaller size of payangka in Bolano Sau Lake compared with Tondano Lake 10 could be related to inter-specific differences and/or environmental factors. A comparison between selected morphometric characters of the Bolano Sau Lake payangka and eight Giuris species recently described or re-described is presented in Table 8 while Table 9 shows comparative data on meristic characters.

Table 8. Comparison of selected morphometric characters within the genus Giuris.

No Species a n Nearest whole percentage of standard length (SL)
Head length Body depth CP b depth Jaw length Eye diameter
1 Giuris laglaizei ( payangka) 42 27-40 19-35 12-22 c 6-11 4-7
2 G. aporocephalus 12 31-36 20-25 13-16 9-11 5-7
3 G. caussei 2 36 22-25 14-16 10 4-6
4 G. charpini 8 31-33 19-25 13-16 10-11 5-7
5 G. laglaizei 7 30-35 22-27 14-17 8-11 5-6
6 G. margaritaceus 12 30-35 20-25 13-16 10-11 6-8
7 G. tolsoni 11 31-37 20-24 13-15 9-12 6-7
8 G. viator 10 31-35 20-24 14-15 10-12 6-8
9 G. yahayai 10 31-36 26-39 16-20 9-12 4-6
10a G. margaritacea 5 M 32 24 12 6 6
10b G. margaritacea 5 F 32 25 13 6 5
a

Sources: No. 1: This study; No. 2-9: Ref. 15; No. 10: Ref. 10; Tondano Lake, 10a = males, 10b = females, mean values given.

b

CP = caudal peduncle; c One outlier each with 12% and 22%, remainder 15-20%.

Table 9. Comparison of meristic characters within the genus Giuris.

No Species a n Fin spines and rays b
D1 D2 A P V C
1 Giuris laglaizei ( payangka) 42 V-VI I,7-8 I,8-10 12-15 I,4-5 11-17
2 G. aporocephalus 12 VI I,8 I,9 14-15 I,5 13-14
3 G. caussei 2 VI I,8-9 I,9 14-15 I,5 13
4 G. charpini 8 VI I,8 I,8-9 13-14 I,5 13-14
5 G. laglaizei 7 VI I,8 I,9 15 I,5 14-15
6 G. margaritaceus 12 VI I,8 I,9 14-15 I,5 13-14
7 G. tolsoni 11 VI I,8 I,9 14 I,5 13-15
8 G. viator 10 VI I,8 I,9 14 I,5 13-14
9 G. yahayai 10 VI I,8-9 I,9 14 I,5 15
10 G. margaritacea (5 male, 5 female) 10 VI I,9 I,9 16 - -
11 G. margaritacea no data VI I,8 I,9 14-15 - -
a

Sources: No. 1: This Study; No. 2-9: Ref. 53; No. 6-8: also Ref. 15; No. 10: Ref. 10; No. 11: http://www.fishbase.org.

b

D = dorsal fins (D1 = anterior; D2 = posterior); A = anal fin; P = pectoral fins; V = ventral (pelvic) fins; C = caudal fin.

Unlike the genetic (DNA barcoding) data, a comparison between morphometric and meristic characters of the Bolano Sau Lake payangka and the eight Giuris species recently described or re-described 15 , 53 in Tables 8 and 9 does not give a clear indication regarding the taxonomic identity of the Bolano Sau Lake Giuris population, although some characters are similar to the Philippine Giuris laglaizei. The wider range in Bolano Sau Lake payangka compared with most Giuris species for most of the characters could be related to the larger number of samples (42 compared with 2-12 fish). Although some morphometric characters have been used in discussing or determining the characteristics of species within the genus Giuris, in particular the resurrecting of synonymised species and the description of new species resulting in a total of eight now-recognised Giuris species, 15 , 53 there are many similarities. All eight are described as having a body shape which is more ovoid than elongated, with G. yahayai also having a somewhat backed appearance. Other common features include sexual dimorphism and known or suspected amphidromy.

Life history of payangka (genus Giuris)

Amphidromy as described by McDowall (2007) is characterised by “reproduction in fresh water, passage to sea by newly hatched larvae, a period of feeding and growing at sea usually a few months long, return to fresh water of well-grown juveniles, a further period of feeding and growing in fresh water, followed by reproduction there” and can be obligate or facultative. 89 The presence of all life stages including adults (payangka) and larvae (nike) in Tondano Lake 25 indicates that amphidromy is most likely facultative in at least some Giuris species. Mean length at first maturity in Tondano Lake payangka has been reported as 10.75 cm (females) 10 and 13.4 cm (males)/13.7 cm (females). 30 Reported values for fecundity range from 12,000 to 127,000, increasing with female size. 10 , 28 Eggs fertilised in the morning hatch the following night and the larvae begin swimming after about 10 minutes, even though fins have not yet developed. 28 Although in the past all or some of these larvae may have been carried to the sea and completed an amphidromous life-cycle, the Tondano Lake Giuris population seems to have adopted a fully freshwater lifecycle. It has been proposed that, although this non-migratory lifestyle may have evolved within the population over a more extended time, it may have become the prevailing mode of reproduction as an adaptation to the construction of three hydroelectric power plant dams preventing downstream and upstream migrations. 25 Alternatively, if the Tondano Lake payangka was indeed introduced in 1902 from Limboto Lake, 34 then the adaptation may date from this introduction. The lack of genetic variation in the COI barcode for the six specimens sequenced by Pangemanan et al. 25 ( Figure 4) may be the result of a small founder population followed by such selection.

Whether amphidromy is obligate or facultative is an important consideration with respect to the Bolano Sau Lake payangka population. Despite the lake’s proximity to Tomini Bay, there is no permanent feature enabling fish to move between the lake and the sea. However, according to local fishermen seasonal flooding occurs at times during the raining season, creating a temporary connection. No larvae or small juveniles were found during the survey. While this may be an artefact of the collection methods used and/or the timing of the sampling, local fishermen do not catch nike in the lake, and did not report large schools of larvae. Further observations (monitoring) of Bolano Sau Lake payangka reproductive patterns and identification of early life stages in and/or near to the lake could shed light on this question.

If the payangka in Bolano Sau Lake is amphidromous and found in other waterbodies nearby, there is hope for natural recruitment from the wider Tomini Bay population to boost the population in the lake. The facilitation of such a process through the transport of migrating larvae (nike) is unlikely to be a wise move, as shoals of nike are typically multispecies, comprising several genera of Gobiidae and/or Eleotridae 11 , 23 , 90 as well as other taxa such as glass eels of the genus Anguilla and crustacea. 12 , 19 21 Therefore, shoals of nike are unlikely to be composed solely of Giuris laglaizei or indeed other species currently present in Bolano Sau Lake.

It is also possible that the payangka arrived in Bolano Sau Lake at some period(s) in the past when geological and hydrological features were more conducive to the migrations of diadromous fishes, and then adopted a fully freshwater life cycle, as seems to be the case for the payangka in Tondano Lake. In this case, it might be necessary to support recovery of the severely depleted Giuris population through well-planned release of captive bred fish. Initial steps towards captive breeding of the Tondano Lake payangka ( Giuris sp.) have been taken, including ex-situ husbandry of larvae and juveniles. 28 If indeed the Giuris sp. in Tondano Lake became established after the introduction of payangka from Limboto Lake in 1902, 34 , 91 it would indicate that such an approach might be successful. However, any such moves should follow the national guidelines for re-stocking, 92 in particular with respect to biosecurity (e.g. pests and disease), as well as ensuring the fish used for re-stocking are indeed the same species and ideally come from populations with similar genetic and other characteristics.

From an ecological perspective, trophic relations are an important consideration. Species reported as preying on G. margaritacea and/or O. porocephala include the piscivorous goby Glossogobius giuris. 93 The payangka in Tondano Lake is omnivorous but appears to undergo an ontogenetic shift in dietary preference, becoming increasingly carnivorous. Juveniles in the 12-30 mm TL range are reported as planktivorous, with the proportion of zooplankton relative to phytoplankton increasing as the fish grow; they begin to prey on Caradina shrimp at around 30 mm TL and on molluscs (Gastropods) and fish (including smaller conspecifics) at around 36-40 mm TL. 31 However, such data are lacking for the payangka from Bolano Sau Lake, and indeed for the species G. laglaizei in the Philippines.

Conservation status and fisheries management

The IUCN Red List of Threatened Species re-assessment of the snakehead gudgeon G. margaritacea in 2019 76 lists the species under the Least Concern (LC) category, with the rationale that the species is widespread and common in parts of its range, and that it is found in a wide variety of habitats. With respect to fisheries, the assessment mentions that this taxon is harvested for the international aquarium trade and in localised areas is also used for subsistence level consumption and as a bait fish, but levels of exploitation are unknown. The assessment also notes the need for further taxonomic work to determine if the Western Pacific and Western Indian Ocean subpopulations are conspecific. Recent genetic evidence validates this concern as the newly described Giuris yahayai appears to be limited to the Indian Ocean, 53 while seven species have been identified in the Indo-West Pacific with at least three species present in eastern Central Sulawesi, the Moluccas, and the Philippines. 15 , 53 The boundaries of each species cannot as yet be determined with certainty; however, the known ranges of several species vary in extent and in some cases overlap. 53 Together with the identification of the payangka from Bolano Sau Lake as G. laglaizei, the reanalysis of Giuris sequences from Tondano Lake in Pangemanan et al., (2020) as belonging to a different clade from all other Sulawesian Giuris sequences (most likely G. aporocephalus) means that at least five Giuris species are present in Sulawesi, with four species found in Tomini Bay watersheds. Future barcoding studies may further increase the known range of one or several Giuris species.

The deep divisions in the genus Giuris call into question the validity of the LC status 76 for at least some of the species formerly considered as a single taxon, G. margaritacea. The fragmented nature and uneven size of known distributions indicate that some of the eight species currently apparent within this genus could be at risk from serial extirpation and even extinction. At least one Giuris population (species unknown) from the Proserpine River in Australia appears to have been lost. 76 , 85 It may never be known if this was a now extinct species or an extirpated population of a widespread species.

The principal threats mentioned in the Red List assessment 76 are subsistence and ornamental fisheries. However, alien or exotic invasive species introductions are considered a major threat to freshwater fish biodiversity worldwide. 94 In particular, wild Nile tilapia ( Oreochromis niloticus) populations are increasingly widespread across Indonesia 39 42 , 95 97 and have been implicated in the decline of native species in many inland waters across the Indonesian Archipelago. 39 , 40 , 97 99 Mechanisms through which introduced species, including the Nile tilapia, could affect the payangka and other native fishes include competition for food and habitat; the introduction and transmission of parasites and disease; predation, especially on eggs and larvae or juveniles; and behaviour leading to habitat degradation 39 , 41 , 97 , 100 102

The majority of data on Giuris fisheries are from Tondano Lake in North Sulawesi, approximately 500 km east of Bolano Sau Lake. Payangka has historically been the main fisheries species in Tondano Lake, comprising 35% of the total production volume in 1980. 28 , 100 All sizes from 9 mm to 200 mm are reported in fisheries catch 28 , 31 ; however the nike fisheries target postlarvae and fingerlings in the 12-30 mm TL range, while payangka catches were dominated by the size range 105-135 mm TL, with few larger individuals. While the nike fishery is economically viable, with relatively high income and profit margins, 27 concerns have been expressed regarding the aggregate ecological sustainability of the fisheries targeting payangka in the lake. 30 Strong indications of overfishing were already apparent around 30 years ago, with annual catch volume reduced to 25% of that in 1980-1985 by 1990. 31 The introduction of alien species has been implicated as a causal factor of declining Giuris catches and abundance. In North Sulawesi, introduced catfish ( Clarias sp.) are reported to have had negative impacts on payangka stocks in Tondano Lake. 100 However, it seems the payangka itself may be an introduced species in this waterbody. 34

With respect to the Bolano Sau Lake payangka, this once common and popular food fish has become increasingly rare since the introduction of alien species under government programs intended to increase fisheries production, although overfishing is also suspected as a factor. 45 In Bolano Sau Lake, government-supported “re-stocking” has occurred in the lake over several decades. 35 The most abundant alien species in 2019 was the Nile tilapia ( Oreochromis niloticus), while other introduced alien species included the Mozambique tilapia ( Oreochromis mossambicus) and gourami ( Trichogaster sp.). Two other species, the striped snakehead Channa striata and climbing perch Anabas testudineus, are widely considered as native fishes by Sulawesians and figure in many traditional dishes, although they may have been introduced to Sulawesi, possibly in prehistoric times. 6 , 103 , 104 With respect to introduced species, it is interesting to note that not all species introduced to Bolano Sau Lake have become established or invasive. For example, the common carp ( Cyprinus carpio) had been repeatedly introduced prior to 2016, 35 but none were seen during the surveys in 2019. Fishermen reported that after the introduction they did catch carp; but the numbers dwindled over time, in contrast to the Nile tilapia ( O. niloticus) which quickly became the dominant species in the lake.

The IUCN Red List assessment 76 describes the habitat of G. margaritaceus as streams, while in Northern Australia the most common habitat is described as small rainforest creeks and wetlands located close to the river mouth 85 ; lacustrine habitat is not mentioned. However, Giuris species have been found in both coastal streams and lakes, and would seem that lakes are a key habitat for at least some Giuris species in Indonesia, and specifically in Sulawesi, as well as in the Philippines and Papua New Guinea. 15 , 52 , 53 , 105 It would seem likely that G. laglaizei may be a predominantly lacustrine species, as the known Philippine populations are all lacustrine, as is the Sulawesi population in this study.

As in many regions worldwide, 94 lakes in this region are typically subject to significant anthropogenic disturbance leading to habitat alteration and degradation. 40 , 41 , 106 , 107 This includes lakes known to have Giuris populations such as Limboto and Tondano, 100 , 108 with negative impacts on payangka stocks including changes in condition factor. 100 Quantitative data ( Table 5) and qualitative observations indicate potential threats to the Bolano Sau Lake environment as a habitat for fish. Parameters of concern include temperature, consistently above 31°C with a maximum in excess of 33°C, and dissolved oxygen (DO). The latter was consistently below 4 mg/L and sometimes below 3 mg/L, the lower limit considered acceptable by Government Regulation No. 82/2001. 109 The low levels of DO may be related to the elevated temperature, as the capacity to retain oxygen is inversely correlated with water temperature. 110 The gill oxygen limitation theory (GOLT) proposed by Pauly 111 posits that fish growth and size are limited by the availability of oxygen; higher temperatures increase metabolic rates, lowering the size at which the limitation will be reached. Thus, the high temperature and low DO values recorded in Bolano Sau Lake could be a contributing factor to the relatively small maximum size of the payangka. Locally high levels of nitrate (NO3-N) may be due to sewage and/or fertiliser run-off, and could and act in synergy with the temperature and low oxygen conditions, especially as toxicity increases with temperature. 110 Combined with the observed land use/land cover changes, these data call for integrated watershed management.

Conclusion

The COI barcoding approach identified a fish locally called payangka from Bolano Sau Lake in Central Sulawesi Indonesia as the recently resurrected Giuris laglaizei. This represents the first record of G. laglaizei in Indonesia and indeed the first outside the Philippines. However, in contrast to the molecular approach, the phenotypic characters measured or counted in this study could not enable a definitive identification of the Giuris sp. in Bolano Sau Lake to species level. In addition, other characteristics noted during this study and other visits to the study site are ambiguous in terms of taxonomic identification. For example, both colour and general appearance vary between sexes, stage of the reproductive cycle, and even habitat characteristics within the lake. These results and considerations strongly indicate the advisability of further research using molecular biology methods to resolve the taxonomic identity of other Giuris sp. populations throughout the distribution of this genus, including the use of multiple molecular markers.

The phylogenetic analysis of Giuris highlights the complex biogeography of this genus in Indonesia, with at least four Giuris species present in the coastal regions around Tomini Bay and five in Sulawesi. These findings call into question the IUCN Red List Least Concern status of the taxonomic unit, until recently named Giuris margaritacea, now revealed as a genus comprising at least eight species. While identifying the species present is a first step towards managing and preserving fish biodiversity in inland waters, this needs to be followed by appropriate management. The threats to and sharp decline of the Bolano Sau Lake payangka population are reflected in similar threats and/or trends reported for other Giuris spp. populations, and could result in serial extirpations if unchecked. From both biodiversity and fisheries perspectives, there is a need to manage freshwater fisheries resources to conserve native fish species still present, including the Bolano Sau Lake payangka.

Data availability

Underlying data

Harvard Dataverse: Bolano Sau Lake Fish Data https://doi.org/10.7910/DVN/JL5JP9. 69

This project contains the following underlying data:

  • Giuris_payangka_data_2019.tab (dataset)

Data are available under the terms of the Creative Commons Zero “No rights reserved” data waiver (CC0 1.0 Public domain dedication).

NCBI Metazoan Mitochondrial COX1 SUB10960949 63 :

Extended data

Harvard Dataverse: GenBank Accessions, BOLD Records (mitochondrial COI gene sequences) and other nucleotide sequences used for phylogenetic analyses of Eleotridae and Giuris spp. https://doi.org/10.7910/DVN/WMDHOJ. 112

This project contains the following extended data:

  • Table S1_mtDNA_COI_sequence_references.pdf (Table S1)

Data are available under the terms of the Creative Commons Zero “No rights reserved” data waiver (CC0 1.0 Public domain dedication).

Reporting guidelines

Harvard Dataverse: ARRIVE checklist for ‘DNA barcoding detects resurrected taxon Giuris laglaizei (Sauvage 1880) in Sulawesi, Indonesia: Bolano Sau Lake payangka phylogeny, phenotypic characters and implications for Giuris spp. conservation’ https://doi.org/10.7910/DVN/JL5JP9. 69

Data are available under the terms of the Creative Commons Zero “No rights reserved” data waiver (CC0 1.0 Public domain dedication).

Acknowledgements

The authors gratefully acknowledge a vital contribution from Philippe Keith of the National Museum of Natural History, Paris in the form of a Giuris laglaizei COI nucleotide sequence which was not yet available through public databases. The authors also wish to thank the Parigi Moutong District Marine and Fisheries Service, Central Sulawesi and the Faculty of Animal Husbandry and Fisheries, Tadulako University, Palu for support during this research.

Funding Statement

This study was partially supported by the Parigi Moutong District Marine and Fisheries Service, Central Sulawesi under the Bolano Sau Lake Baseline Survey Project in collaboration with Universitas Tadulako.

The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

[version 2; peer review: 2 approved]

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F1000Res. 2023 Feb 16. doi: 10.5256/f1000research.143553.r161563

Reviewer response for version 2

Jonas P Quilang 1

I don't have further comments on the revised article.

Is the work clearly and accurately presented and does it cite the current literature?

Yes

If applicable, is the statistical analysis and its interpretation appropriate?

Yes

Are all the source data underlying the results available to ensure full reproducibility?

Yes

Is the study design appropriate and is the work technically sound?

Partly

Are the conclusions drawn adequately supported by the results?

Yes

Are sufficient details of methods and analysis provided to allow replication by others?

Yes

Reviewer Expertise:

NA

I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.

F1000Res. 2023 Jan 27. doi: 10.5256/f1000research.143553.r161562

Reviewer response for version 2

Aurycéia Guimarães-Costa 1

After reviewing the corrections made by the authors, I consider them all to be very appropriate. With no further considerations to make, I approve for publication.

Is the work clearly and accurately presented and does it cite the current literature?

Yes

If applicable, is the statistical analysis and its interpretation appropriate?

Yes

Are all the source data underlying the results available to ensure full reproducibility?

Yes

Is the study design appropriate and is the work technically sound?

Yes

Are the conclusions drawn adequately supported by the results?

Yes

Are sufficient details of methods and analysis provided to allow replication by others?

Yes

Reviewer Expertise:

Evolution, DNA Barcoding, phylogeny

I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.

F1000Res. 2022 Jul 18. doi: 10.5256/f1000research.120417.r137863

Reviewer response for version 1

Aurycéia Guimarães-Costa 1

The manuscript by Ndobe et al. brings up taxonomic information about a group of species that have many difficulties in morphological identification, which are members of the Eleotridae family. The authors presented a brief history of the revisions of the taxonomic nomenclatures that the species of Giuris passed, showing that there are still confusions in the delimitation of the species.

In the work, the authors used the DNA Barcoding methodology to show that specimens regularly identified as G. margaritacea/ G. margaritaceus are actually Giuris laglaizei, in addition to identifying the first occurrence of this species in Indonesia.

Overall, I liked the manuscript. The objectives were achieved based on the DNA Barcoding methodology. Although this methodology is very direct and objective, the authors also elucidated other questions related to the taxonomy of the group, such as, for example, the elucidation of a species complex ( Giuris margaritacea) that may comprise at least eight species. This evidence is extremely important for the delimitation of conservation care for the correct species.

Thus, this study, which integrated morphology and molecular, needs to be disseminated to science and, mainly, to researchers interested in the evolutionary relationships of the Eleotridae family.

Minor revisions

  • Background: change “seventeen" to “17”

  • I suggest changing all mentions of the name "Payangka" that are in italic font to regular font, as even mentioned in the text as a popular name for the species, an italicized name can be confused with the genus.

  • I think the tree in Figure 4 is not didactic for visualizing Giuris' clusters. I strongly advise rendering the tree to a linear topology, so that the reader does not have a hard time seeing the formation of the groups and the names of the species.

Is the work clearly and accurately presented and does it cite the current literature?

Yes

If applicable, is the statistical analysis and its interpretation appropriate?

Yes

Are all the source data underlying the results available to ensure full reproducibility?

Yes

Is the study design appropriate and is the work technically sound?

Yes

Are the conclusions drawn adequately supported by the results?

Yes

Are sufficient details of methods and analysis provided to allow replication by others?

Yes

Reviewer Expertise:

Evolution, DNA Barcoding, phylogeny

I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.

F1000Res. 2023 Jan 23.
Samliok Ndobe 1

Thank you very much for your input and approval. Please see below detailed response to your suggestions for Minor revisions

1. Background: change “seventeen" to “17”

Response: Thank you, we have made this change.

2. I suggest changing all mentions of the name "Payangka" that are in italic font to regular font, as even mentioned in the text as a popular name for the species, an italicized name can be confused with the genus.

Response: Thank you, we have made this change.

3. I think the tree in Figure 4 is not didactic for visualizing Giuris' clusters. I strongly advise rendering the tree to a linear topology, so that the reader does not have a hard time seeing the formation of the groups and the names of the species.

Response: Thank you for the suggestion, but we have not made this suggested change. Using a linear topology makes the tree too long to fit (at a readable size) on a standard page or on a laptop screen. We could produce the tree in a linear format and add it to the "Extended Data" deposited in the on-line repository. Please advise if you think that would be a good idea.

F1000Res. 2022 May 23. doi: 10.5256/f1000research.120417.r135393

Reviewer response for version 1

Jonas P Quilang 1

The authors collected Payangka specimens from August to December 2019 in Bolano Sau Lake in Parigi Moutong District, Central Sulawesi Province, Indonesia. They recorded the length, weight and sex of 111 specimens and obtained data for 17 morphometric and six meristic characters from 42 specimens. These morphometric and meristic data were used for morphological analysis and determination of length-weight relationship. In addition, the authors obtained the mitochondrial cytochrome c oxidase I (COI) sequence from a single specimen for molecular identification via DNA barcoding. Additional COI sequences were obtained from public databases for phylogenetic analysis. DNA barcoding revealed that the specimen matched with Giuris laglaizei in public databases.

The study is interesting because this is the first record for this species outside of its known distribution (Philippines). However, it could have been better if additional specimens were sequenced for their COI so as to have replication and also to be able to compute for intra-species genetic distance and to determine if there is genetic differentiation within the species. COI sequencing of additional specimens may reveal not only genetic differentiation but also presence of cryptic species.

COI is an established marker in fishes and other animals for DNA barcoding, that is, for species identification and delineation. However, for phylogenetic studies additional molecular mitochondrial and nuclear markers have to be used and so caution should be observed when using the terms phylogenetic and polyphyletic in the manuscript. A more comprehensive phylogenetic analysis which should include all species under the genus Giuris and other genera under Eleotridae and using not just a single molecular marker (COI) should be done before one can conclude that Giuris is indeed polyphyletic and not monophyletic or paraphyletic; hence, the authors should avoid using the term polyphyletic.

Lastly, the colon in the title is usually used to separate the main part (which is broader in scope) from the subtitle or explanatory part. It seems that the use of the colon in the title is inappropriate. The first part of the title is declarative while the second part (to the right of the colon, which is supposedly the subtopic), is descriptive and so there is a disconnect. I suggest that the title be made more specific and more reflective of what was done in the study. The bulk of the study is on morphological analysis, hence, this should be given more emphasis in the title. Only a single DNA sequence was generated in this study, which was used for the DNA barcoding and phylogenetics aspects of the study.

Please see additional comments and corrections in the attached copy of the manuscript.

Is the work clearly and accurately presented and does it cite the current literature?

Yes

If applicable, is the statistical analysis and its interpretation appropriate?

Yes

Are all the source data underlying the results available to ensure full reproducibility?

Yes

Is the study design appropriate and is the work technically sound?

Partly

Are the conclusions drawn adequately supported by the results?

Yes

Are sufficient details of methods and analysis provided to allow replication by others?

Yes

Reviewer Expertise:

Population genetics, molecular genetics and phylogenetics, fish biology

I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard, however I have significant reservations, as outlined above.

F1000Res. 2023 Jan 23.
Samliok Ndobe 1

Thank you very much for your thoughful input. Dey=tailed responses are given below.

The study is interesting because this is the first record for this species outside of its known distribution (Philippines). However, it could have been better if additional specimens were sequenced for their COI so as to have replication and also to be able to compute for intra-species genetic distance and to determine if there is genetic differentiation within the species. COI sequencing of additional specimens may reveal not only genetic differentiation but also presence of cryptic species.

Response: we also consider that this additional work would be worthwhile. We are exploring the possibility of a more detailed study on payangka (possibly focused on more than one lake) in order to address such additional research questions, which were not within the scope of the research reported here.

COI is an established marker in fishes and other animals for DNA barcoding, that is, for species identification and delineation. However, for phylogenetic studies additional molecular mitochondrial and nuclear markers have to be used and so caution should be observed when using the terms phylogenetic and polyphyletic in the manuscript. A more comprehensive phylogenetic analysis which should include all species under the genus Giuris and other genera under Eleotridae and using not just a single molecular marker (COI) should be done before one can conclude that Giuris is indeed polyphyletic and not monophyletic or paraphyletic; hence, the authors should avoid using the term polyphyletic.

Response: thank you for this advice. We accept the point you are making and have removed all occurrences of the term polyphyletic, using expressions which we consider reflect the results we can consider as robust. With respect to the term phylogenetic, we consider that we have used this term sparingly, in two ways. Firstly, as a description of what we did (construction of phylogenetic trees), and secondly referring to the interpretation (phylogenetic analysis) of results from both our study (in particular the phylogenetic trees) and other studies. With respect to other markers, again that is outside the scope of this study. However, we fully agree that further research is needed, and indeed the need for such research is one of our conclusions. In the revised version we have explicitly stated the need for additional molecular markers in the conclusion.

Lastly, the colon in the title is usually used to separate the main part (which is broader in scope) from the subtitle or explanatory part. It seems that the use of the colon in the title is inappropriate. The first part of the title is declarative while the second part (to the right of the colon, which is supposedly the subtopic), is descriptive and so there is a disconnect. I suggest that the title be made more specific and more reflective of what was done in the study. The bulk of the study is on morphological analysis, hence, this should be given more emphasis in the title. Only a single DNA sequence was generated in this study, which was used for the DNA barcoding and phylogenetics aspects of the study.

Response: thank you for this input, which we will certainly consider for the future. We have not edited the title in this revised version because of the publishing model of F1000 Research; as the paper was published on-line before review, we consider this could cause confusion. Additionally, the Editor and Reviewer 2 have not requested a change of title.

Please see additional comments and corrections in the attached copy of the manuscript.

Response: Thank you, we have addressed these points in the revised manuscript. We also made an annotated version of the pdf copy you kindly supplied, giving more detail on our edits in response to your suggestions and comments. We will endeavor to share this file if it is possible.

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Data Availability Statement

    Underlying data

    Harvard Dataverse: Bolano Sau Lake Fish Data https://doi.org/10.7910/DVN/JL5JP9. 69

    This project contains the following underlying data:

    • Giuris_payangka_data_2019.tab (dataset)

    Data are available under the terms of the Creative Commons Zero “No rights reserved” data waiver (CC0 1.0 Public domain dedication).

    NCBI Metazoan Mitochondrial COX1 SUB10960949 63 :

    Extended data

    Harvard Dataverse: GenBank Accessions, BOLD Records (mitochondrial COI gene sequences) and other nucleotide sequences used for phylogenetic analyses of Eleotridae and Giuris spp. https://doi.org/10.7910/DVN/WMDHOJ. 112

    This project contains the following extended data:

    • Table S1_mtDNA_COI_sequence_references.pdf (Table S1)

    Data are available under the terms of the Creative Commons Zero “No rights reserved” data waiver (CC0 1.0 Public domain dedication).

    Reporting guidelines

    Harvard Dataverse: ARRIVE checklist for ‘DNA barcoding detects resurrected taxon Giuris laglaizei (Sauvage 1880) in Sulawesi, Indonesia: Bolano Sau Lake payangka phylogeny, phenotypic characters and implications for Giuris spp. conservation’ https://doi.org/10.7910/DVN/JL5JP9. 69

    Data are available under the terms of the Creative Commons Zero “No rights reserved” data waiver (CC0 1.0 Public domain dedication).


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