Skip to main content
PMC home page
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1990 Apr 25;18(Suppl):2231–2235. doi: 10.1093/nar/18.suppl.2231

Compilation of small RNA sequences, 1990

Ram Reddy 1, Shashi Gupta 1
PMCID: PMC331874  PMID: 2333225

Full text

PDF
2232

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Akao M., Reddy R., Busch H. Multiple sequences in the Drosophila melanogaster U3 RNA gene are homologous to vertebrate U3 RNA. Biochem Biophys Res Commun. 1986 Jul 31;138(2):512–518. doi: 10.1016/s0006-291x(86)80526-5. [DOI] [PubMed] [Google Scholar]
  2. Anzai K., Kobayashi S., Kitamura N., Kanai Y., Nakajima H., Suehiro Y., Goto S. Isolation and sequencing of a genomic clone for mouse brain specific small RNA. J Neurochem. 1986 Sep;47(3):673–677. doi: 10.1111/j.1471-4159.1986.tb00664.x. [DOI] [PubMed] [Google Scholar]
  3. Brajanović-Urosević N., Naora H., Mills G. C., Holoubek V. Nucleotide sequence of small chromatin-associated RNA (fr3 RNA). Eur J Biochem. 1988 Apr 15;173(2):375–376. doi: 10.1111/j.1432-1033.1988.tb14008.x. [DOI] [PubMed] [Google Scholar]
  4. Brennwald P., Porter G., Wise J. A. U2 small nuclear RNA is remarkably conserved between Schizosaccharomyces pombe and mammals. Mol Cell Biol. 1988 Dec;8(12):5575–5580. doi: 10.1128/mcb.8.12.5575. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Brow D. A., Guthrie C. Spliceosomal RNA U6 is remarkably conserved from yeast to mammals. Nature. 1988 Jul 21;334(6179):213–218. doi: 10.1038/334213a0. [DOI] [PubMed] [Google Scholar]
  6. Brown J. W., Waugh R. Maize U2 snRNAs: gene sequence and expression. Nucleic Acids Res. 1989 Nov 25;17(22):8991–9001. doi: 10.1093/nar/17.22.8991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Chang D. D., Clayton D. A. Mouse RNAase MRP RNA is encoded by a nuclear gene and contains a decamer sequence complementary to a conserved region of mitochondrial RNA substrate. Cell. 1989 Jan 13;56(1):131–139. doi: 10.1016/0092-8674(89)90991-4. [DOI] [PubMed] [Google Scholar]
  8. Felici F., Cesareni G., Hughes J. M. The most abundant small cytoplasmic RNA of Saccharomyces cerevisiae has an important function required for normal cell growth. Mol Cell Biol. 1989 Aug;9(8):3260–3268. doi: 10.1128/mcb.9.8.3260. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Gold H. A., Topper J. N., Clayton D. A., Craft J. The RNA processing enzyme RNase MRP is identical to the Th RNP and related to RNase P. Science. 1989 Sep 22;245(4924):1377–1380. doi: 10.1126/science.2476849. [DOI] [PubMed] [Google Scholar]
  10. Greider C. W., Blackburn E. H. A telomeric sequence in the RNA of Tetrahymena telomerase required for telomere repeat synthesis. Nature. 1989 Jan 26;337(6205):331–337. doi: 10.1038/337331a0. [DOI] [PubMed] [Google Scholar]
  11. Guo P. X., Bailey S., Bodley J. W., Anderson D. Characterization of the small RNA of the bacteriophage phi 29 DNA packaging machine. Nucleic Acids Res. 1987 Sep 11;15(17):7081–7090. doi: 10.1093/nar/15.17.7081. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Hanley B. A., Schuler M. A. Nucleotide sequence of a pea U2 snRNA gene. Nucleic Acids Res. 1989 Dec 11;17(23):10106–10106. doi: 10.1093/nar/17.23.10106. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Howe J. G., Shu M. D. Isolation and characterization of the genes for two small RNAs of herpesvirus papio and their comparison with Epstein-Barr virus-encoded EBER RNAs. J Virol. 1988 Aug;62(8):2790–2798. doi: 10.1128/jvi.62.8.2790-2798.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Kiss T., Antal M., Hegyi H., Solymosy F. Plant small nuclear RNAs. IV. The structure of U1 RNA from Chlorella saccharophila: a phylogenetic support, in terms of RNA structure, for the probable interaction between U1 and U2 and RNPs during the splicing of pre-mRNA. Nucleic Acids Res. 1988 Mar 25;16(6):2734–2734. doi: 10.1093/nar/16.6.2734. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Kiss T., Jakab G., Antal M., Pálfi Z., Hegyi H., Kis M., Solymosy F. Plant small nuclear RNAs. V. U4 RNA is present in broad bean plants in the form of sequence variants and is base-paired with U6 RNA. Nucleic Acids Res. 1988 Jun 24;16(12):5407–5426. doi: 10.1093/nar/16.12.5407. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Lampson B. C., Sun J., Hsu M. Y., Vallejo-Ramirez J., Inouye S., Inouye M. Reverse transcriptase in a clinical strain of Escherichia coli: production of branched RNA-linked msDNA. Science. 1989 Feb 24;243(4894 Pt 1):1033–1038. doi: 10.1126/science.2466332. [DOI] [PubMed] [Google Scholar]
  17. Marshallsay C., Prehn S., Zwieb C. cDNA cloning of the wheat germ SRP 7S RNAs. Nucleic Acids Res. 1989 Feb 25;17(4):1771–1771. doi: 10.1093/nar/17.4.1771. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Mazan S., Bachellerie J. P. Structure and organization of mouse U3B RNA functional genes. J Biol Chem. 1988 Dec 25;263(36):19461–19467. [PubMed] [Google Scholar]
  19. Montzka K. A., Steitz J. A. Additional low-abundance human small nuclear ribonucleoproteins: U11, U12, etc. Proc Natl Acad Sci U S A. 1988 Dec;85(23):8885–8889. doi: 10.1073/pnas.85.23.8885. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Mottram J., Perry K. L., Lizardi P. M., Lührmann R., Agabian N., Nelson R. G. Isolation and sequence of four small nuclear U RNA genes of Trypanosoma brucei subsp. brucei: identification of the U2, U4, and U6 RNA analogs. Mol Cell Biol. 1989 Mar;9(3):1212–1223. doi: 10.1128/mcb.9.3.1212. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Mottram J., Perry K. L., Lizardi P. M., Lührmann R., Agabian N., Nelson R. G. Isolation and sequence of four small nuclear U RNA genes of Trypanosoma brucei subsp. brucei: identification of the U2, U4, and U6 RNA analogs. Mol Cell Biol. 1989 Mar;9(3):1212–1223. doi: 10.1128/mcb.9.3.1212. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Munishkin A. V., Voronin L. A., Chetverin A. B. An in vivo recombinant RNA capable of autocatalytic synthesis by Q beta replicase. Nature. 1988 Jun 2;333(6172):473–475. doi: 10.1038/333473a0. [DOI] [PubMed] [Google Scholar]
  23. Myslinski E., Branlant C. A new snRNA with a trimethylated cap structure in the slime mold Physarum polycephalum. Nucleic Acids Res. 1989 Nov 25;17(22):9470–9470. doi: 10.1093/nar/17.22.9470. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Parker R., Simmons T., Shuster E. O., Siliciano P. G., Guthrie C. Genetic analysis of small nuclear RNAs in Saccharomyces cerevisiae: viable sextuple mutant. Mol Cell Biol. 1988 Aug;8(8):3150–3159. doi: 10.1128/mcb.8.8.3150. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Poritz M. A., Siegel V., Hansen W., Walter P. Small ribonucleoproteins in Schizosaccharomyces pombe and Yarrowia lipolytica homologous to signal recognition particle. Proc Natl Acad Sci U S A. 1988 Jun;85(12):4315–4319. doi: 10.1073/pnas.85.12.4315. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Porter G. L., Brennwald P. J., Holm K. A., Wise J. A. The sequence of U3 from Schizosaccharomyces pombe suggests structural divergence of this snRNA between metazoans and unicellular eukaryotes. Nucleic Acids Res. 1988 Nov 11;16(21):10131–10152. doi: 10.1093/nar/16.21.10131. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Reddy R., Henning D., Liu M. H., Spector D., Busch H. Identification and characterization of a polyadenylated small RNA (s-poly A+ RNA) in dinoflagellates. Biochem Biophys Res Commun. 1985 Mar 15;127(2):552–557. doi: 10.1016/s0006-291x(85)80195-9. [DOI] [PubMed] [Google Scholar]
  28. Ribes V., Dehoux P., Tollervey D. 7SL RNA from Schizosaccharomyces pombe is encoded by a single copy essential gene. EMBO J. 1988 Jan;7(1):231–237. doi: 10.1002/j.1460-2075.1988.tb02804.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Small K., Brennwald P., Skinner H., Schaefer K., Wise J. A. Sequence and structure of U5 snRNA from Schizosaccharomyces pombe. Nucleic Acids Res. 1989 Nov 25;17(22):9483–9483. doi: 10.1093/nar/17.22.9483. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Tschudi C., Krainer A. R., Ullu E. The U6 small nuclear RNA from Trypanosoma brucei. Nucleic Acids Res. 1988 Dec 9;16(23):11375–11375. doi: 10.1093/nar/16.23.11375. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Tyc K., Steitz J. A. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. EMBO J. 1989 Oct;8(10):3113–3119. doi: 10.1002/j.1460-2075.1989.tb08463.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Tyc K., Steitz J. A. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. EMBO J. 1989 Oct;8(10):3113–3119. doi: 10.1002/j.1460-2075.1989.tb08463.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Vankan P., Edoh D., Filipowicz W. Structure and expression of the U5 snRNA gene of Arabidopsis thaliana. Conserved upstream sequence elements in plant U-RNA genes. Nucleic Acids Res. 1988 Nov 25;16(22):10425–10440. doi: 10.1093/nar/16.22.10425. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Wassarman D. A., Lee S. I., Steitz J. A. Nucleotide sequence of HSUR 5 RNA from herpesvirus saimiri. Nucleic Acids Res. 1989 Feb 11;17(3):1258–1258. doi: 10.1093/nar/17.3.1258. [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. Zagorski J., Tollervey D., Fournier M. J. Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs. Mol Cell Biol. 1988 Aug;8(8):3282–3290. doi: 10.1128/mcb.8.8.3282. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Zucker-Aprison E., Thomas J. D., Blumenthal T. C. elegans snRNAs: a model for U4/U6 base pairing. Nucleic Acids Res. 1988 Jul 25;16(14B):7188–7188. doi: 10.1093/nar/16.14.7188. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Zucker-Aprison E., Thomas J. D., Blumenthal T. C. elegans snRNAs: a model for U4/U6 base pairing. Nucleic Acids Res. 1988 Jul 25;16(14B):7188–7188. doi: 10.1093/nar/16.14.7188. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. van Santen V. L., Swain W., Spritz R. A. Nucleotide sequences of two soybean U1 snRNA genes. Nucleic Acids Res. 1988 May 11;16(9):4176–4176. doi: 10.1093/nar/16.9.4176. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES