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Journal of Clinical Pathology logoLink to Journal of Clinical Pathology
. 1992 Apr;45(4):324–327. doi: 10.1136/jcp.45.4.324

Restriction endonuclease analysis of Aspergillus fumigatus DNA.

J P Burnie 1, A Coke 1, R C Matthews 1
PMCID: PMC495273  PMID: 1349614

Abstract

AIMS: To develop a genome based DNA fingerprinting system for Aspergillus fumigatus mould. METHODS: DNA was extracted from 21 isolates obtained from eight patients with an aspergilloma. This was with a freeze-dried mycelial extract fragmented in liquid nitrogen. DNA was subsequently purified by phenol-chloroform extraction followed by ultracentrifugation on a caesium chloride gradient. The DNA was restricted by EcoRI and Xba I. RESULTS: All isolates were identical when cut by EcoRI; Xba I delineated six DNA types. CONCLUSIONS: DNA fingerprinting can be used to type isolates of A fumigatus. Strains from within an aspergilloma which were morphologically distinct could either have the identical DNA fingerprint or produce a unique type.

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Selected References

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  1. Burnie J. P., Matthews R. C., Clark I., Milne L. J. Immunoblot fingerprinting Aspergillus fumigatus. J Immunol Methods. 1989 Mar 31;118(2):179–186. doi: 10.1016/0022-1759(89)90004-5. [DOI] [PubMed] [Google Scholar]
  2. Carruba G., Pontieri E., De Bernardis F., Martino P., Cassone A. DNA fingerprinting and electrophoretic karyotype of environmental and clinical isolates of Candida parapsilosis. J Clin Microbiol. 1991 May;29(5):916–922. doi: 10.1128/jcm.29.5.916-922.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Denning D. W., Clemons K. V., Hanson L. H., Stevens D. A. Restriction endonuclease analysis of total cellular DNA of Aspergillus fumigatus isolates of geographically and epidemiologically diverse origin. J Infect Dis. 1990 Nov;162(5):1151–1158. doi: 10.1093/infdis/162.5.1151. [DOI] [PubMed] [Google Scholar]
  4. Dewhurst A. G., Cooper M. J., Khan S. M., Pallett A. P., Dathan J. R. Invasive aspergillosis in immunosuppressed patients: potential hazard of hospital building work. BMJ. 1990 Oct 6;301(6755):802–804. doi: 10.1136/bmj.301.6755.802. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Doebbeling B. N., Hollis R. J., Isenberg H. D., Wenzel R. P., Pfaller M. A. Restriction fragment analysis of a Candida tropicalis outbreak of sternal wound infections. J Clin Microbiol. 1991 Jun;29(6):1268–1270. doi: 10.1128/jcm.29.6.1268-1270.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Lee W., Burnie J. P., Matthews R. C., Oppenheim B. O., Damani N. N. Hospital outbreaks with yeasts. J Hosp Infect. 1991 Jun;18 (Suppl A):237–249. doi: 10.1016/0195-6701(91)90029-8. [DOI] [PubMed] [Google Scholar]
  7. Leslie C. E., Flannigan B., Milne L. J. Morphological studies on clinical isolates of Aspergillus fumigatus. J Med Vet Mycol. 1988;26(6):335–341. [PubMed] [Google Scholar]
  8. Matthews R., Burnie J. Assessment of DNA fingerprinting for rapid identification of outbreaks of systemic candidiasis. BMJ. 1989 Feb 11;298(6670):354–357. doi: 10.1136/bmj.298.6670.354. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Opal S. M., Asp A. A., Cannady P. B., Jr, Morse P. L., Burton L. J., Hammer P. G., 2nd Efficacy of infection control measures during a nosocomial outbreak of disseminated aspergillosis associated with hospital construction. J Infect Dis. 1986 Mar;153(3):634–637. doi: 10.1093/infdis/153.3.634. [DOI] [PubMed] [Google Scholar]
  10. Oxford J. S. What is the true nature of epidemic influenza virus and how do new epidemic viruses spread? Epidemiol Infect. 1987 Aug;99(1):1–3. doi: 10.1017/s095026880006684x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Scherer S., Stevens D. A. Application of DNA typing methods to epidemiology and taxonomy of Candida species. J Clin Microbiol. 1987 Apr;25(4):675–679. doi: 10.1128/jcm.25.4.675-679.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Specht C. A., DiRusso C. C., Novotny C. P., Ullrich R. C. A method for extracting high-molecular-weight deoxyribonucleic acid from fungi. Anal Biochem. 1982 Jan 1;119(1):158–163. doi: 10.1016/0003-2697(82)90680-7. [DOI] [PubMed] [Google Scholar]
  13. Vincent R. D., Goewert R., Goldman W. E., Kobayashi G. S., Lambowitz A. M., Medoff G. Classification of Histoplasma capsulatum isolates by restriction fragment polymorphisms. J Bacteriol. 1986 Mar;165(3):813–818. doi: 10.1128/jb.165.3.813-818.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Wöstemeyer J. Strain-dependent variation in ribosomal DNA arrangement in Absidia glauca. Eur J Biochem. 1985 Jan 15;146(2):443–448. doi: 10.1111/j.1432-1033.1985.tb08671.x. [DOI] [PubMed] [Google Scholar]
  15. de Bièvre C., Dauguet C., Nguyen V. H., Ibrahim-Granet O. Polymorphism in mitochondrial DNA of several Trichophyton rubrum isolates from clinical specimens. Ann Inst Pasteur Microbiol. 1987 Nov-Dec;138(6):719–727. doi: 10.1016/0769-2609(87)90149-9. [DOI] [PubMed] [Google Scholar]

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